KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:22:43 2014 Check: 00 .. Name: ENSTTRP00000009252/1-736 Len: 810 Check: 5363 Weight: 1.00 Name: bmy_01767T0/1-810 Len: 810 Check: 7466 Weight: 1.00 Name: ENSP00000005340/1-736 Len: 810 Check: 1957 Weight: 1.00 Name: BACU001264/1-733 Len: 810 Check: 2823 Weight: 1.00 Name: ENSBTAP00000004002/1-736 Len: 810 Check: 2030 Weight: 1.00 // 1 50 ENSTTRP00000009252/1-736 MAGSGAGGGG VGETKVIYHL DEEETPYLVK IPVPAERITL GDFKSVLQRP bmy_01767T0/1-810 MAGSGAGGGG AGETKVIYHL DEEETPYLVK IPVPAERITL GDFKSVLQRP ENSP00000005340/1-736 MAGSSTGGGG VGETKVIYHL DEEETPYLVK IPVPAERITL GDFKSVLQRP BACU001264/1-733 MAGSGAGGGG VGETKVIYHL DEEETPYLVK IPVPAERITL GDFKSVLQRP ENSBTAP00000004002/1-736 MAGSGAGGGG VGETKVIYHL DEEETPYLVK IPVPAERITL GDFKSVLQRP 51 100 ENSTTRP00000009252/1-736 AGAKYFFKSM DQDFGVVKEE ISDDNARLPC FNGRVVSWLV SSDNPQPEMA bmy_01767T0/1-810 AGAKYFFKSM DQDFGVVKEE ISDDNARLPC FNGRVVSWLV SSDNPQPEMA ENSP00000005340/1-736 AGAKYFFKSM DQDFGVVKEE ISDDNARLPC FNGRVVSWLV SSDNPQPEMA BACU001264/1-733 AGAKYFFKSM DQDFGVVKEE ISDDNAHLPC FNGRVVSWLV SSDNPQPETA ENSBTAP00000004002/1-736 AGAKYFFKSM DQDFGVVKEE ISDDNARLPC FNGRVVSWLV SSDNPQPEMA 101 150 ENSTTRP00000009252/1-736 PPAHEPRTDP VPPPPPXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX bmy_01767T0/1-810 PPAHEPRTDP APPPPPVPPL PPERTSGIGD SRPPSFHPNV SSSRENLEPE ENSP00000005340/1-736 PPVHEPRAEL APPAPPLPPL PPERTSGIGD SRPPSFHPNV SSSHENLEPE BACU001264/1-733 PPAHEPRTDP APPPPPVPPL PPERTSGIGD SRPPSFHPNV SSSRENLEPE ENSBTAP00000004002/1-736 PPAHEPRTDL APPPPPLPPL PPERTSGIGD SRPPSFHPNV SSSRENLEPE 151 200 ENSTTRP00000009252/1-736 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX bmy_01767T0/1-810 TETESVVSLR RERPRRRDSS ERGGEGGQAW RPARPGAGEG LAPTQSPDEA ENSP00000005340/1-736 TETESVVSLR RERPRRRDSS EHGAGGHRTG GPSRLERHLA GYESSSTLMT BACU001264/1-733 TETESVVSLR RERPRRRDSS ERGAGGHRPS GPSRLERHLA GYESSSTLMT ENSBTAP00000004002/1-736 TETESVVSLR RERPRRRDSS EHGAGGHRPS GPSRLERHLA GYESSSTLMT 201 250 ENSTTRP00000009252/1-736 XXXXXXXX-- ---------- ---------- ---------- ---------- bmy_01767T0/1-810 EEPEAWFLRF LFPLSGGPPA QWPLEAGAPP GRVRELLHPH DQRAGEHQPG ENSP00000005340/1-736 SELESTSL-- ---------- ---------- ---------- ---------- BACU001264/1-733 SELESTSL-- ---------- ---------- ---------- ---------- ENSBTAP00000004002/1-736 