KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:23:04 2014 Check: 00 .. Name: ENSTTRP00000009221/1-1154 Len: 1257 Check: 3401 Weight: 1.00 Name: ENSP00000343204/1-1154 Len: 1257 Check: 4005 Weight: 1.00 Name: ENSBTAP00000004101/1-1158 Len: 1257 Check: 9319 Weight: 1.00 Name: bmy_08826T0/1-1233 Len: 1257 Check: 6230 Weight: 1.00 Name: BACU000192/1-1109 Len: 1257 Check: 8790 Weight: 1.00 // 1 50 ENSTTRP00000009221/1-1154 ---------- ---------- ---------- ---------- ---------- ENSP00000343204/1-1154 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000004101/1-1158 ---------- ---------- ---------- ---------- ---------- bmy_08826T0/1-1233 MPLCVFAVLV LDCHYGAGTI ASFKAFTILS SEWVLESREE NPVCFLGGIG BACU000192/1-1109 ---------- ---------- ---------- ---------- ---------- 51 100 ENSTTRP00000009221/1-1154 ---------- ---------- ---MQYLNIK EDCNAMAFCA KMRSSKKTDV ENSP00000343204/1-1154 ---------- ---------- ---MQYLNIK EDCNAMAFCA KMRSSKKTEV ENSBTAP00000004101/1-1158 ---------- ---------- ---LQYLNIK EDCSAMAFCA KMRSSKKAEM bmy_08826T0/1-1233 QLDKCSSVAE VGSLILVALP IEGAQYLNIK EDCNAMAFCA KMRSSKKTDV BACU000192/1-1109 ---------- ---------- ---------- ---------- ---------- 101 150 ENSTTRP00000009221/1-1154 NLEAPEPGVE VLFYLSDREP LRLGGGEYTA EELCIRAAQE CCISPLCHNL ENSP00000343204/1-1154 NLEAPEPGVE VIFYLSDREP LRLGSGEYTA EELCIRAAQA CRISPLCHNL ENSBTAP00000004101/1-1158 NLEAPEPGVE VLFYLSDREP LRLGGGEYTA EELCIRAAQE CCISPLCHNL bmy_08826T0/1-1233 NLEAPEPGVE VLFYLSDREP LRLGGGEYTA EELCIRAAQE CCISPLCHNL BACU000192/1-1109 ---------- ---------- ---------- ---------- --ISPLCHNL 151 200 ENSTTRP00000009221/1-1154 FALYDENTKL WYAPNRTITV DDKMSLRLHY RMRFYFTNWH GTNDNEQSVW ENSP00000343204/1-1154 FALYDENTKL WYAPNRTITV DDKMSLRLHY RMRFYFTNWH GTNDNEQSVW ENSBTAP00000004101/1-1158 FALYDENTKL WYAPNRTVTV DDKTSLRLHY RMRFYFTNWH GTNDNEQSVW bmy_08826T0/1-1233 FALYDENTKL WYAPNRTITV DNKMSLRLHY RMRFYFTNWH GTNDNEQSVW BACU000192/1-1109 FALYDENTKL WYAPNRTITV DDKMSLRLHY RMRFYFTNWH GTNDNEQSVW 201 250 ENSTTRP00000009221/1-1154 RHSPKKQKNS YEKKKVPDAT PLLDASSLEY LFAQGQYDLV KCLAPIRDPK ENSP00000343204/1-1154 RHSPKKQKNG