KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:23:10 2014 Check: 00 .. Name: bmy_06050T0/1-276 Len: 321 Check: 4989 Weight: 1.00 Name: ENSP00000306328/1-321 Len: 321 Check: 7719 Weight: 1.00 Name: ENSBTAP00000004127/1-321 Len: 321 Check: 9128 Weight: 1.00 Name: BACU012779/1-258 Len: 321 Check: 5358 Weight: 1.00 Name: ENSTTRP00000001568/1-314 Len: 321 Check: 1288 Weight: 1.00 // 1 50 bmy_06050T0/1-276 MATGSQQKEN TLLHLFAGGP ---------- ---------- ---------- ENSP00000306328/1-321 MATGGQQKEN TLLHLFAGGC GGTVGAIFTC PLEVIKTRLQ SSRLALRTVY ENSBTAP00000004127/1-321 MATGTQQKEN TLLHLFAGGC GGTVGAIFTC PLEVIKTRLQ SSRLALRTVY BACU012779/1-258 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000001568/1-314 -------KEN TLLHLFAGGC GGTVGAIFTC PLEVIKTRLQ SSRLALRTVY 51 100 bmy_06050T0/1-276 ---------- ---CLRILKI H--LFSLFRS ILEKEGPKSL FRGLGPNLVG ENSP00000306328/1-321 YPQVHLGTIS GAGMVRPTSV TPGLFQVLKS ILEKEGPKSL FRGLGPNLVG ENSBTAP00000004127/1-321 YPQVHLGTIS GAGVVRQTSV TPGLLQVLKS ILEKEGPRSL FRGLGPNLVG BACU012779/1-258 ---------- ---MVRPTSV TPGLLQVLKS ILEKEGPKSL FRGLGPNLVG ENSTTRP00000001568/1-314 YPQVHLGTIS GAGMVRPTSV TPGLLQVLKS ILEKEGPKSL FRGLGPNLVG 101 150 bmy_06050T0/1-276 VAPSRAVYFA CYSKAKEQFN GIFVPNSNTV HIFSAGSAAF VTNSLMNPIW ENSP00000306328/1-321 VAPSRAVYFA CYSKAKEQFN GIFVPNSNIV HIFSAGSAAF ITNSLMNPIW ENSBTAP00000004127/1-321 VAPSRAVYFA CYSKAKEQFN GVFVPNSNIV HVFSAGSAAF VTNSLMNPIW BACU012779/1-258 VAPSRAVYFA CYSKAKEQFN GIFVPNSNTV HIFSAGSAAF VTNSLMNPIW ENSTTRP00000001568/1-314 VAPSRAVYFA CYSKAKEQFN GIFVPNSNTV HIFSAGSAAF VTNSLMNPIW 151 200 bmy_06050T0/1-276 MVKTRMQLER KVRGSKQMNT LQCARYVYQT EGIRGFYRGL TASYAGISET ENSP00000306328/1-321 MVKTRMQLEQ KVRGSKQMNT LQCARYVYQT EGIRGFYRGL TASYAGISET ENSBTAP00000004127/1-321 MVKTRMQLER KVRGSKQMNT LQCARYVYQT EGIRGFYRGL TASYAGISET BACU012779/1-258 MVKTRMQLER KVRGSKQMNT LQCARYVYQT EGIRGFYRGL TASCAGISET ENSTTRP00000001568/1-314 MVKTRMQLER KVRGSKQMNT LQCARYVYQT EGIRGFYRGL TASYAGISET 201 250 bmy_06050T0/1-276 IICFAIYESL KKYLKEAPLA SSTNGTEKNS TNFFGLMAAA ALSKGCASCV ENSP00000306328/1-321 IICFAIYESL KKYLKEAPLA SSANGTEKNS TSFFGLMAAA ALSKGCASCI ENSBTAP00000004127/1-321 IICFAIYESL KKYLKEAPLA SSTNGTEKNS TNFFGLMAAA ALSKGCASCV BACU012779/1-258 IICFAIYESL KKYLKEAPLA SSTNGTEKNS TNFFGLMAAA ALSEGCASCV ENSTTRP00000001568/1-314 IICFAIYENL KKYLKEAPLA SSTNGTEKNS TNFFGLMAAA ALSKGCASCV 251 300 bmy_06050T0/1-276 AYPHEVIRTR LREEGTKYKS FVQTARLVFR EEGYLAFYRG LFAQLIRQIP ENSP00000306328/1-321 AYPHEVIRTR LREEGTKYKS FVQTARLVFR EEGYLAFYRG LFAQLIRQIP ENSBTAP00000004127/1-321 AYPHEVIRTR LREEGSKYKS FVQTARLVFR EEGYLAFYRG LFAQLIRQIP BACU012779/1-258 AYPHEVIRTR LREEGTKYKS FVQTARLVFR EEGYLAFYRG LFAQLIRQIP ENSTTRP00000001568/1-314 AYPHEVIRTR LREEGTKYKS FVQTARLVFR EEGYLAFYRG LFAQLIRQIP 301 350 bmy_06050T0/1-276 NTAIVLSTYE LIVYLLEDHA Q ENSP00000306328/1-321 NTAIVLSTYE LIVYLLEDRT Q ENSBTAP00000004127/1-321 NTAIVLSTYE LIVYLLEDHA Q BACU012779/1-258 NTAIVLSTYE LIVYMLEDHA Q ENSTTRP00000001568/1-314 NTAIVLSTYE LIVYLLEDHA Q