KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:22:55 2014 Check: 00 .. Name: BACU005826/1-589 Len: 706 Check: 5321 Weight: 1.00 Name: ENSP00000315568/1-648 Len: 706 Check: 9136 Weight: 1.00 Name: ENSBTAP00000004049/1-616 Len: 706 Check: 4501 Weight: 1.00 Name: bmy_06476T0/1-612 Len: 706 Check: 2245 Weight: 1.00 Name: ENSTTRP00000003993/1-649 Len: 706 Check: 3189 Weight: 1.00 // 1 50 BACU005826/1-589 MEKNGLGGDS APRGPVLHIA VVGFHHKKGC Q--------- ---------- ENSP00000315568/1-648 MEKARRGGDG VPRGPVLHIV VVGFHHKKGC QVEFSYPPLI PGDGHDSHTL ENSBTAP00000004049/1-616 ---------- ---------- ---------- -VEFSYPPLI PGDGHDSHTL bmy_06476T0/1-612 MEKNGRGGDS APRGPVLHIA VVGFHHKKGC QVEFSYPPLI PGDGHDSHTL ENSTTRP00000003993/1-649 MEKNGRGGDS APRGPVLHIA VVGFHHKKGC QXXXXYPPLI PGDGHDSHTL 51 100 BACU005826/1-589 ---------- ---------- ---------- ---------- ---------- ENSP00000315568/1-648 PEEWKYLPFL ALPDGAHNYQ EDTVFFHLPP RNGNGATVFG ISCYRQIEAK ENSBTAP00000004049/1-616 PEEWKYLPFL ALPDGAHNYQ EDTVFFHLPP RNGNGATIYG ISCYRQIEAK bmy_06476T0/1-612 PEEWKYLPFL ALPDGAHNYQ EDTVFFHLPP RNGNGATVYG ISCYRQIEAK ENSTTRP00000003993/1-649 PEEWKYLPFL ALPDGAHNYQ EDTVFFHLPP RNGNGATVYG ISCYRQIEAK 101 150 BACU005826/1-589 ALKVRQADIT RETVQKSVCV LSKL------ ---------- ---------- ENSP00000315568/1-648 ALKVRQADIT RETVQKSVCV LSKLPLYGLL QAKLQLITHA YFEEKDFSQI ENSBTAP00000004049/1-616 ALKVRQADIT RETVQKSVCV LSKLPLYGLL QAKLQLITHA YFEEKDFSQI bmy_06476T0/1-612 ALKVRQADIT RETVQKSVCV LSKLPLYGLL QAKLQLITHA YFEEKDFSQI ENSTTRP00000003993/1-649 ALKVRQADIT RETVQKSVCV LSKLPLYGLL QAKLQLITHA YFEEKDFSQI 151 200 BACU005826/1-589 ----ELYEHM NSSLGGTSLE GSQVYLGLSP RDLVLHFRHK VLILFKLILL ENSP00000315568/1-648 SILKELYEHM NSSLGGASLE GSQVYLGLSP RDLVLHFRHK VLILFKLILL ENSBTAP00000004049/1-616 SILKELYEHM NSSLGGTSLE GSQVYLGLSP RDLVLHFRHK VLILFKLILL bmy_06476T0/1-612 SILKELYEHM NSSLGGTSLE GSQVYLGLSP RDLVLHFRHK VLILFKLILL ENSTTRP00000003993/1-649 SILKELYEHM NSSLGGTSLE GSQVYLGLSP RDLVLHFRHK VLILFKLILL 201 250 BACU005826/1-589 EKKVLFYISP VNKLVGALMT VLSLFPGMIE HGLSDSSQYR PRKSMSEDVG ENSP00000315568/1-648 EKKVLFYISP VNKLVGALMT VLSLFPGMIE HGLSDCSQYR PRKSMSEDGG ENSBTAP00000004049/1-616 EKKVLFYISP VNKLVGALMT VLSLFPGMIE HGLSDSSQYR PRKSMSEDAG bmy_06476T0/1-612 EKKV------ ---------- ---RFECMIE HGLSDSSQYR PRKSMSEDVG ENSTTRP00000003993/1-649 EKKVLFYISP VNKLVGALMT VLSLFPGMIE HGLSDSSQYR PRKSMSEDVG 251 300 BACU005826/1-589 LQESNPPEDE FVSMPAPDIS NTNLGTVEKI MMGNHGRDAA IKTEEPLFQV ENSP00000315568/1-648 LQESNPCADD FVSASTADVS HTNLGTIRKV MAGNHGEDAA MKTEEPLFQV ENSBTAP00000004049/1-616 LQESNPPADE FVSVPASDIS NTNLGTVKKI L-GNHGGDAA IKTEEPLFQV bmy_06476T0/1-612 LQESNPPEDE FVSMPAPDIS NTNLGTVEKI MMGNHGRDAA IKTEEPLFQV ENSTTRP00000003993/1-649 LQESNPTEDE FVSMPAPDIS NTNLETVEKI MMRNHGRDAA MKTEEPFFQV 301 350 BACU005826/1-589 DDDSSEGQEP NDSNQYLKPP SRPSPESSES DWETLDPSVL EESSLKEREQ ENSP00000315568/1-648 ED-SSKGQEP NDTNQYLKPP SRPSPDSSES DWETLDPSVL EDPNLKEREQ ENSBTAP00000004049/1-616 EDDSSE-QEA SDSNQYLKPP SRPSPESSES DWETLDPTVL EDSSLKEREQ bmy_06476T0/1-612 DDENSEGQEP NDSNQYLKPP