YEKKKIPDAT PLLDASSLEY LFAQGQYDLV KCLAPIRDPK ENSBTAP00000004101/1-1158 RHSPKKQKNG YEKKKVPDAT PLLDASSLEY LFAQGQYDLV KCLAPIRDPK bmy_08826T0/1-1233 RHSPKKQKNS YEKKKVPDAT PLLDASSLEY LFAQGQYDLV KCLAPIRDPK BACU000192/1-1109 RHSPKKQKNS YEKKKVPDAT PLLDASSLEY LFAQGQYDLV KCLAPIRDPK 251 300 ENSTTRP00000009221/1-1154 TEQDGHDIEN ECLGMAVLAI SHYAMMKKMQ LPELPKDISY KRYIPETLNK ENSP00000343204/1-1154 TEQDGHDIEN ECLGMAVLAI SHYAMMKKMQ LPELPKDISY KRYIPETLNK ENSBTAP00000004101/1-1158 TEQDGHDIEN ECLGMAVLAI SHYAMMKKMQ LPELPKDISY KRYIPETLNK bmy_08826T0/1-1233 TEQDGHDIEN ECLGMAVLAI SHYAMMKKMQ LPELPKDISY KRYIPETLNK BACU000192/1-1109 TEQDGHDIEN ECLGMAVLAI SHYAMMKKMQ LPELPKDISF KRYIPETLNK 301 350 ENSTTRP00000009221/1-1154 SIRQRNLLTR MRINNVFKDF LKEFNNKTIC DSSVSTHDVK VKYLATLETL ENSP00000343204/1-1154 SIRQRNLLTR MRINNVFKDF LKEFNNKTIC DSSVSTHDLK VKYLATLETL ENSBTAP00000004101/1-1158 SIRQRNLLTR MRINNVFKDF LKEFNNKTIC DSSVSTHDLK VKYLATLETL bmy_08826T0/1-1233 SIRQRNLLTR MRINNVFKDF LKEFNNKTIC DSSVSTHDLK VKYLATLETL BACU000192/1-1109 SIRQRNLLTR MRINNVFKDF LKEFNNKTIC DSSVSTHDLK VKYLATLETL 351 400 ENSTTRP00000009221/1-1154 TKHYGAEIFE TSMLLISSEN EMNRFHPNDN GNILCYEVMV TGNLGIQWRQ ENSP00000343204/1-1154 TKHYGAEIFE TSMLLISSEN EMNWFHSNDG GNVLYYEVMV TGNLGIQWRH ENSBTAP00000004101/1-1158 TKHYGAEIFE TSMLLISSEN EMNRFHPNDS GNVLCYEVMV TGNLGIQWRQ bmy_08826T0/1-1233 TKHYGAEIFE TSMLLISSEN EMNRFHPNDN GNILCYEVMV TGNLGIQWRQ BACU000192/1-1109 TKHYGAEIFE TSMLLISSEN EMNRFHPNDN GNILCYEVMV TGNLGIQWRQ 401 450 ENSTTRP00000009221/1-1154 KPNXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSP00000343204/1-1154 KPNVVSVEKE KNKLKRKKLE NKHKKDEEKN KIREEWNNFS YFPEITHIVI ENSBTAP00000004101/1-1158 KPHIVPVEKE KNKLKRKKLE NKHKKDEEKN KIREEWNNFS YFPEITHIVI bmy_08826T0/1-1233 KPNIVPVEKE KNKLKRKKLE NKHKKDEEKN KIREEWNNFS YFPEITHIVI BACU000192/1-1109 KPNVVPVEKE KNKLKRKKLE NKHKKDEEKN KIREEWNNFS YFPEITHIVI 451 500 ENSTTRP00000009221/1-1154 XXXXXXXXXX XXXXXELKLS SHEEALSFVS LVDGYFRLTA DAHHYLCTDV ENSP00000343204/1-1154 KESVVSINKQ DNKKMELKLS SHEEALSFVS LVDGYFRLTA DAHHYLCTDV ENSBTAP00000004101/1-1158 KESVVSINKQ DNKKMELKLS SHEEALSFVS LVDGYFRLTA