KEY:
    ENSP* - Homo sapiens (Human)
    ENSBTA* - Bos taurus (Cow)
    ENSTTR* - Tursiops truncatus (Dolphin)
    bmy_* - Balaena mysticetus (Bowhead whale)
    BACU* - Balaenoptera acutorostrata (Minke whale)

Copy from below the line for a valid .msf file.

----------------------------------------------------------------------------------
                
NoName   MSF: 4  Type: P  Thu May 15 16:23:03 2014  Check: 00 ..

 Name: BACU015309/1-165          Len:    227  Check:  9189  Weight:  1.00
 Name: ENSBTAP00000004098/1-133  Len:    227  Check:  8545  Weight:  1.00
 Name: ENSTTRP00000003909/1-130  Len:    227  Check:  5821  Weight:  1.00
 Name: bmy_17970T0/1-185         Len:    227  Check:  902  Weight:  1.00

//


                          1                                                   50
BACU015309/1-165          MI-------- ---------- ---------- ---------- ---------- 
ENSBTAP00000004098/1-133  MIKRAAAAAI GG-------- ---------- ---------- ---------- 
ENSTTRP00000003909/1-130  MIKRAAAAAI GG-------- ---------- ---------- ---------- 
bmy_17970T0/1-185         MIKRTAAAAI GGGDFPGSPH RRAFSWPGSQ DGREALERWR CRECESCLTR 


                          51                                                 100
BACU015309/1-165          ---------- ----TLAVGA VPVVLGAVGF TGAGIAASSL AAKMMSAAAM 
ENSBTAP00000004098/1-133  ---------- ----ALAVAA VPAVLGAVGF TGAGIAASSL AAKMMSAAAV 
ENSTTRP00000003909/1-130  ---------- ----ALAVGA VPVVLSAMGF TGAGIAASSL AAKMMSAAAI 
bmy_17970T0/1-185         PPPLPEPRGS SPPTALAVGA VPVVLSAVGF TGAGIAASSL AAKMMSAAAI 


                          101                                                150
BACU015309/1-165          ANGGGVAAGS LVATLQSVGA AGLSTSSNIL LGSVGSAFGA LLGGRLLEKA 
ENSBTAP00000004098/1-133  ANGGGVAAGS LVATLQSVGA AGLSTSSNIL LGSIGSAFGA LLGG------ 
ENSTTRP00000003909/1-130  ANGGGVAAGS LVATLQSVGA AGLSTSSNIL LGSVGSAFGA CL-------- 
bmy_17970T0/1-185         ANGGGVAAGS LVATLQSVGA AGLSTSSNIL LGSVGSAFGA LLGG------ 


                          151                                                200
BACU015309/1-165          AGTELVGSEP GKDSKSSGNN PQSKCELWKD ARLQQQQEKA AGTELVGSEP 
ENSBTAP00000004098/1-133  -AKRASPSPP PGGPRPEGEQ PGENVPQVEP PKSPLGPEKH EK-------- 
ENSTTRP00000003909/1-130  --EVPPSSSP PGGPRAEGDQ PGENVPQVEP PKLPLDSEKH EK-------- 
bmy_17970T0/1-185         -AKKAPSSSP PAGPRAEGDQ PGENVPQVEP PKLPLSSEKH AK-------- 


                          201                                                250
BACU015309/1-165          GSLNNVYENR GNSVAFLEIV CGFYVGF 
ENSBTAP00000004098/1-133  ---------- ---------- ------- 
ENSTTRP00000003909/1-130  ---------- ---------- ------- 
bmy_17970T0/1-185         ---------- ---------- -------