KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:22:51 2014 Check: 00 .. Name: ENSP00000351593/1-940 Len: 1102 Check: 9309 Weight: 1.00 Name: ENSBTAP00000004034/1-904 Len: 1102 Check: 1853 Weight: 1.00 Name: bmy_01591T0/1-653 Len: 1102 Check: 5002 Weight: 1.00 Name: BACU003321/1-1041 Len: 1102 Check: 6263 Weight: 1.00 Name: ENSTTRP00000009724/1-939 Len: 1102 Check: 1666 Weight: 1.00 // 1 50 ENSP00000351593/1-940 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000004034/1-904 ---------- ---------- ---------- ---------- ---------- bmy_01591T0/1-653 MGHEGGRDPP QDWLAPWRGA GPAGLLARLD GRRLQNPGDE FPELVSASKG BACU003321/1-1041 -----MTDKV NVCAKVCRLG KGSFVIDPAP SEVVPEVLQQ FPELVSASKG ENSTTRP00000009724/1-939 ---------- ---------- ---------- ---------- ---------- 51 100 ENSP00000351593/1-940 ---------- ------MADE ALAGLDEGAL RKLLEVTADL AERRRIRSAI ENSBTAP00000004034/1-904 ---------- ------MADE TLAGLDEGAL RKLLEVTTDL AERRRIRSAI bmy_01591T0/1-653 TGELTRRGRT ELGASKMADE TLAGLDEGAL RKLLEVTADL AERRRIRSAI BACU003321/1-1041 TGELTRRGRT ELGASKMADE TLAGLDEGAL RKLLEVTADL AERRRIRSAI ENSTTRP00000009724/1-939 ---------- ------MADE TLAGLDEGAL RKLLEVTADL AERRRIRSAI 101 150 ENSP00000351593/1-940 RELQRQELER EEEALASKRF RAERQDNKEN WLHSQQREAE QRAALARLAG ENSBTAP00000004034/1-904 RELQRQELER EEEALASKRF RAERQDNKEN WLHSQQREAE QRAALARLAG bmy_01591T0/1-653 RELQRQELER EEEALASKRF RAERQDNKEN WLHSQQREAE QRAALARLAG BACU003321/1-1041 RELQRQELER EEEALASKRF RAERQDNKEN WLHSQQREAE QRAALARLAG ENSTTRP00000009724/1-939 RELQRQELER EEEALASKRF RAERQDNKEN WLHSQQRKAE QQAALARLAG 151 200 ENSP00000351593/1-940 QLESMNDVEE LTALLRSAGE YEERKLIRAA IRRVRAQEIE AATLAGRLYS ENSBTAP00000004034/1-904 RLESMNDVEE LTALLRGAAE YEERKLIRAA IRRVRAQEIE AATLAGRLYS bmy_01591T0/1-653 RLESMSDVEE LTTLLRGAAE YEERKLIRAA IRRVRAQEIE AATLAGRLCS BACU003321/1-1041 RLESMSDVEE LTTLLRGAAE YEERKLIRAA IRRVRAQEIE AAILAGRLCS ENSTTRP00000009724/1-939 RLESMSDVEE LTTLLRGAAE YEERKLIRAA IRRVRAQEIE AATLAGRLCS 201 250 ENSP00000351593/1-940 GRPNSGSRED SKGLAAHRLE QCEVPEREEQ EQQAEVSKPT PTPEGTSQDV ENSBTAP00000004034/1-904 GRPNSGSRED SKGQAARRLE PCEVPKPEEQ KQQVEVPEPT PTPSSSSRDV bmy_01591T0/1-653 GRPNSGSRED SKGRAAHRLN RCEVPKPEEQ EQQAEVPEPT PTPSGTSYDV BACU003321/1-1041 GRPNSGSRED SKGRAAHRLN RCEVPKPEEQ EQQAEVPEPT PTPSGTSYDV ENSTTRP00000009724/1-939 