DAHHYLCTDV bmy_08826T0/1-1233 KESAVSINKQ DNKKMELKLS SHEEALSFVS LVDGYFRLTA DAHHYLCTDV BACU000192/1-1109 KESAVSINKQ DNKKMELKLS SHEEALSFVS LVDGYFRLTA DAHHYLCTDV 501 550 ENSTTRP00000009221/1-1154 APPLIVHNIQ NGCHGPICTE YAINKLRQEG SEEGMYVLRW SCTDFDNILM ENSP00000343204/1-1154 APPLIVHNIQ NGCHGPICTE YAINKLRQEG SEEGMYVLRW SCTDFDNILM ENSBTAP00000004101/1-1158 APPLIVHNIQ NGCHGPICTE YAINKLRQEG SEEGMYVLRW SCTDFDNILM bmy_08826T0/1-1233 APPLIVHNIQ NGCHGPICTE YAINKLRQEG SEEGMYVLRW SCTDFDNILM BACU000192/1-1109 APPLIVHNIQ NGCHGPICTE YAINKLRQEG SEEGMYVLRW SCTDFDNILM 551 600 ENSTTRP00000009221/1-1154 TVTCFEKSEQ LLGVQKQFKN FQIEVQKGRY SLHGSDRSFP SLGDLMSHLK ENSP00000343204/1-1154 TVTCFEKSEQ VQGAQKQFKN FQIEVQKGRY SLHGSDRSFP SLGDLMSHLK ENSBTAP00000004101/1-1158 TVTCFEKSE- VLGIQKQFKN FQIEVQKGRY SLHGSDRSFP SLGDLMSHLK bmy_08826T0/1-1233 TVTCFEKSE- LLGVQKQFKN FQIEVQKGRY SLHGSDRSFP SLGDLMSHLK BACU000192/1-1109 TVTCFEKSE- LLGVQKQFKN FQIEVQKGRY SLHGSDRSFP SLGDLMSHLK 601 650 ENSTTRP00000009221/1-1154 KQILRTDNIS FVLKRCCLPK PREISNLLVA TKKAQEWQPV LPVSQLSFYR ENSP00000343204/1-1154 KQILRTDNIS FMLKRCCQPK PREISNLLVA TKKAQEWQPV YPMSQLSFDR ENSBTAP00000004101/1-1158 KQILRTDNIS FVLKRCCQPK PREISNLLVA TKKAQEWQPV YTMSQLSFDR bmy_08826T0/1-1233 KQILRTDNIS FVLKRCCQPK PREISNLLVA TKKAQEWQPV YPMSQLSFDR BACU000192/1-1109 KQILRTDNIS FVLKRCCQPK PREISNLLVA TKKAQEWQPV YPMSQLSFDR 651 700 ENSTTRP00000009221/1-1154 ILKKDIMQGE HLGRGTRTHI YSGTLMDYKD DEGTSEEKRI KVILKVLDPS ENSP00000343204/1-1154 ILKKDLVQGE HLGRGTRTHI YSGTLMDYKD DEGTSEEKKI KVILKVLDPS ENSBTAP00000004101/1-1158 ILKKDITQGE HLGRGTRTHI YSGTLTDYKD DEGTSEEKRI KVILKVLDPS bmy_08826T0/1-1233 ILKKDIMQGE HLGRGTRTHI YSGTLTDYKD DEGTSEEKRI KVILKVLDPS BACU000192/1-1109 ILKKDIMQGE HLGRGTRTHI YSGTLTDYKD DEGTSEEKRI KVILKVLDPS 701 750 ENSTTRP00000009221/1-1154 HRDISL--AF FEAASMMRQV SHKHIVYLYG VCVRDVENIM VEEFVEGGPL ENSP00000343204/1-1154 HRDISL--AF FEAASMMRQV SHKHIVYLYG VCVRDVENIM VEEFVEGGPL ENSBTAP00000004101/1-1158 HRDISL--AF FEAASMMRQV SHKHIVYLYG VCVRDVENIM VEEFVEGGPL bmy_08826T0/1-1233 HRDISLASAF FEAASMMRQV SHKHIVYLYG VCVRDVENIM VEEFVEGGPL BACU000192/1-1109 