KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:22:44 2014 Check: 00 .. Name: ENSBTAP00000004006/1-674 Len: 749 Check: 2610 Weight: 1.00 Name: ENSP00000327368/1-680 Len: 749 Check: 8743 Weight: 1.00 Name: ENSTTRP00000014422/1-614 Len: 749 Check: 7422 Weight: 1.00 Name: bmy_06856T0/1-740 Len: 749 Check: 4586 Weight: 1.00 Name: BACU020306/1-593 Len: 749 Check: 7955 Weight: 1.00 // 1 50 ENSBTAP00000004006/1-674 ---------- ---------- ---------- ---------- ---------- ENSP00000327368/1-680 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000014422/1-614 ---------- ---------- ---------- ---------- ---------- bmy_06856T0/1-740 MQPLLLFPKN FPAPLLTYPL NSTPPTMATL RNTVFRKSYS EILTRLPIGH BACU020306/1-593 ---------- ---------- ---------- ---------- ---------- 51 100 ENSBTAP00000004006/1-674 -------MLP QTALLLLMSL NLVHGVFYTE RYQTPTGIKG PPSNTKTQFF ENSP00000327368/1-680 -------MLP QIPFLLLVSL NLVHGVFYAE RYQMPTGIKG PLPNTKTQFF ENSTTRP00000014422/1-614 -------MLP QIALLLLISL NLAHGVFYTD RYQTPTGIKG PPSNTKTQIF bmy_06856T0/1-740 WKNPSENMLP QIALLLLISL NLVHGVFYTE RYQTPTGIKG PPSNTKTQFF BACU020306/1-593 -------MLP QIALLLLISL NLVHGVFYTE RYQTPTGIKG PPSNTKTQFF 101 150 ENSBTAP00000004006/1-674 IPYAIKGKGV SLRGEQGIPG PPGPAGPRGH PGPSGPPGKP GTGSPGPQGQ ENSP00000327368/1-680 IPYTIKSKGI AVRGEQGTPG PPGPAGPRGH PGPSGPPGKP GYGSPGLQGE ENSTTRP00000014422/1-614 IPYTIKSKGI SVRGEEGIPG PPGPAGPRGH PGPSGPPGKP GYGSPGLQGE bmy_06856T0/1-740 IPYAVKSKGI SVRGEQGIPG PPGPAGPRGH PGPSGPPGKP GYGSPGPQGE BACU020306/1-593 IPYAIKNKGI SVRGEQGIPG PPGPAGPRGH PGPSGPPGKP GYGSPGPQGE 151 200 ENSBTAP00000004006/1-674 PGLPGPPGPS ATGKPGLPGL PGKQGERGLN GPKGDIGPAG LPGPRGPPGP ENSP00000327368/1-680 PGLPGPPGPS AVGKPGVPGL PGKPGERGPY GPKGDVGPAG LPGPRGPPGP ENSTTRP00000014422/1-614 PGLPGPPGPS ATGKPGLPGL PGKPGKRGPY GPKGDIGPAG LPGLRGPPGP bmy_06856T0/1-740 PGLPGPPGPS ATGKPGLPGL PGKPGERGPY GPKGDTGPAG LPGLRGQPGP BACU020306/1-593 PGLPGPPGPS ATGKPGLPGL PGKPGERGPY GPKGDIGPAG LPGLRGLPGP 201 250 ENSBTAP00000004006/1-674 PGIPGPAGIS VPGKPGPQGP TGEPGPRGFP GEKGTSGVPG LNGQKGEMGH ENSP00000327368/1-680 PGIPGPAGIS VPGKPGQQGP TGAPGPRGFP