KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:23:06 2014 Check: 00 .. Name: bmy_11306T0/1-500 Len: 897 Check: 7817 Weight: 1.00 Name: ENSBTAP00000004111/1-890 Len: 897 Check: 2780 Weight: 1.00 Name: ENSP00000301178/1-894 Len: 897 Check: 1350 Weight: 1.00 Name: BACU001433/1-887 Len: 897 Check: 251 Weight: 1.00 Name: ENSTTRP00000006689/1-870 Len: 897 Check: 8518 Weight: 1.00 // 1 50 bmy_11306T0/1-500 ---------- ---------- ---------- ---------- -MDWDGGAGS ENSBTAP00000004111/1-890 -------MGK VLLAWCWALC CWGRVAPKGP QTEVSPFVGS PGNITGARGL ENSP00000301178/1-894 MAWRCPRMGR VPLAWCLALC GWACMAPRGT QAEESPFVGN PGNITGARGL BACU001433/1-887 -------MGR VLPAWCWVLC CWGCVAPKGP QAAGHPFVGS PGNITGARGL ENSTTRP00000006689/1-870 ---------- ---------- ----VAPKGP QAEGHPFVGS PGNITGARGL 51 100 bmy_11306T0/1-500 GETVR----- ---------- ---------- ---------- ------RLVQ ENSBTAP00000004111/1-890 MGTLRCELQV QGEPPEVTWL RDGQVLELAD STQTQVPLGE DGQDDWKVVS ENSP00000301178/1-894 TGTLRCQLQV QGEPPEVHWL RDGQILELAD STQTQVPLGE DEQDDWIVVS BACU001433/1-887 MGALRCELQV QGEPPEVTWL RDGQVLELAD STQTQVPLGE DGQDDWKVVS ENSTTRP00000006689/1-870 MGALRCELQV QGEPPEVTWL RDGQVLELAD STQTQVPLGE DGQDDWKVVS 101 150 bmy_11306T0/1-500 EERLPRIRMR ARLW------ ---------- ---GVNG--- ---------- ENSBTAP00000004111/1-890 QLRISSLQLS DAGWYQCTVV LGEKTFVSQP GYVGLEGLPY FLEEPEDRTV ENSP00000301178/1-894 QLRITSLQLS DTGQYQCLVF LGHQTFVSQP GYVGLEGLPY FLEEPEDRTV BACU001433/1-887 QLRISSLQLS DAGWYQCAVV LGRKTFVSQP GYVGLEGLPY FLEEPEDRTV ENSTTRP00000006689/1-870 QLRISSLQLS DAGWYQCAVV LGRKTFVSQP GYVGLEGLPY FLEEPEDRTV 151 200 bmy_11306T0/1-500 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000004111/1-890 VANTPFNLSC RAQGPPEPVD LLWLQDAVSL ASAMDHSPQH TLRVPGLNKT ENSP00000301178/1-894 AANTPFNLSC QAQGPPEPVD LLWLQDAVPL ATAPGHGPQR SLHVPGLNKT BACU001433/1-887 AANTPFNLSC QAQGPPEPVD LLWLQDAVSL AATVDHSAQH ILRVPGLNKT ENSTTRP00000006689/1-870 AANTPFNLSC RAQGPPEPVD LLWLQDAVSL AATVDHSAQH TLRVPGLNKT 201 250 bmy_11306T0/1-500 ---------- ---------- ------RQK- ---------- ---------- ENSBTAP00000004111/1-890 ASFSCEAHNA KGITTSRTAT ITVLPQRPHD LHLVSTQPTE LEVAWTPGLS ENSP00000301178/1-894 SSFSCEAHNA KGVTTSRTAT ITVLPQQPRN LHLVSRQPTE LEVAWTPGLS BACU001433/1-887 ASFSCEAHNA KGVTTSRTAT ITVLPQRPRD LHLVSSQPTE LEVAWTPGLS ENSTTRP00000006689/1-870 ASFSCEAHNA KGVTTSRTAT ITVLPQRPHD LHLVSSQPTE LEVAWTPCLS 251 300 bmy_11306T0/1-500 -------VAV QDLLSK---- ---------- ---------- ---------- ENSBTAP00000004111/1-890 GIYPLTHCIL QAVLSDDRVG AWLGEPDPPE EPLTLQASVP PHQLRLGSLH ENSP00000301178/1-894 GIYPLTHCTL QAVLSNDGMG IQAGEPDPPE EPLTSQASVP PHQLRLGSLH BACU001433/1-887 GIYPLTHCTL QAVLSDDGVG TWLGEPDPPE EPLTLQASVP PHQLRLGKLH ENSTTRP00000006689/1-870 GIYPLTHCTL QAVLSDDGVG TWLGEPDPPE EPLTLQASVP PHQLRLGNLH 301 350 bmy_11306T0/1-500 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000004111/1-890 PHTPYHLRVA CVSSQGPSPW THWLPVETPE GVPLGPPENV SAMRNGSQAL ENSP00000301178/1-894 PHTPYHIRVA CTSSQGPSSW THWLPVETPE GVPLGPPENI SATRNGSQAF BACU001433/1-887 PHTPYHIRVA CVSSQGPSPW THWLPVETPE GVPLGPPENV SAMRNGSQAL ENSTTRP00000006689/1-870 PHTPYHIRVA CVSSQGPSPW THWLPVETPE GVPLGPPENV SAMRNGSQAL 351 400 bmy_11306T0/1-500 -HWRRGQA-- -GLGVGMALA F--------- -TVGGRRGFH M--------- ENSBTAP00000004111/1-890 VRWQEPRAPM QGTLLGYRLA YRGQDTPEAL KDFQYTRSHI LQLSFPPPTS ENSP00000301178/1-894 VHWQEPRAPL QGTLLGYRLA YQGQDTPEVL MDIGLRQEVT LELQGDGSVS BACU001433/1-887 VHWQEPRAPL QGTLLGYRLA YRGQDTPEVL MDVGLRREVT LELRGDGSVP ENSTTRP00000006689/1-870 VHWQEPRAPL QGTLLGYRLA YRGQDTPEVL MDVGLRREVT LELRGDRSVP 401 450 bmy_11306T0/1-500 ---------- --------VL PCP------- --------HL PSIPP----- ENSBTAP00000004111/1-890 TPFMSIACPV QPCPSPNEPT PASLQHHPPG DPRNQDLHHD LSEPPAPAFS ENSP00000301178/1-894 NLTVCVAAYT AAGDGPW-SL PVPLEAWRPG --QAQPVHQL VKEPSTPAFS BACU001433/1-887 NLTVCVAAYT AAGDGPW-SL PVPLVLWRPG --QGQPIHQL VSEPPVPAFS ENSTTRP00000006689/1-870 NLTVCVAAYT AAGDGPW-SL PVPLVLWRPG --QGQPIHQL VSEPPVPAFS 451 500 bmy_11306T0/1-500 ---------- ---------- ---------- ----REVFEP TMERGELVVR ENSBTAP00000004111/1-890 WPWWYVLLGA VVAAACVLIL ALFLFHRRKK ETRYGEVFEP TVERGELVVR ENSP00000301178/1-894 WPWWYVLLGA VVAAACVLIL ALFLVHRRKK ETRYGEVFEP TVERGELVVR BACU001433/1-887 WPWWYVLLGA VVAAACVLIL ALFLVHRRKK ETRYGEVFEP TMERGELVVR ENSTTRP00000006689/1-870 WPWWYVLLGA VVAAACVLIL ALFLVHRRKK ETRYGEVFEP TMERGELVVR 501 550 bmy_11306T0/1-500 YRVRKSYSRR TTEATLNSLG ISEELKEKLR DVMVDRHKVA LGKTLGEGEF ENSBTAP00000004111/1-890 YRVRKSYSRR TTEATLNSLG ISEELKEKLR DVMVDRHKVA LGKTLGEGEF ENSP00000301178/1-894 YRVRKSYSRR TTEATLNSLG ISEELKEKLR DVMVDRHKVA LGKTLGEGEF BACU001433/1-887 YRVRKSYSRR TTEATLNSLG ISEELKEKLR DVMVDRHKVA LGKTLGEGEF ENSTTRP00000006689/1-870 YRVRKSYSRR TTEATLNSLG ISEELKEKLR DVMVDRHKVA LGKTLGEGEF 551 600 bmy_11306T0/1-500 GAVMEGQLNQ DDSILKVAVK TMKIAICTRS ELEDFLSEAV CMKEFDHPNV ENSBTAP00000004111/1-890 GAVMEGQLNQ DDSVLKVAVK TMKIAICTRS ELEDFLSEAV CMKEFDHPNV ENSP00000301178/1-894 GAVMEGQLNQ DDSILKVAVK TMKIAICTRS ELEDFLSEAV CMKEFDHPNV BACU001433/1-887 