HRDISLASAF FEAASMMRQV SHKHIVYLYG VCVRDVENIM VEEFVEGGPL 751 800 ENSTTRP00000009221/1-1154 DLFMHRKSDV LTTPWKFKVA KQLASALSYL XXXXXXXXXX XXXXXXXXXX ENSP00000343204/1-1154 DLFMHRKSDV LTTPWKFKVA KQLASALSYL EDKDLVHGNV CTKNLLLARE ENSBTAP00000004101/1-1158 DLFMHRKSDV LTTPWKFKVA KQLASALSYL EDKDLVHGNV CTKNLLLARE bmy_08826T0/1-1233 DLFMHRKSDV LTTPWKFKVA KQLASALSYL EDKDLVHGNV CTKNLLLARE BACU000192/1-1109 DLFMHRKSDV LTTPWKFKVA KQLASALSYL EDKDLVHGNV CTKNLLLARE 801 850 ENSTTRP00000009221/1-1154 XXXXXXXXXX XXXXXXXXXX XXXXXXCIER IPWIAPECVE DSKNLSVAAD ENSP00000343204/1-1154 GIDSECGPFI KLSDPGIPIT VLSRQECIER IPWIAPECVE DSKNLSVAAD ENSBTAP00000004101/1-1158 GIDSECGPFI KLSDPGIPIT VLSRQECIER IPWIAPECVE DSKNLSVAAD bmy_08826T0/1-1233 GTDSECGPFI KLSDPGIPVT VLSRQECIER IPWIAPECVE DSKNLSVAAD BACU000192/1-1109 GTDSECGPFI KLSDPGIPVT VLSRQECIER IPWIAPECVE DSKNLSVAAD 851 900 ENSTTRP00000009221/1-1154 KWSFGTTLWE ICYNGEIPLK DKTLIEKERF YESRCRPVTP SCKELADLMT ENSP00000343204/1-1154 KWSFGTTLWE ICYNGEIPLK DKTLIEKERF YESRCRPVTP SCKELADLMT ENSBTAP00000004101/1-1158 KWSFGTTLWE ICYNGEIPLK DKTLIEKERF YESRCRPVTP SCKELADLMT bmy_08826T0/1-1233 KWSFGTTLWE ICYNGEIPLK DKTLIEKERF YESRCRPVTP SCKELADLMT BACU000192/1-1109 KWSFGTTLWE ICYNGEIPLK DKTLIEKERF YESRCRPVTP SCKELADLMT 901 950 ENSTTRP00000009221/1-1154 RCMNYDPNQR PFFRAIMRDI NKLEEQNPDI VSEKKPATEV DPTHFEKRFL ENSP00000343204/1-1154 RCMNYDPNQR PFFRAIMRDI NKLEEQNPDI VSEKKPATEV DPTHFEKRFL ENSBTAP00000004101/1-1158 RCMNYDPNQR PFFRAIMRDI NKLEEQNPDI VSEKKPTTEV DPTHFEKRFL bmy_08826T0/1-1233 RCMNYDPNQR PFFRAIMRDI NKLEEQNPDI VSEKKPATEV DPTHFEKRFL BACU000192/1-1109 RCMNYDPNQR PFFRAIMRDI NKLEEQNPDI VSEKKPATEV DPTHFEKRFL 951 1000 ENSTTRP00000009221/1-1154 KRIRDLGE-- ---------- ---------- -GHFGKVELC RYDPEGDNTG ENSP00000343204/1-1154 KRIRDLGE-- ---------- ---------- -GHFGKVELC RYDPEGDNTG ENSBTAP00000004101/1-1158 KRIRDLGE-- ---------- ---------- -GHFGKVELC RYDPEGDNTG bmy_08826T0/1-1233 KRIRDLGEAS YTR------- ---------- -GHFGKVELC RYDPEGDNTG BACU000192/1-1109 KRIRDLGEAS YTRLSNRRRD GMEAKWGRRA QGHFGKVELC RYDPEGDNTG 1001 1050 ENSTTRP00000009221/1-1154 EQVAVKSLKP ESGGNHIADL