SELESTSL-- ---------- ---------- ---------- ---------- 251 300 ENSTTRP00000009252/1-736 ----XXXXXX XXXXXXXXXX XXXXXX--XX XXXXXXXXXX XXXXXXXXXX bmy_01767T0/1-810 GLGRGGHHEQ VGLRRPPRGA PPPPPPPRPL LWPRDHRPAS SPPDLPAGSA ENSP00000005340/1-736 ----GDSDEE DTMSRFSSST EQSSAS--RL LKRHRRRRKQ RPPRLERTSS BACU001264/1-733 ----GDSDEE DTM---SSST EQSSAS--RL LKRHRRRRKQ RPPRLERASS ENSBTAP00000004002/1-736 ----GDSDED DTMSRFSSST EQSSAS--RL LKRHRRRRKQ RPPRLERASS 301 350 ENSTTRP00000009252/1-736 XX-------- ---------- --------XX XXXXXXXXXX XXXXXXEKYN bmy_01767T0/1-810 APRSRAAPPA SSSATGGGGN SGHPAWRGSV TDSTMSLNII TVTLNMEKYN ENSP00000005340/1-736 FS-------- ---------- --------SV TDSTMSLNII TVTLNMEKYN BACU001264/1-733 FS-------- ---------- --------SV TDSTMSLNII TVTLNMEKYN ENSBTAP00000004002/1-736 FS-------- ---------- --------SV TDSTMSLNII TVTLNMEKYN 351 400 ENSTTRP00000009252/1-736 FLGISIVGQS NERGDGGIYI GSIMKGGAVA ADGRIEPGDM LLQVNDMNFE bmy_01767T0/1-810 FLGISIVGQS NERGDGGIYI GSIMKGGAVA ADGRIEPGDM LLQVNDMNFE ENSP00000005340/1-736 FLGISIVGQS NERGDGGIYI GSIMKGGAVA ADGRIEPGDM LLQVNDMNFE BACU001264/1-733 FLGISIVGQS NERGDGGIYI GSIMKGGAVA ADGRIEPGDM LLQVNDMNFE ENSBTAP00000004002/1-736 FLGISIVGQS NERGDGGIYI GSIMKGGAVA ADGRIEPGDM LLQVNDMNFE 401 450 ENSTTRP00000009252/1-736 NMSNDDAVRV LRDIVHKPGX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX bmy_01767T0/1-810 NMSNDDAVRV LRDIVHKPGP IVLTVAKCWD PSPQAYFTLP RNEPIQPIDP ENSP00000005340/1-736 NMSNDDAVRV LRDIVHKPGP IVLTVAKCWD PSPQAYFTLP RNEPIQPIDP BACU001264/1-733 NMSNDDAVRV LRDIVHKPGP IVLTVAKCWD PSPQAYFTLP RNEPIQPIDP ENSBTAP00000004002/1-736 NMSNDDAVRV LRDIVHKPGP IVLTVAKCWD PSPQAYFTLP RNEPIQPIDP 451 500 ENSTTRP00000009252/1-736 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXCEGRG LSIHTDMASV bmy_01767T0/1-810 AAWVSHSAAL TGTFPAYPGS SSMSTITSGS SLPDGCEGRG LSIHTDMASV ENSP00000005340/1-736 AAWVSHSAAL TGTFPAYPGS SSMSTITSGS SLPDGCEGRG LSVHTDMASV BACU001264/1-733 AAWVSHSAAL TGTFPAYPGS SSMSTITSGS SLPDGCEGRG LSIHTDMASV ENSBTAP00000004002/1-736 AAWVSHSAAL TGTFPAYPGS SSMSTITSGS SLPDGCEGRG LSIHTDMASV 501 550 ENSTTRP00000009252/1-736 SKAMAAPESG LEVRVRMWLK ITIPNAFLGS DVVDWLYHHV EGFPERREAR bmy_01767T0/1-810 TKAMAAPESG LEVRDRMWLK ITIPNAFLGS DVVDWLYHHV EGFPERREAR ENSP00000005340/1-736 TKAMAAPESG LEVRDRMWLK ITIPNAFLGS DVVDWLYHHV