GEKGAPGVPG MNGQKGEMGY ENSTTRP00000014422/1-614 PGIPGPAGIS VSGKPGPQGP PGALGPRGFP GEKGAPGVPG MNGQKGETGY bmy_06856T0/1-740 PGIPGPAGIS VSGKPGPQGP PGAPGPRGFP GEKGAPGVPG MNGQKGETGY BACU020306/1-593 PGIPGPAGIS VSGKPGPQGP PGAPGPRGFP GEKGAPGVPG MNGQKGEMGY 251 300 ENSBTAP00000004006/1-674 CTPCRPGERG LPGPQGPTGP PGPPGVGKRG ENGLPGQPGL KGDQGVPGER ENSP00000327368/1-680 GAPGRPGERG LPGPQGPTGP SGPPGVGKRG ENGVPGQPGI KGDRGFPGEM ENSTTRP00000014422/1-614 GAPGRPGDRG LPGPQGPMGP PGPPGVGKSG KNGFPGQPGI KGDRGFPGKR bmy_06856T0/1-740 GAPGRPGGRG LPGPQGPMGP PGPPGAGKSG ENGFPGQPGI KGDRGFPGER BACU020306/1-593 GAPGRPGGRG LPGPQGPMGP PGPPGVGKSG ENGFPGQPGI KGDRGFSGER 301 350 ENSBTAP00000004006/1-674 GAAGPSGPQG PPGEQGPEGI GKPGAPGIPG QPGIPGMKGQ PGAPGTAGLP ENSP00000327368/1-680 GPIGPPGPQG PPGERGPEGI GKPGAAGAPG QPGIPGTKGL PGAPGIAGPP ENSTTRP00000014422/1-614 GPTGPPGPQG PPGEQGPEGT GKPGAPGAPG QPGVPGTKGH PGAPGIAGPP bmy_06856T0/1-740 GPTGPPGPQG PPGEQGPEGT GKPGAPGAPG QPGVPGTKGH PGAPGIAGPP BACU020306/1-593 GPTGPPGPQG PPGEQGPEGT GKPGAPGAPG QPGVPGTKGH PGAPGIAGPP 351 400 ENSBTAP00000004006/1-674 GAPGFGKPGL PGLKGQRGPV GLPGSPGAKG EQGPAGHPGE AGLPGPSGNM ENSP00000327368/1-680 GPPGFGKPGL PGLKGERGPA GLPGGPGAKG EQGPAGLPGK PGLTGPPGNM ENSTTRP00000014422/1-614 GAPGFGKPGL PGLKGQRGPV GLPGGPGAKG EQGPAGHPGE PGLTGPPGNM bmy_06856T0/1-740 GAPGFGKPGL PGLKGQRGPV GLPGGLGAKG EQGPAGHPGE PGLTGPPGNM BACU020306/1-593 GAPGFGKPGL PGLKGQRGPV GLPGGPGAKG EQGPAGHPGE PGLTGPPGNM 401 450 ENSBTAP00000004006/1-674 GPQGPKGIPG NPGLPGPKGE MGPVGPAGNP GAKGERGSSG LDGKPGYPGE ENSP00000327368/1-680 GPQGPKGIPG SHGLPGPKGE TGPAGPAGYP GAKGERGSPG SDGKPGYPGK ENSTTRP00000014422/1-614 GPQGPKGIPG NHGIPGPKGE MGPVGPAGYP GAKGERGSSG LDGKPGYPGE bmy_06856T0/1-740 GPQGPKGIPG NHGIPGPKGE MGPVGPAGYP GAKGERGSSG LDGKPGYPGE BACU020306/1-593 GPQGPKGIPG NHGIPGPKGE MGPVGPAGYP GAKGERGSSG LDGKPGYPGE 451 500 ENSBTAP00000004006/1-674 PGLNGPKGNP GLPGPKGDPG IAGSPGLPGP VGPAGAKGVP GHNGEAGPRG ENSP00000327368/1-680 PGLDGPKGNP GLPGPKGDPG VGGPPGLPGP VGPAGAKGMP GHNGEAGPRG ENSTTRP00000014422/1-614 PGLSGPKGNP GLPGPKGDPG IRGRPGLPGP EGPTGAKGVP GHNGEAGPRG bmy_06856T0/1-740 