KKEIEILRNL YHENIVKYKG ICTEDGGNGI ENSP00000343204/1-1154 EQVAVKSLKP ESGGNHIADL KKEIEILRNL YHENIVKYKG ICTEDGGNGI ENSBTAP00000004101/1-1158 EQVAVKSLKP ESGGNHIADL KKEIEILRNL YHENIVKYKG ICTEDGGNGI bmy_08826T0/1-1233 EQVAVKSLKP ESGGNHIADL KKEIEILRNL YHENIVKYKG ICTEDGGNGI BACU000192/1-1109 EQVAVKSLKP ESGGNHIADL KKEIEILRNL YHENIVKYKG ICTEDGGNGI 1051 1100 ENSTTRP00000009221/1-1154 KLIMEFLPSG SLKEYLPKNK NKINLKQQLK YAVQICKGMD YLGSRQYVHR ENSP00000343204/1-1154 KLIMEFLPSG SLKEYLPKNK NKINLKQQLK YAVQICKGMD YLGSRQYVHR ENSBTAP00000004101/1-1158 KLIMEFLPSG SLKEYLPKNK NKINLKQQLK YAVQICKGMD YLGSRQYVHR bmy_08826T0/1-1233 KLIMEFLPSG SLKEYLPKNK NKINLKQQLK YAVQICKGMD YLGSRQYVHR BACU000192/1-1109 KLIMEFLPSG SLKEYLPKNK NKINLKQQLK YAVQICKGMD YLGSRQYVHR 1101 1150 ENSTTRP00000009221/1-1154 DLAARNVLVE SEHQVKIGDF GLTKSIETDK EYYTVKDDRD SPVFWYAPEC ENSP00000343204/1-1154 DLAARNVLVE SEHQVKIGDF GLTKAIETDK EYYTVKDDRD SPVFWYAPEC ENSBTAP00000004101/1-1158 DLAARNVLVE SEHQVKIGDF GLTKAIETDK EYYTVKDDRD SPVFWYAPEC bmy_08826T0/1-1233 DLAARNVLVE SEHQVKIGDF GLTKAIETDK EYYTVKDDRD SPVFWYAPEC BACU000192/1-1109 DLAARNVLVE SEHQVKIGDF GLTKAIETDK EYYTVKDDRD SPVFWYAPEC 1151 1200 ENSTTRP00000009221/1-1154 LIQCKFYIAS DVWSFGVTLH ELLTYCDSDS SPMALFLKMI GPTHGQMTVT ENSP00000343204/1-1154 LMQSKFYIAS DVWSFGVTLH ELLTYCDSDS SPMALFLKMI GPTHGQMTVT ENSBTAP00000004101/1-1158 LIQCKFYIAS DVWSFGVTLH ELLTYCDSDS SPMALFLKMI GPTHGQMTVT bmy_08826T0/1-1233 LIQCKFYIAS DVWSFGVTLH ELLTYCDSDS SPMALFLKMI GPTHGQMTVT BACU000192/1-1109 LIQCKFYIAS DVWSFGVTLH ELLTYCDSDS SPMALFLKMI GPTHGQMTVT 1201 1250 ENSTTRP00000009221/1-1154 RLVNTLKEGK RLPCPPNCPE EVYQLMRKCW EFQPSIRTTF QNLIEGFEAL ENSP00000343204/1-1154 RLVNTLKEGK RLPCPPNCPD EVYQLMRKCW EFQPSNRTSF QNLIEGFEAL ENSBTAP00000004101/1-1158 RLVNTLKEGK RLPCPPNCPD EVYQHMRKCW EFQPSNRTTF QNLIEGFEAL bmy_08826T0/1-1233 RLVNTLKEGK RLPCPPNCPE EVYQLMRKCW EFQPSNRTTF QNLIEGFEAL BACU000192/1-1109 RLVNTLKEGK RLPCPPNCPE EVYQLMRKCW EFQPSNRTTF QNLIEGFEAL 1251 1300 ENSTTRP00000009221/1-1154 LK----- ENSP00000343204/1-1154 LK----- ENSBTAP00000004101/1-1158 LRSMSNI bmy_08826T0/1-1233 LK----- BACU000192/1-1109 LK-----