KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 4 Type: P Thu May 15 16:23:05 2014 Check: 00 .. Name: bmy_16432T0/1-676 Len: 881 Check: 252 Weight: 1.00 Name: ENSP00000252998/1-664 Len: 881 Check: 5315 Weight: 1.00 Name: ENSTTRP00000010533/1-630 Len: 881 Check: 1157 Weight: 1.00 Name: ENSBTAP00000004108/1-641 Len: 881 Check: 3285 Weight: 1.00 // 1 50 bmy_16432T0/1-676 MDETGSPGRP RTLSLGRAGI ALARPHFSRQ SQATGEAGGA ARGAPGRAAR ENSP00000252998/1-664 MESFME---- ---------- SLNRLKEIHE KEVLGLQNKL LELNSERC-- ENSTTRP00000010533/1-630 MESFME---- ---------- SLNRLKDVHE NEITGLQNKL LELNSERC-- ENSBTAP00000004108/1-641 MESFTE---- ---------- SLNRLKEVHE NEVMGLQNKL MELNSERC-- 51 100 bmy_16432T0/1-676 APRPVPRRDA QRAGRTGKPR RALRRTSPGS SGINETTAGH LRALSKLHFQ ENSP00000252998/1-664 -------RDA QRIEELFSKN HQLREQ---- ---QKTLKEN LRVL------ ENSTTRP00000010533/1-630 -------RDA QRAEELCAKN RQLREQ---- ---QRALKEN LRAL------ ENSBTAP00000004108/1-641 -------RDA QRVEELCAKN HQLREQ---- ---QKALKEN LRAL------ 101 150 bmy_16432T0/1-676 GSFPKSRAHG TLSPQGRGEA GSHGTQFGKG RARPGRGAVR VPASLLRAAS ENSP00000252998/1-664 ---------- ----ENRLRA G--------- ---------- ---------- ENSTTRP00000010533/1-630 ---------- ----ENRGRD R--------- ---------- ---------- ENSBTAP00000004108/1-641 ---------- ----ENRLRA G--------- ---------- ---------- 151 200 bmy_16432T0/1-676 RLLDPAGCGP ACATAAWSPR SWRGRSSRSS RAPCSRACSM SSSSVSPPLG ENSP00000252998/1-664 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000010533/1-630 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000004108/1-641 ---------- ---------- ---------- ---------- ---------- 201 250 bmy_16432T0/1-676 VPPVGAGDPP RACSARPGVL GKGEEAVWAA PSSLLISAFC SDRADPAAGG ENSP00000252998/1-664 ---------- ---------- ---------- --------LC ---------- ENSTTRP00000010533/1-630 ---------- ---------- ---------- --------LC ---------- ENSBTAP00000004108/1-641 ---------- ---------- ---------- --------LC ---------- 251 300 bmy_16432T0/1-676 KRCLEGGGEA SPGPRVSQRR HQGPATLTPH TSATAGAQHI HGPGHAVQRG ENSP00000252998/1-664 DRCM------ -VTQELARKR QQ-----EFE SSHLQNLQRI F--------- ENSTTRP00000010533/1-630 DRCM------ -LSQELARKK QQ-----EFE NSLLQSLQHV F--------- ENSBTAP00000004108/1-641 DRCM------ -VTQELARKK QQ-----EFE SSLLQNLQHV F--------- 301 350 bmy_16432T0/1-676 GAPAGQLPGA DATSPRLQAQ VLEAELGPST RGSSDTWAPQ GHQPKPQPRE ENSP00000252998/1-664 ------ILTN EMNGLKEENE TLKEEV-KRL RGL------- GDRPKPRAKE ENSTTRP00000010533/1-630 ------LLTT ELTRLQEEND ALKEEV-KQL RGP------- GDRAKPQFRE ENSBTAP00000004108/1-641 ------LLTT ELTRLQEEND ALKEEV-KRL QGP------- GHRPKPQLRE 351 400 bmy_16432T0/1-676 GAPDPPSPLL LPSLGTRKAI TEKPLGGREE MEDHHA---- ---ERPVGYG ENSP00000252998/1-664 GTSDPPSPLL LPSPGGWKAI TEKPPGGHEE AEEDHQGVGL RGEEKPAGHR ENSTTRP00000010533/1-630 GAPGPLSPLL FPSLGTRKAV TEKPLEGHEE VEDGHAGAGP RGGERPVGYG ENSBTAP00000004108/1-641 GISDPPSPLL LPSLGARKAV TEKPLGGHEE TEDGRAGAGP WERERPGVYG 401 450 bmy_16432T0/1-676 TSPVAKISPG ASLPEPRAPD M--------- ---------- ---------- ENSP00000252998/1-664 TSPVAKISPG