SRPSPESSES DWETLDPSVL EDSSLKEREQ ENSTTRP00000003993/1-649 DDDSSEGQEP NDSNQYLKPP SRPSPESSES DWETLDPSVL EDSSLKEREQ 351 400 BACU005826/1-589 VGSEQTNSFP KESLPSDSPP ITVQPQANTG QVVLIPGLIS GLEEDRYGMP ENSP00000315568/1-648 LGSDQTNLFP KDSVPSESLP ITVQPQANTG QVVLIPGLIS GLEEDQYGMP ENSBTAP00000004049/1-616 VGSEQTNSFP KDSLPSDSPP ITVQPQANTG QVVLIPGLIS GLEEDQYGMP bmy_06476T0/1-612 VGSEQTDSFP KESLPSDSPP ITVQPQANTG QVVLIPGLIS GLEEDQYGMP ENSTTRP00000003993/1-649 VGSEQTNSFP KDSLPSDSPP ITVQPQANTG QVVLIPGIIS GLEEDQYGMP 401 450 BACU005826/1-589 LAIFTKGYLC LPYMALQQHH LLSDVTIRGF VAGATNILFR QQKHLSDAIV ENSP00000315568/1-648 LAIFTKGYLC LPYMALQQHH LLSDVTVRGF VAGATNILFR QQKHLSDAIV ENSBTAP00000004049/1-616 LAIFTKGYLC LPYMALQQHH LLSDVTIRGF VAGATNILFR QQKHLSDAIV bmy_06476T0/1-612 LAIFTKGYLC LPYMALQQHH LLSDVTIRGF VAGATNILFR QQKHLSDAIV ENSTTRP00000003993/1-649 LAIFTKGYLC LPYMALQQHH LLSDVTIRGF VAGATNILFR QQKHLSDAIV 451 500 BACU005826/1-589 EVEEALIQIH DPELRKLLNP TTADLRFSDY LVRHVTENRD DVFLDGTGWE ENSP00000315568/1-648 EVEEALIQIH DPELRKLLNP TTADLRFADY LVRHVTENRD DVFLDGTGWE ENSBTAP00000004049/1-616 EVEEALIQIH DPELRKLLNP TTADLRFADY LVRHVTENRD DVFLDGTGWE bmy_06476T0/1-612 EVEEALIQIH DPELRKLLNP TTADLRFSDY LVRHVTENRD DVFLDGTGWE ENSTTRP00000003993/1-649 EVEEALIQIH DPELRKLLNP TTADLRFADY LVRHVTENRD DVFLDGTGWE 501 550 BACU005826/1-589 GGDEWIRAQF AVYIHALLAA TLQLDNEKIL SDYGTTFVTA WKNTHNYRVW ENSP00000315568/1-648 GGDEWIRAQF AVYIHALLAA TLQLDNEKIL SDYGTTFVTA WKNTHNYRVW ENSBTAP00000004049/1-616 GGDEWIRAQF AVYIHALLAA TLQLDNEKIL SDYGTTFVTA WKNTHNYRVW bmy_06476T0/1-612 GGDEWIRAQF AVYIHALLAA TLQLDNEKIL SDYGTTFVTA WKNTHNYRVW ENSTTRP00000003993/1-649 GGDEWIRAQF AVYIHALLAA TLQLDNEKIL SDYGTTFVTA WKNTHNYRVW 551 600 BACU005826/1-589 NSNKHPALAE INPN------ ---------- --SVQNSERG KKLGNVMVTT ENSP00000315568/1-648 NSNKHPALAE INPNHPFQGQ YSVSDMKLRF SHSVQNSERG KKIGNVMVTT ENSBTAP00000004049/1-616 NSNKHPALAE INPNHPFQGQ YSVSDMKLRF SHSVQNSERG KKLGNVMVTT bmy_06476T0/1-612 NSNKHPALAE INPN------ ---------- --SVQNSERG KKLGNVMVTT ENSTTRP00000003993/1-649 NSNKHPALAE INPNHPFQGQ YSVSDMKLRF SHSVQNSERG KKLGNVMVTT 601 650 BACU005826/1-589 SRNVVQTGKA VASQKKETNV FAPRNVRCLE YRVKFKVPVF LQRGLLLPGA ENSP00000315568/1-648 SRNVVQTGKA V--------- ---------- ---------- ---GQSVGGA ENSBTAP00000004049/1-616 SRNVVQTGKA V--------- ---------- ---------- ---GQSVGGA bmy_06476T0/1-612 SRNVVQTGKA V--------- ---------- ---------- ---GQSVGGA ENSTTRP00000003993/1-649 SRNVVQTGKA V--------- ---------- ---------- ---GQSVGGA 651 700 BACU005826/1-589 DKVTRAVELD AANISLFRGP VPAALQALPW LGEPLCSRTD LSKFTVDKSP ENSP00000315568/1-648 FSSAKTAMSS --WLSTFTTS TSQSLTEP-- ---------- ---------P ENSBTAP00000004049/1-616 FSSAKTAMSS --WLSTFTSS TPQSLTEL-- ---------- ---------P bmy_06476T0/1-612 FSSAKTAMSS --WLSTFTSS TPQSLTEL-- ---------- ---------P ENSTTRP00000003993/1-649 FSSAKTAMSS --WLSTFTSS TPQSLTEL-- ---------- ---------P 701 750 BACU005826/1-589 DDPPVA ENSP00000315568/1-648 DEKP-- ENSBTAP00000004049/1-616 DGKP-- bmy_06476T0/1-612 DGKP-- ENSTTRP00000003993/1-649 DGKP--