KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:23:11 2014 Check: 00 .. Name: ENSP00000344503/1-666 Len: 690 Check: 1457 Weight: 1.00 Name: ENSTTRP00000001569/1-665 Len: 690 Check: 8224 Weight: 1.00 Name: ENSBTAP00000004131/1-669 Len: 690 Check: 718 Weight: 1.00 Name: bmy_06051T0/1-403 Len: 690 Check: 4251 Weight: 1.00 Name: BACU003000/1-605 Len: 690 Check: 1698 Weight: 1.00 // 1 50 ENSP00000344503/1-666 MEGVSALLAR CPTAGLAG-- ---------- -------GLG VT-ACAAAGV ENSTTRP00000001569/1-665 MEGMSALLAR YPTAGLAG-- ---------- -------GLG VT-ACAAAGV ENSBTAP00000004131/1-669 MEGVSALLAR CPTAGLAG-- ---------- -------GLG VT-ACAAAGV bmy_06051T0/1-403 -RPHHDHEPR CPVLLFLGLA LWFSDAEDVR SLVVHSEGLG LNWSCSCLG- BACU003000/1-605 ---------- ---------- ---------- ---------- ---------- 51 100 ENSP00000344503/1-666 LLYRIARRMK PTHTMVNCWF CNQDTLVPYG NRNCWDCPHC EQYNGFQENG ENSTTRP00000001569/1-665 LLYRIARRMK PTHTVVNCWF CNQDTVVPYG NRNCWDCPHC EQYNGFQENG ENSBTAP00000004131/1-669 LLYRIARRMK PTHTVVNCWF CNQDTVVPYG NRNCWDCPHC EQYNGFQENG bmy_06051T0/1-403 --------MK PTHTVVNCWF CNQDTVVPYG NRNCWDCPHC EQYNGFQENG BACU003000/1-605 --------MK PTHTVVNCWF CNQDTVVPYG NRNCWDCPHC EQYNGFQENG 101 150 ENSP00000344503/1-666 DYNKPIPAQY LEHLNHVVSS APSLRDPSQP QQWVSSQVLL CKRCNHHQTT ENSTTRP00000001569/1-665 DYNKPIPAQY LEHLNHVVSG APGPRAPMQP PQWVSSQVLL CRRCSHHQTT ENSBTAP00000004131/1-669 DYNKPIPAQY LEHLNHVVSG SPGPRAPAQP LQWVSSQVLL CRRCSHHQTA bmy_06051T0/1-403 DYNKPIPAQY LEHLNHVVSG APGPRAPMQP PQWVSSQVLL CRRCSHHQTT BACU003000/1-605 DYNKPIPAQY LEHLNHVVSG APGPRAPMQP PQWVSSQVLL CRRCSHHQTT 151 200 ENSP00000344503/1-666 KIKQLAAFAP REEGRYDEEV EVYRHHLEQM YKLCRPCQAA VEYYIKHQNR ENSTTRP00000001569/1-665 KIKQLAAFSP RDEGRYDEEI EVYRHHLEQM YKLCRPCQAA VEHYIKHQNR ENSBTAP00000004131/1-669 KVKQLAAFSP RDEGRYDEEI EVYRHHLEQM YKLCRPCQAA VEHYIKHQNR bmy_06051T0/1-403 KIKQLAAFSP RDEGRYDEEI EVYRHHLEQM YKLCRPCQAA VEHYIKHQNR BACU003000/1-605 KIKQLAAFSP RDEGRYDEEI EVYRHHLEQM YKLCRPCQAA VEHYIKHQNR 201 250 ENSP00000344503/1-666 QLRALLLSHQ FKRREADQTH AQNF-SSAVK SPVQVILLRA LAFLACAFLL ENSTTRP00000001569/1-665 QLRALLLSHQ FKRREADQTH TQSFCSSVVK APLQVIVLRA LAFLACAFLL ENSBTAP00000004131/1-669 QLRALLLSHQ FKRREADQTH TQSFCASAVK APAQVIVLRA LAFLACAFLL bmy_06051T0/1-403 QLRALLLSRQ FKRREADQTH TQSFCSSMVK APLQVIVLRA LAFLACAFLL BACU003000/1-605 QLRALLLSRR FKRREADQTH TQSFCSSAVK APLQVTVLRA