GAVMEGQLNQ DDSILKVAVK TMKIAICTRS ELEDFLSEAV CMKEFDHPNV ENSTTRP00000006689/1-870 GAVMEGQLNQ DDSILKVAVK TMKXXXXXXX XXXXXXXXXX XXXXXXXXXX 601 650 bmy_11306T0/1-500 MRLIGVCFQG SEREGFPAPV VILPFMKHGD LHSFLLYSRL GDQPVFLPTQ ENSBTAP00000004111/1-890 MRLIGVCFQG SEREGFPAPV VILPFMKHGD LHSFLLYSRL GDQPVFLPTQ ENSP00000301178/1-894 MRLIGVCFQG SERESFPAPV VILPFMKHGD LHSFLLYSRL GDQPVYLPTQ BACU001433/1-887 MRLIGVCFQG SEREGFPAPV VILPFMKHGD LHSFLLYSRL GDQPVFLPTQ ENSTTRP00000006689/1-870 XRLIGVCFQG SEREGFPAPV VILPFMKHGD LHSFLLYSRL GDQPVILPTQ 651 700 bmy_11306T0/1-500 MLVKFMADIA SGMEYLSTKR FIHRDLAARN CMLNENMSVC VADFGLSKKI ENSBTAP00000004111/1-890 MLVKFMADIA SGMEYLSTKR FIHRDLAARN CMLNENMSVC VADFGLSKKI ENSP00000301178/1-894 MLVKFMADIA SGMEYLSTKR FIHRDLAARN CMLNENMSVC VADFGLSKKI BACU001433/1-887 MLVKFMADIA SGMEYLSTKR FIHRDLAARN CMLNENMSVC VADFGLSKKI ENSTTRP00000006689/1-870 MLVKFMADIA SGMEYLSTKR FIHRDLAARN CMLNENMSVC VADFGLSKKI 701 750 bmy_11306T0/1-500 YNGDYYRQGR IAKMPVKWIA IESLADRVYT SKSDVWSFGV TMWEIATRGQ ENSBTAP00000004111/1-890 YNGDYYRQGR IAKMPVKWIA IESLADRVYT SKSDVWSFGV TMWEIATRGQ ENSP00000301178/1-894 YNGDYYRQGR IAKMPVKWIA IESLADRVYT SKSDVWSFGV TMWEIATRGQ BACU001433/1-887 YNGDYYRQGR IAKMPVKWIA IESLADRVYT SKSDVWSFGV TMWEIATRGQ ENSTTRP00000006689/1-870 YNGDYYRQGR IAKMPVKWIA IESLADRVYT SKSDVWSFGV TMWEIATRGQ 751 800 bmy_11306T0/1-500 TPYPGVENSE IYDYLRQGNR LKQPVDCLDG LYALMSQCWE LNPRDRPSFA ENSBTAP00000004111/1-890 TPYPGVENSE IYDYLRQGNR LKQPVDCLDG LYALMSRCWE LNPRDRPSFA ENSP00000301178/1-894 TPYPGVENSE IYDYLRQGNR LKQPADCLDG LYALMSRCWE LNPQDRPSFT BACU001433/1-887 TPYPGVENSE IYDYLRQGNR LKQPVDCLDG LYALMSQCWE LNPRDRPSFA ENSTTRP00000006689/1-870 TPYPGVENSE IYDYLRQGNR LKQPVDCLDG LYALMSRCWE LNPRDRPSFA 801 850 bmy_11306T0/1-500 ELREDLENTL KALPPAQEPD EILYVNMDEG GGHPEPLGAA GGADPLTQPD ENSBTAP00000004111/1-890 ELREDLENTL KALPPAQEPD EILYVNMDEG GGHSEPLGAA GGADPPAQPD ENSP00000301178/1-894 ELREDLENTL KALPPAQEPD EILYVNMDEG GGYPEPPGAA GGADPPTQPD BACU001433/1-887 ELREDLENTL KALPPAQEPD EILYVNMDEG GGHPEPLGAA GGADPLTQPD ENSTTRP00000006689/1-870 ELREDLENTL KALPPAQEPD EILYVNMDEG GGHPEPLGAA GGAEPPTQPD 851 900 bmy_11306T0/1-500 PKDSCSCLTA AEVHPAGRYV LCPSTAPGPA LPADRSSPAP PGQEDGA ENSBTAP00000004111/1-890 PKDSCSCLTA AEVHPAGRYV LCPSTAPGPI LPAERSSPAP PGQEDGA ENSP00000301178/1-894 PKDSCSCLTA AEVHPAGRYV LCPSTTPSPA QPADRGSPAA PGQEDGA BACU001433/1-887 PKDSCSCLTA AEVHPAGRYV LCPSTAPGPA LPADRSSPAP PGQEDGA ENSTTRP00000006689/1-870 PKDSCSCLTA AEVHPAGRYV LCPSTAPGPA LPADRSSPAP PGQEDGA