EGFPERREAR BACU001264/1-733 TKAMAAPESG LEVRDRMWLK ITIPNAFLGS DVVDWLYHHV EGFPERREAR ENSBTAP00000004002/1-736 TKAMAAPESG LEVRDRMWLK ITIPNAFLGS DVVDWLYHHV EGFPERREAR 551 600 ENSTTRP00000009252/1-736 KYASGLLKAG LIRHTVNKIT FSEQCYYVFG DLSGGCESYL VNLSLNDNDG bmy_01767T0/1-810 KYASGLLKAG LIRHTVNKIT FSEQCYYVFG DLSGGCESYL VNLSLNDNDG ENSP00000005340/1-736 KYASGLLKAG LIRHTVNKIT FSEQCYYVFG DLSGGCESYL VNLSLNDNDG BACU001264/1-733 KYASGLLKAG LIRHTVNKIT FSEQCYYVFG DLSGGCESYL VNLSLNDNDG ENSBTAP00000004002/1-736 KYASGLLKAG LIRHTVNKIT FSEQCYYVFG DLSGGCESYL VNLSLNDNDG 601 650 ENSTTRP00000009252/1-736 SSGASDQDTL APLPGATPWP LLPTFSYQYP APHPYSPQPP PYHELSSYTY bmy_01767T0/1-810 SSGASDQDTL APLPGATPWP LLPTFSYQYP APHPYSPQPP PYHELSSYTY ENSP00000005340/1-736 SSGASDQDTL APLPGATPWP LLPTFSYQYP APHPYSPQPP PYHELSSYTY BACU001264/1-733 SSGASDQDTL APLPGATPWP LLPTFSYQYP APHPYSPQPP PYHELSSYTY ENSBTAP00000004002/1-736 SSGASDQDTL APLPGATPWP LLPTFSYQYP APHPYSPQPP PYHELSSYTY 651 700 ENSTTRP00000009252/1-736 GGGSASSQHS EGSRSSGSTR SDGGVGRTGR PEERAPESKS GSGSESEPSS bmy_01767T0/1-810 GGGSASSQHS EGSRSSGSTR SDGGAGRTGR PEERAPESKS GSGSESEPSS ENSP00000005340/1-736 GGGSASSQHS EGSRSSGSTR SDGGAGRTGR PEERAPESKS GSGSESEPSS BACU001264/1-733 GGGSASSQHS EGSRSSGSTR SDGGAGRTGR PEERAPESKS GSGSESEPSS ENSBTAP00000004002/1-736 GGGSASSQHS EGSRSSGSTR SDGGAGRTGR PEDRAPESKS GSGSESEPSS 701 750 ENSTTRP00000009252/1-736 RGGSLRRGGE PGGTGDGGPP PSRGSSGGAP NLRAHPGLHP YGPPPGMALP bmy_01767T0/1-810 RGGSLRRGGE PGGTGDGGPP PSRGSSGGAP NLRAHPGLHP YGPPPGMALP ENSP00000005340/1-736 RGGSLRRGGE ASGTSDGGPP PSRGSTGGAP NLRAHPGLHP YGPPPGMALP BACU001264/1-733 RGGSLRRGGE PGGTGDGGPP PSRGSSGGAP NLRAHPGLHP YGPPPGMALP ENSBTAP00000004002/1-736 RGGSLRRGGE PGGTGDGGPP PSRGSSGGAP NLRAHPGLHP YGPPPGMALP 751 800 ENSTTRP00000009252/1-736 YNPMMVVMMP PPPPPVPPAV QPPGAPPVRD LGSVPPELTA SRQSFHMAMG bmy_01767T0/1-810 YNPMMVVMMP PPPPPVPPAV QPPGAPPVRD LGSVPPELTA SRQSFHMAMG ENSP00000005340/1-736 YNPMMVVMMP PPPPPVPPAV QPPGAPPVRD LGSVPPELTA SRQSFHMAMG BACU001264/1-733 YNPMMVVMMP PPPPPVPPAV QPPGAPPVRD LGSVPPELTA SRQSFHMAMG ENSBTAP00000004002/1-736 YNPMMVVMMP PPPPPVPPAV QPPGAPPVRD LGSVPPELTA SRQSFHMAMG 801 850 ENSTTRP00000009252/1-736 NPSEFFVDVM bmy_01767T0/1-810 NPSEFFVDVM ENSP00000005340/1-736 NPSEFFVDVM BACU001264/1-733 NPSEFFVDVM ENSBTAP00000004002/1-736 NPSEFFVDVM