KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:22:45 2014 Check: 00 .. Name: ENSTTRP00000002460/1-221 Len: 237 Check: 9974 Weight: 1.00 Name: ENSBTAP00000004020/1-236 Len: 237 Check: 3171 Weight: 1.00 Name: ENSP00000260247/1-237 Len: 237 Check: 4187 Weight: 1.00 Name: bmy_14915T0/1-131 Len: 237 Check: 5019 Weight: 1.00 Name: BACU014502/1-152 Len: 237 Check: 2756 Weight: 1.00 // 1 50 ENSTTRP00000002460/1-221 MPVKKKRKSP GVAAAVAEDG GLKKCKISSY CRSQPPARLI SGEEHFSSKK ENSBTAP00000004020/1-236 MPVKKKRKS- GVAAAAAEDG GLKKCKISSY CRSQPPARLI SGEEHFSSKK ENSP00000260247/1-237 MPVKKKRKSP GVAAAVAEDG GLKKCKISSY CRSQPPARLI SGEEHFSSKK bmy_14915T0/1-131 ---------- ---------- ---------- ---------- ---------- BACU014502/1-152 MPVKKKRKSP GVAAAVAEDG GLKKCKIS-- ---------- ---------- 51 100 ENSTTRP00000002460/1-221 CLAWFYEYAG PDEVVGPEGM EKFCEDIGVE PEN----VLA WKL------- ENSBTAP00000004020/1-236 CLAWFYEYAG PDEVVGPEGM EKFCEDIGVE PENIIMLVLA WKLEAESMGF ENSP00000260247/1-237 CLAWFYEYAG PDEVVGPEGM EKFCEDIGVE PENIIMLVLA WKLEAESMGF bmy_14915T0/1-131 MFDFF----- ---------- ---------- ---------- ---------- BACU014502/1-152 ---------- ---------- ---------- ---------- ---------- 101 150 ENSTTRP00000002460/1-221 ----ELLTGG KTSLCDCTEK LQ-KFDFLRS QLNDISSFKN IYRYAFDFAR ENSBTAP00000004020/1-236 FTKEEWLKGM TSLQCDCTEK LQNKFDFLRS QLNDISSFKN IYRYAFDFAR ENSP00000260247/1-237 FTKEEWLKGM TSLQCDCTEK LQNKFDFLRS QLNDISSFKN IYRYAFDFAR bmy_14915T0/1-131 ---------- -NLRCDCTEK LQNKFDFLRS QLNDISSFKN IYRYAFDFAR BACU014502/1-152 ---------- ---RCDCTEK LQNKFDFLRS QLNDISSFKN IYRYAFDFAR 151 200 ENSTTRP00000002460/1-221 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXQSKYR VMNKDQWYNV ENSBTAP00000004020/1-236 DKDQRSLDID TAKSMLALLL GRTWPLFSVF YQYLEQSKYR VMNKDQWYNV ENSP00000260247/1-237 DKDQRSLDID TAKSMLALLL GRTWPLFSVF YQYLEQSKYR VMNKDQWYNV bmy_14915T0/1-131 DKDQRSLDID TAKSMLALLL GRTWPLFSVF YQYLEQSKYR VMNKDQWYNV BACU014502/1-152 DKDQRSLDID TAKSMLALLL GRTWPLFSVF YQYLEQSKYR VMNKDQWYNV 201 250 ENSTTRP00000002460/1-221 LEFSRTVHAD LSNYDEDGAW PVLLDEFVEW QKVRQTS ENSBTAP00000004020/1-236 LEFSRTVHAD LSNYDEDGAW PVLLDEFVEW HKVRQAS ENSP00000260247/1-237 LEFSRTVHAD LSNYDEDGAW PVLLDEFVEW QKVRQTS bmy_14915T0/1-131 LEFSRTVHAD LSNYDEDGAW PVLLDEFVEW QKVRQTS BACU014502/1-152 LEFSRTVHAD LSNYDEDGAW PVLLDEFVEW QKVRQTS