PGLSGPKGNP GLPGPKGDPG IRGPPGLPGP AGPAGAKGVP GHNGEAGPRG BACU020306/1-593 PGLSGPKGNP GLPGPKGDPG IRGPPGLPGP AGPAGAKGVP GHNGEAGPRG 501 550 ENSBTAP00000004006/1-674 VPGIPGTRGP IGPPGIPGFP GSKGDVGTPG PPGPAGIAVK GLNGPTGPPG ENSP00000327368/1-680 APGIPGTRGP IGPPGIPGFP GSKGDPGSPG PPGPAGIATK GLNGPTGPPG ENSTTRP00000014422/1-614 APGTPGTRGP IGPPGIPGFP GSKGDPGTPG PPGPAGIATK GLNGPT---G bmy_06856T0/1-740 APGMPGTRGP IGPPGIPGFP GSKGDPGTPG PPGPAGIATK GLNGPT---G BACU020306/1-593 APGMPGTRGP IGPPGIPGFP GSKGDPGTPG PPGPAGIATK GLNGPT---G 551 600 ENSBTAP00000004006/1-674 PPGPRGNAGE PGLP---GPP GPPGPPGQAA LPEDFVKAGQ R------PFV ENSP00000327368/1-680 PPGPRGHSGE PGLP---GPP GPPGPPGQAV MPEGFIKAGQ RPSLSGTPLV ENSTTRP00000014422/1-614 PPGPRGYAGE PGLP---GPP GPPGPPGQAV LPEGFVKAGQ R------PFV bmy_06856T0/1-740 PPGPRGHAGE PGLPGRPGPP GPPGPPGQAV LPEGFVKAGQ R------PFI BACU020306/1-593 PPGPRGHTGE PGLPGRPGPP GPPGPPGQA- ---------- ---------- 601 650 ENSBTAP00000004006/1-674 SANQGVTGMP VSAFTVILSK AYPAIGTPIP FDKILYNKQQ HYDPRTGIFT ENSP00000327368/1-680 SANQGVTGMP VSAFTVILSK AYPAIGTPIP FDKILYNRQQ HYDPRTGIFT ENSTTRP00000014422/1-614 GANQGVTGMP VSAFTVILSK AYPTIGTPIP FDKILYNRQQ HYDPRTGIFT bmy_06856T0/1-740 SANQGVTGMP VSAFTVILSK AYPTISTPIP FDKILYNRQQ HYDPRTGIFT BACU020306/1-593 ---------P VSAFTVILSK AYPTIGTPIP FDKILYNRQQ HYDPRTGIFT 651 700 ENSBTAP00000004006/1-674 CKIPGIYYFS YHIHVKGTHA WVGLYKNGTP VMYTYDEYIK GYLDQASGSA ENSP00000327368/1-680 CQIPGIYYFS YHVHVKGTHV WVGLYKNGTP VMYTYDEYTK GYLDQASGSA ENSTTRP00000014422/1-614 CRIPGIYYFS YHVHVKGTHA WVGLYKNGTP VMY------- ---------- bmy_06856T0/1-740 CRIPGIYYFS YHMHVKGTHA WVGLYKNGTP VMYTYDEYIK GYLDQASGSA BACU020306/1-593 CRIPGIYYFS YHVHVKGTHA WVGLYKNGTP VMY------- ---------- 701 750 ENSBTAP00000004006/1-674 VIDLTENDQV WLQLPNAGSN GLYSSEYVHS SFSGFLVAPM --------- ENSP00000327368/1-680 IIDLTENDQV WLQLPNAESN GLYSSEYVHS SFSGFLVAPM --------- ENSTTRP00000014422/1-614 ---------- ---------- ---------- ---------- --------- bmy_06856T0/1-740 IIDLTENDQV WLQLPNAGSN GLYSSEALAY VPWAFDSSEI ITDVKDFKM BACU020306/1-593 ---------- ---------- ---------- ---------- ---------