KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:22:46 2014 Check: 00 .. Name: ENSTTRP00000011589/1-688 Len: 710 Check: 8125 Weight: 1.00 Name: ENSP00000254260/1-686 Len: 710 Check: 8110 Weight: 1.00 Name: ENSBTAP00000004021/1-686 Len: 710 Check: 9423 Weight: 1.00 Name: bmy_21714T0/1-553 Len: 710 Check: 6984 Weight: 1.00 Name: BACU000564/1-686 Len: 710 Check: 1996 Weight: 1.00 // 1 50 ENSTTRP00000011589/1-688 MTDXXXXXXX XXXXXXXXXX XXXGCNPLAQ TGRSKLQNQR AALNQQILKA ENSP00000254260/1-686 MTDALLPAAP QPLEKENDGY FRKGCNPLAQ TGRSKLQNQR AALNQQILKA ENSBTAP00000004021/1-686 MTDTLLPAAP QPLEKEGNCY FRKGCNPLAQ TGRSKLQNQR AALNQQILKA bmy_21714T0/1-553 ---MLLS--- ---------- ------PLS- ---------- ---------- BACU000564/1-686 MTDTLLPAAP QPLEKEGDGY FRKGCNPLAQ TGRSKLQNQR AALNQQILKA 51 100 ENSTTRP00000011589/1-688 VRMRTGAENL LKAATNQKVR EQVRLELSFL NSDLQMLKEE LEGLNISVGV ENSP00000254260/1-686 VRMRTGAENL LKVATNSKVR EQVRLELSFV NSDLQMLKEE LEGLNISVGV ENSBTAP00000004021/1-686 MRMRTGAENL LKAATNQKVR EQVRLELSFL NSDLQMLKEE LEGLNISVGV bmy_21714T0/1-553 ---------F NRAATNQKVR EQVRLELSFL NSDLQMLKEE LEGLNISVGV BACU000564/1-686 VRMRTGAENL LKAATNQKVR EQVRLELSFL NSDLQMLKEE LEGLNISVGV 101 150 ENSTTRP00000011589/1-688 YQSTEEAFTI PLIPLGLKET KDVDFSVVLK DFILEHYSED SYLYEDEIAD ENSP00000254260/1-686 YQNTEEAFTI PLIPLGLKET KDVDFAVVLK DFILEHYSED GYLYEDEIAD ENSBTAP00000004021/1-686 YQNTEEAFTI PLIPLGLKET KDVDFSVALK DFILEHYSED SYLYEDEIAD bmy_21714T0/1-553 YQSTEEAFTI PLIPLGLKET KDVDFSVFLK DFILEHYSED SYLYEDEIAD BACU000564/1-686 YQSTEEAFTI PLIPLGLKET KDVDFSVVLK DFILEHYSED SYLYEDEIAD 151 200 ENSTTRP00000011589/1-688 LMDLRQACRT PSRDEAGVEL LMSYFIQLGF VESRFFPPTR QMGILFTWYD ENSP00000254260/1-686 LMDLRQACRT PSRDEAGVEL LMTYFIQLGF VESRFFPPTR QMGLLFTWYD ENSBTAP00000004021/1-686 LMDLRQACRT PSRNEAGVEL LMSYFMQLGF VESRFFPPTR QMGILFTWYD bmy_21714T0/1-553 LMDLRQACRT PSRDEAGVEL LMSYFIQLGF VESRFFPPTR QMGILFTWYD BACU000564/1-686 LMDLRQACRT PSRDEAGVEL LMSYFIQLGF VESRFFPPTR QMGILFTWYD 201 250 ENSTTRP00000011589/1-688 SLTGVPVSQQ NLLLEKASIL FNIGALYTQI GTRCNRQTEA GLQSTVDAFQ ENSP00000254260/1-686 SLTGVPVSQQ NLLLEKASVL FNTGALYTQI GTRCDRQTQA GLESAIDAFQ ENSBTAP00000004021/1-686 SLTGVPVSQQ NLLLEKASIL FNIGALYTQI GTRCNRQTEA GLESTVDAFQ bmy_21714T0/1-553 SLTGVPVSQQ NLLLEKASIL FNIGALYTQI GTRCNRQTEA GLQSAVDAFQ BACU000564/1-686 SLTGVPVSQQ NLLLEKASIL FNIGALYTQI GTRCNRQTEA GLQSAVDAFQ 251 300 ENSTTRP00000011589/1-688 RAAGVLNYLK ETFTHTPSYD MSPAMLSVLV KMMLAQAQES TFEKICLSGI ENSP00000254260/1-686 RAAGVLNYLK DTFTHTPSYD MSPAMLSVLV KMMLAQAQES VFEKISLPGI ENSBTAP00000004021/1-686 RAAGVLNYLK ETFTHTPSYD MSPAMLSVLV KMMLAQAQES TFEKVCLTGL bmy_21714T0/1-553 RAAGVLNYLK ETFTHTPSYD MSPAMLSVLV KMMLAQAQES TFEKICLSGI BACU000564/1-686 RAAGVLNYLK ETFTHTPSYD MSPAMLSVLV KMMLAQAQES TFEKICLSGI 301 350 ENSTTRP00000011589/1-688 QNEFFVLVKV AQEAAKVGEV YRHLYTAMNQ EPVKENIPYS WASLACVKAH ENSP00000254260/1-686 RNEFFMLVKV AQEAAKVGEV YQQLHAAMSQ APVKENIPYS WASLACVKAH ENSBTAP00000004021/1-686 QNEFFLLVKV AQEAAKVGEV YRQLHTAMNQ EPVKENIPYS WASLACVKAH bmy_21714T0/1-553 QNEFFMLVKV AQEAAKVGEV YRQLHTAMNQ EPVKENIPYS WASLACVKAH BACU000564/1-686 QNEFFMLVKV AQEAAKVGEV YRQLHTAMNQ EPVKENIPYS WASLACVKAH 351 400 ENSTTRP00000011589/1-688 HYEALAHYFT ATLLIDHQLK PGSDEDHQEK CLSQLYDHMP EGMTPLATLK ENSP00000254260/1-686 HYAALAHYFT AILLIDHQVK PGTDLDHQEK CLSQLYDHMP EGLTPLATLK ENSBTAP00000004021/1-686 HYEALAHYFT ATLLIDHQLK PGEDEDHQEK CLSQLYSHMP EGLTPLATLK bmy_21714T0/1-553 HYEALAHYFT ATLLIDHR-- ---------- ---------- ---------- BACU000564/1-686 HYEALAHYFT ATLLIDHRLK PGTDEDHQEK CLSQLYDHMP EGMTPLATLK 401 450 ENSTTRP00000011589/1-688 NVHQRQRLGK SHLCRAVTHH EESVREASLC KKLRNIEVLQ EVLSAAHQRS ENSP00000254260/1-686 NDQQRRQLGK SHLRRAMAHH EESVREASLC KKLRSIEVLQ KVLCAAQERS ENSBTAP00000004021/1-686 NVHQRQLLGK SHLCQAVTHH EESMREASLC KKLRNIDVLQ EVLSAAHERS bmy_21714T0/1-553 ---------- ---------- ---------- ---------- ---------- BACU000564/1-686 NVHQRQQLGK SHLCRAVTHH EESVREASLC KKLRNIEVLQ EVLSAAHQRS 451 500 ENSTTRP00000011589/1-688 RLKYTQLRDD YDLLSLIDVP DIIXXXXXXX XXXXXXXXXX XXXXXXXXXG ENSP00000254260/1-686 RLTYAQHQEE DDLLNLIDAP SVVAKTEQEV DIILPQFSKL TVTDFFQKLG ENSBTAP00000004021/1-686 QLKYTQLRED DDLLNLTDAP DIVSKTEREV EIIVPQFSKV TVTDFFQKLG bmy_21714T0/1-553 ---------- ---------- ---SKTEREV EIIPPQFSKV TVTDFFQKLG BACU000564/1-686 RLKYTQLXXX X--LNLIDVP DIISKTEREV EIIPPQFSKV TVTDFFQKLG 501 550 ENSTTRP00000011589/1-688 PLSVFSANKR WTPPRSIHFT AEEGDLGFTL RGNSPVQVHF LDPYCSAAV- ENSP00000254260/1-686 PLSVFSANKR WTPPRSIRFT AEEGDLGFTL RGNAPVQVHF LDPYCSASV- ENSBTAP00000004021/1-686 PLSVFSANKR WTAPRSIHFT AEEGDLGFTL RGNSPVQVHF LDPYCSAAA- bmy_21714T0/1-553 PLSVFSAXKR WTPPRSIHFT AEEGDLGFTL RGNSPVQVHF LDPYCSAAVS BACU000564/1-686 PLSVFSANKR WTPPRSIHFT AEEGDLGFTL RGSSPVQVHF LDPYCSAAV- 551 600 ENSTTRP00000011589/1-688 ---------- ---------- -AGAKEGDYI VSIQDVDCKW LTVSEVMKLL ENSP00000254260/1-686 ---------- ---------- -AGAREGDYI VSIQLVDCKW LTLSEVMKLL ENSBTAP00000004021/1-686 ---------- ---------- -AGTKEGDYI VSIQDVDCKW LTLSEVMKML bmy_21714T0/1-553 VDPSKYWEQN SLASLQTVKL LAGAKEGDYI VSIQDVDCKW LTVSEVMKLL BACU000564/1-686 ---------- ---------- -AGAKEGDYI VSIQDVDCKW LTVSEVIKLL 601 650 ENSTTRP00000011589/1-688 KSFGQNDIEM KVVSLLDATS SMXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSP00000254260/1-686 KSFGEDEIEM KVVSLLDSTS SMHNKSATYS VGMQKTYSMI CLAIDDDDKT ENSBTAP00000004021/1-686 KSFGQDDIEM KVVSLLDATS TMHSKCATYS VGMQKTYSMI CLGIDVDDKT bmy_21714T0/1-553 KSFGQNDIEM KVVSLLDATS SMHSKCATYS VGMQKTYSMI CLAIDDDDKT BACU000564/1-686 KSFGQNDIEM KVVSLLDATS SMHSKCATYS VGMQKTYSMI CLAIDDDDNT 651 700 ENSTTRP00000011589/1-688 XXXXXXXXKL SFLSWNTNKN RQKSASTLCL PSVGVRVAGP PVKKKLPSPF ENSP00000254260/1-686 DKTKKISKKL SFLSWGTNKN RQKSASTLCL PSVGAAR--P QVKKKLPSPF ENSBTAP00000004021/1-686 DKTKKVSKKL SFLSWGTNKN RQKSASTLCL PSVGVTM--P PVKKKLSSPF bmy_21714T0/1-553 DKTKKISKKL SFLSWSTNKN RQKSASTLCL PSVGVSVAGP PVKKKLPSPF BACU000564/1-686 NKTKKISKKL SFLSWSTNKN RQKSASTLCL PSVGVRVAGP PVKKKLPSPF 701 750 ENSTTRP00000011589/1-688 SLLTSDSSLY ENSP00000254260/1-686 SLLNSDSSWY ENSBTAP00000004021/1-686 SLLNTDSSLY bmy_21714T0/1-553 SLLTSDSSLY BACU000564/1-686 SLLTSDSSLY