GRPSSGSRED SKGRAAHRLD RCEVPKPEEQ EQQAEVPEPT PTPNGTSHDV 251 300 ENSP00000351593/1-940 TTVTLLLRAP PGSTSSSPAS PSSSPTPASP EPPLEPA-EA QCLTAEVPGS ENSBTAP00000004034/1-904 TTVTLLLRAP PRDTPSPPAS ADGSPTTTSP EPPLEPAEEA LCPAPEALGS bmy_01591T0/1-653 TTVTLLLRAP PGGTPSSPAS ADSSPTTTSP EPPLEPA-EA PCPATEALGS BACU003321/1-1041 TTVTLLLRAP PGGTPSSPAS ADSSPTTTSP EPPLEPA-EA PCPATEALGS ENSTTRP00000009724/1-939 TTVTLLLRAP PGGTLSSPAS AGSSPTTTSP EPPLEPA-EA PRPATEALGG 301 350 ENSP00000351593/1-940 PEPPPSPPKT TSPEPQESPT LPSTEGQVVN KLLSGPKETP AAQSPTRGPS ENSBTAP00000004034/1-904 PEPPPSPPRA TSPEPQEPPA TPSTDGQVVD KFPPSPTEPP AAQGPTKGRS bmy_01591T0/1-653 PEPPPSPPRA ASPEPQEPPA TPSTEGQVVN KLLRGPTEPP AAHGPTKGPS BACU003321/1-1041 PEPPPSPPRA ASPEPQEPPA TPSTEGQVVN KLLRGPTEPP AAHGPTKGPS ENSTTRP00000009724/1-939 PKPPPSPPRA ASPEPQEPPA TPSTEGQVVN KLLPGPTEPS AADGPTKGLS 351 400 ENSP00000351593/1-940 DTKRA----- ---------- ---------- -----DVAGP RPCQRSLSVL ENSBTAP00000004034/1-904 DTKRA----- ---------- ---------- -----DLADP RPCQLSLSVL bmy_01591T0/1-653 DTKRAGVEER TMRGGPHHPL LSLLPHGRHR LPMLPDLAGP RPCQRSLSVL BACU003321/1-1041 DTKRA----- ---------- ---------- ---------- ---------- ENSTTRP00000009724/1-939 DTKRA----- ---------- ---------- -----DLAGP RPCQRSLSVL 401 450 ENSP00000351593/1-940 SPRQPAQNRE STPLASGPSS FQRAGSVRDR VHKFTSDSPM AARLQDGTPQ ENSBTAP00000004034/1-904 SPRQPAQNRE PTPLASGPSP FQRAGSVRDR VRKFTSDSPM AAGLQECPPR bmy_01591T0/1-653 SPRQPVQNRE PTPLASGPSP FRRAGSVRDR VRKFTSDSPM AAGLQEGPLR BACU003321/1-1041 ---------E PTPLASGPSP FQRAGSVRDR VRKFTSDSPM AAGLQEGPLR ENSTTRP00000009724/1-939 SPRQPVQNRE PTPLASGPSL FQRAGSVRDR VRKFTSDSPM AAGLQEGPLR 451 500 ENSP00000351593/1-940 AALSPLTPAR LLGPSLTSTT PASSSSGSSS RGPSDTSSRF SKEQRGVAQP ENSBTAP00000004034/1-904 AALGPSTPAR LPGPSHTSTT PAASSS--SS SGPSS----- ----RGTARP bmy_01591T0/1-653 AALGPSTPGR LPGSSHISTT PASSSSGPSS RGPSDTSSQF NKDQRGTARP BACU003321/1-1041 AALGPSTPAR LPGSSHISTT PASSSSGPSS RGPSDTSSQF NKDQRGTARP ENSTTRP00000009724/1-939 AALGPSTPAR LPGSSHISTT PASSSRGPSS RGPSDTSSQF NKDQRGTARP 501 550 ENSP00000351593/1-940 LAQLRSCPQE EGPRGRGLAA RPLENRAGGP VARSEEPGAP LPVAVGTAEP ENSBTAP00000004034/1-904 LAQLQSCPRE EGPRGRGLAV RSLENRAGGP VAGSEEPSAP LPVAVGAAEP bmy_01591T0/1-653 LAQLQSCPRE EGPRGRGLAV RPLENRAGGP MARSEAPSAP LAVAVGTAEP BACU003321/1-1041 LAQLQSCPRE