ATLPESRAPD MSPQRISNQL HGTIAVVRPG SQACPADRGP ENSTTRP00000010533/1-630 TSPVAKISPG ANLPEPRAPD MSPQHISNQL HGTIAVVRPG SWACSANRGS ENSBTAP00000004108/1-641 TSPMAKISPS PNLHEARTPD MNPQRISNQL HGTIAVVRPG SRACSADQGS 451 500 bmy_16432T0/1-676 ---------- ---------- ---------- -------PCE SPKRSLQADR ENSP00000252998/1-664 ANGTPPPLPA RSSPPSPAYE RGLSLDSFLR ASRPSAMTHE APKLSPKVDR ENSTTRP00000010533/1-630 VNGTSPLPPP RSSPPSPSGE HGLPLDSFLQ ASLPSAKPCE SPKSSLQADR ENSBTAP00000004108/1-641 TNGTPPLLPT RNSPPSPPGE HSLPLDSFLQ ASRPSARTCE SLKHSLQADR 501 550 bmy_16432T0/1-676 LCHLNRHLAL PRGSPHRGPQ APATAPSGPQ PQGLKAREVE AWEEPAGLLG ENSP00000252998/1-664 LCLLNRPLSL HLQSPHSSPL APAAAPSDPR LQDLKAREAE AWEEPTELLG ENSTTRP00000010533/1-630 LCHLNRHLAL PRGSPH---- ------SGPA P-GLKAGEAE AWEEPVGLLG ENSBTAP00000004108/1-641 LCLLNRHLTL HLGSPP---- APATAPSGPQ SQGLKAGEAE AWEEPSGLLG 551 600 bmy_16432T0/1-676 LPGALAGVRD PRLEGALHLL LA-QQLWARG RAGGAGLRGP PVPGKTPPSP ENSP00000252998/1-664 LPSALAGMQD LRLEGALHLL LAQQQLRARA RAGSVRPRGQ PTPGEMLPSL ENSTTRP00000010533/1-630 LPGALAGVRD PRLEGALHLL LA-QQLWARG RAGGAGLRGP PVPGKAPPSP ENSBTAP00000004108/1-641 LPGALVGVRN PRLEGALHML LA-QQLRAQG RVGSARLRGP WGPRGTPPSP 601 650 bmy_16432T0/1-676 PAGSHSEGPG GGAAGAA--- --LPRGQHPQ PAGPGSPGAK EATATQDYVP ENSP00000252998/1-664 PVGSDSEGPE NEGTRAALAA AGLSGGRHTQ PAGPGRAQRT EAAATQDCAL ENSTTRP00000010533/1-630 PAGPHSEGPG GGAAWAA--- --LPRGQHPR PAGPGSPRAK EASVTQDYVP ENSBTAP00000004108/1-641 PADSDSEGPE GEAARET--- --LSRRRHPQ PAGPGSPQGK EGTATQDYVP 651 700 bmy_16432T0/1-676 DKPLDLSEWG RGRE-GAPKP ASLPGSLSPP GAHTPSPKPP QGVEPSAQSG ENSP00000252998/1-664 DKPLDLSEWG RARGQDTPKP AGQHGSLSPA AAHTASPEPP TQSGP-LTRS ENSTTRP00000010533/1-630 DKPLDLSEWG RGPG-GAPK- ASPPGSLSPP GAHTPSPKPP REWSP--LHS ENSBTAP00000004108/1-641 DKPLDLSERG RCRA-STPKP ANQSGSLSPP QVPTPSPEPP QGVGPPAQCG 701 750 bmy_16432T0/1-676 VQGLSDGTKG AKEPEVEEPP PSTVRDQAL- ----LLAS-- ---------- ENSP00000252998/1-664 PQALSNGTKG TRVPEQEEAS TPMDPSRPLP GSQLSLSSPG STEDEDTGRP ENSTTRP00000010533/1-630 LRGLGDCTKG AEEAEAEEPP PSTEPSHSLP GP--SLPSPS GPGHEDRGR- ENSBTAP00000004108/1-641 AQRLSNGTQE AKEPEAEEHP SSPDPPYSAP GPHLSLPSPS GPGEEDRGR- 751 800 bmy_16432T0/1-676 -----TRPTQ STQRP----- ---------- ---------- ---------- ENSP00000252998/1-664 LPPPHPQPPP HPQPPDLDGH PEPSKAEVLR PESDELDETD TPGSEVGLSS ENSTTRP00000010533/1-630 -----PKLPP CPQRPDGDSH PELSKAQGQQ LESDELDKPD TSDSEVGLST ENSBTAP00000004108/1-641 -----PRLPP YPPRPGGDSH PELSKVHGQQ LESDELDEPD TSDSEMVLST 801 850 bmy_16432T0/1-676 ---------- ---------- ---------- ---------- ---------- ENSP00000252998/1-664 QAEATTSTTG EGPECICTQE HGQGPPRKRK RASEPGDKAS KKPSRGRRKL ENSTTRP00000010533/1-630 EAGATQSLPA EGPRGFCA-E HGRG-PQKRK RASDQWSKAS KKPSGIRPR- ENSBTAP00000004108/1-641 RAEATESSPG EGPGCVCDKE CGRG-PQKRK RASDSWSKGR PQGEG----- 851 900 bmy_16432T0/1-676 ------WAAL LPLFHQPAA- ---------- - ENSP00000252998/1-664 TATEGPGSPR DAEDHSPSP- --NSSPWEET - ENSTTRP00000010533/1-630 ----GARSPR DPKDGSPSP- --STSSWEES Q ENSBTAP00000004108/1-641 ----ASWATN SPRPGGPRPF PSHSPTWEGS -