EGPRGRGLAV RSLENRAGGP MARSEAPSAP LAVAVGTAEP ENSTTRP00000009724/1-939 LAQLQSCPRE EGPRGRGLAV RPLENRAGGP MARSEAPSAP LAVAVGTAEP 551 600 ENSP00000351593/1-940 GGSMKTTFTI EIKDGRGQAS TGRVLLPTGN QRAELTLGLR APPTLLSTSS ENSBTAP00000004034/1-904 GASMKTTFTI EIKDGRGQAS TGRVLLPTGN QRAELTLGLR APPTLISTSS bmy_01591T0/1-653 GASMKTTFTI EIKDGRGQAS TGRVLLPTGN QRAELTLGLR APPTLLSTSS BACU003321/1-1041 GASMKTTFTI EIKDGRGQAS TGRVLLPTGN QRAELTLGLQ APPTLLSTSS ENSTTRP00000009724/1-939 GANMKTTFTI EIKDGRGQAS TGRVLLPTGN QRAELMLGLR APPTLLSTSS 601 650 ENSP00000351593/1-940 GGKSTITRVN SPGTLARLGS VTHVTSFSHA PPSSRGGCSI K--------- ENSBTAP00000004034/1-904 GGKSTITHIS SPGNLARLGS VTHVTSFSPA SLGSRGGCSI K--------- bmy_01591T0/1-653 GGKSTITHIS SPGNLARLGS VTHVTSFSHA SPAAKTDCQT E--------- BACU003321/1-1041 GGKSTITHIS SPGNLARLGS VTHVTSFSHA SPGSRGGCSI KAAEDAGTPV ENSTTRP00000009724/1-939 GGKSTITHIS SPGNLARLGS VTHVTSFSHA SPGSRGGCSI K--------- 651 700 ENSP00000351593/1-940 ---------- ---------- --MEAEPAEP LAAAVEAANG AEQTRVNKAP ENSBTAP00000004034/1-904 ---------- ---------- --MEPEPAEP PSAAVEVANG AEQTRVDKAP bmy_01591T0/1-653 ---------- ---------- ---------- ---------- ---------- BACU003321/1-1041 AHPPAFSTRR RSSASPAHSS SLMEPEPAEP PSAAVEVANG AEQTRVDKAP ENSTTRP00000009724/1-939 ---------- ---------- --MEPEPAEP PSAAVEVANG AEQTRVDKAP 701 750 ENSP00000351593/1-940 EGRSPLSAEE LMTIEDEGVL DKMLDQSTDF EERKLIRAAL RELRQRKRDQ ENSBTAP00000004034/1-904 GSRSPLSAEE LMAIEDESVL DKMLDQTTDF EERKLIRAAL RELRQRKRDQ bmy_01591T0/1-653 ---------- ---------- ---------- ---------- ---------- BACU003321/1-1041 ERRSPLSAEE LMVIEDESVL DKMLDQTTNF EERKLIRAAL RELRQRKRDQ ENSTTRP00000009724/1-939 ERRSPLSTEE LMTIEDESVL DKMLDQTTDF EERKLIRAAL RELRQRKRDQ 751 800 ENSP00000351593/1-940 RDKERERRLQ EARGRPGEGR GNTATETTTR HSQRAADGSA VSTVTKTERL ENSBTAP00000004034/1-904 RDKERERRLQ EARARPGEGR GNTTTKTSTR HSQQTADGSA VSTVTKTERL bmy_01591T0/1-653 ---------- ---------- ---------- ---------- ---------- BACU003321/1-1041 RDKERERRLQ ETRARPGEGR GNTATKTTTR HSQQTADGSA VSTVTKTERL ENSTTRP00000009724/1-939 RDKERERRLQ ETRARPGEGR GNTATKTTTR HSQQTADGSA VSTVTKTERL 801 850 ENSP00000351593/1-940 VHSNDGTRTA RTTTVESSFV RRSENGSGST MMQTKTFSSS SSSKKMGSIF ENSBTAP00000004034/1-904 VQSNDGTRTA RTTTVESSFV RRSENGGGST MMQTKTF-SS SSSKKMGSIF bmy_01591T0/1-653 ---------- ---------- ---------- ---------- ---------- BACU003321/1-1041 VHSNDGRRTA RTTTVESSFV RRSENGGGST MMQTKTF-SS SSSKKMGSIF ENSTTRP00000009724/1-939 VHSNDGRRTA RTTTVESSFV RRSENGGGST MMQTKTF-SS SSSKKMGSIF 851 900 ENSP00000351593/1-940 DREDQASPRA GSLAALEKRQ AEKKKELMKA QSLPKTSASQ ARKAMIEKLE ENSBTAP00000004034/1-904 DREDEASPRS GSLAALEKRQ AEKKKELMKA QSLPKTSASQ ARKAMIEKLE bmy_01591T0/1-653 ---------- ---------- ---------- ---------- ---------- BACU003321/1-1041 DREDEASPRP GSLAALEKRQ AEKKKELMKA QSLPKTSASQ ARKAMIEKLE ENSTTRP00000009724/1-939 DREDEASPRP GSLAALEKLQ AEKKKELMKA QSLPKTSASQ ARKAMIEKLE 901 950 ENSP00000351593/1-940 KEGAAGSPGG PRAAVQRSTS FGVPNANSIK QMLLDWCRAK TRGYEHVDIQ ENSBTAP00000004034/1-904 KEGAAGSPGG PRMAVQRSTS FGVPNANSIK QMLLDWCRAK TRGYEHVDIQ bmy_01591T0/1-653 ---------- --AAVPTTAP FVTPP----- ---------- ---------- BACU003321/1-1041 KEGAACSSGG PRAAVQRSTS FGVPNANSIK QMLLDWCRAK TRGYEHVDIQ ENSTTRP00000009724/1-939 KEGTACSSGG PRAAVQRSTS FGVHNANSIK QMLLDWCRAK TRGYEHVDIQ 951 1000 ENSP00000351593/1-940 NFSSSWSDGM AFCALVHNFF PEAFDYGQLS PQNRRQNFEV AFSSAETHAD ENSBTAP00000004034/1-904 NFSSSWSDGM AFCALVHNFF PEAFDYGQLS PQNRRQNFEV AFSSAETHAD bmy_01591T0/1-653 ---------- ---------- ---------- ---------- ---------- BACU003321/1-1041 NFSSSWSDGM AFCALVHNFF PEAFDYGQLS PQNRRQNFEV AFSSAETHAD ENSTTRP00000009724/1-939 NFSSSWSDGM AFCALVHNFF PEAFDYGQLS PQNRRQNFEV AFSSAXXXXX 1001 1050 ENSP00000351593/1-940 CPQLLDTEDM VRLREPDW-- ---------- ---------- ---------- ENSBTAP00000004034/1-904 CPQLLDTEDM VRLREPDW-- ---------- ---------- ---------- bmy_01591T0/1-653 ---------- ---------- ---------- ---------- ---------- BACU003321/1-1041 CPQLLDTEDM VRLREPDWKC VYTYIQEFYR CLVQKGLGEE KTKAQREKGD ENSTTRP00000009724/1-939 XXXXXXXXXX XXXXXXXX-- ---------- ---------- ---------- 1051 1100 ENSP00000351593/1-940 --KMLVDCVP LVEVDDMMIM GKKPDPKCVF TYVQSLYNHL RRHELRLRGK ENSBTAP00000004034/1-904 ---------- ---------- ------KCVY TYIQEFYRCL VQKGL-VKTK bmy_01591T0/1-653 ---------- ---------- ---------- ---------- ---------- BACU003321/1-1041 CLKMLVDCVP LVEVEDMMIM GKKPDPKCVF TYVQSLYNHL RRHELRLHGK ENSTTRP00000009724/1-939 --XMLVDCVP LVEVEDMMIM GKKPDPKCVF TYVQSLYNHL RRHELRLRGK 1101 1150 ENSP00000351593/1-940 NV ENSBTAP00000004034/1-904 KS bmy_01591T0/1-653 -- BACU003321/1-1041 NV ENSTTRP00000009724/1-939 NV