LAFLACAFLL 251 300 ENSP00000344503/1-666 TTALYGASGH FAPGTTVPLA LPPGGNGSAT PDNGTTPGAE GWRQLLGLLP ENSTTRP00000001569/1-665 TTALYGTSNP FAPGAP-PRA LPPGSNGSA- PDNSTAPGAX XXXXXXXXXX ENSBTAP00000004131/1-669 TTALYGTSNP FAPGAPLPPT LPTGSNGSAP PDNGTATGAE GWRQLLGLLP bmy_06051T0/1-403 TTALYGTSNP FAPGAPLPPA LPPGSNGSAP PDNGTAPGAE GWRQLLGLLP BACU003000/1-605 ATALCGTSKS FAPGAPLPPA LPPGSNGSAP PDNGTAPGAE GWRQLLGLLP 301 350 ENSP00000344503/1-666 EHMAEKLCEA WAFGQSHQTG VVALGLLTCL LAMLLAGRIR LRRIDAFCTC ENSTTRP00000001569/1-665 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX LRRIDAFSTG ENSBTAP00000004131/1-669 EHAAEKLREA WAFGQSHQMG VVALGLLTCL LAMLLAGRIR LRRIDAFSTG bmy_06051T0/1-403 KHAAEKLHEA WAFGQSHQMG VVGLGLLTCL LAMLLAGRIR LRRIDAFSTG BACU003000/1-605 KHAAEKLHEA WAFGQSHQMG VVGLGLLTCL LAMLLAGRIR LRRIDAFSTG 351 400 ENSP00000344503/1-666 LWALLLGLHL AEQHLQAASP SWLDTLKFST TSLCCLVGFT AAVATRKATG ENSTTRP00000001569/1-665 LWALLLALHL AEQYLQAASP SWLDTLKFST TSLCCLVGFT AAVATRKATG ENSBTAP00000004131/1-669 LWALLLGLHL AEQYLQAASP SWLDTLKFST TSLCCLVGFT AAVATRKATG bmy_06051T0/1-403 LWALLLALHL AEQYLQAASP SWLDTLKFSA TSLCCLVGFT AAVATRKATG BACU003000/1-605 LWALLLALHL AEQYLQAASP SWLDTLKFST TSLCCLVGFT AAVATRKATG 401 450 ENSP00000344503/1-666 PRRFRPRRFF PGDSAGLFPT SPSLAIPHP- -SVGGSPASL FIPSPPSFLP ENSTTRP00000001569/1-665 PRRFRPRRYF PGDSAGLFPA GPSLAVPCR- -GVAGPSPAL FIPAPPGFLP ENSBTAP00000004131/1-669 PRRFRPRRCF PADSVGLFPT SPSLAIPCPS LSITGPSPSL FVPTPPGFLP bmy_06051T0/1-403 PRRFRPRR-- ---------- ---------- ---------- ---------- BACU003000/1-605 PRRFRPRRYF PGDSAGLFPA GPSLAVPCP- -SIAGPSPAL FIPAPPGFLP 451 500 ENSP00000344503/1-666 LANQQLFRSP RRTSPSSLPG RLSRALSLGT IPSLTRADSG YLFSGSRPPS ENSTTRP00000001569/1-665 LANQQLFRSP RRASPSSLPG RLSRALSLGT IPSLTRAXXX YLFSGSRPPS ENSBTAP00000004131/1-669 IANHQLFRSP RRASPSSLPG RLSRALSLGT IPSLTRADSG YLFSGSRPPS bmy_06051T0/1-403 ---------- ---------- ---------- ---------- ---------- BACU003000/1-605 LANQQLFRSP RRASPSSLPG RLSRALSLGT IPSLTRA--- ---------- 501 550 ENSP00000344503/1-666 QVSRSGEFPV SDYFSLLSGS CPSSPLPSPA PSVAGSVASS SGSLRHRRPL ENSTTRP00000001569/1-665 QVSRSREVPV SDYFSLLSGS CPSSPVPSPA PSVAGSVASS SGSLRHRRPL ENSBTAP00000004131/1-669 QVSRPGEVSV SDYFSLLSGS CPSSPVPSPA PSVAGSVASS AGSLRHRRPL bmy_06051T0/1-403 ---------- ---------- ---------- ---------- ---------- BACU003000/1-605 ---------- -DYFSLLSGS CPSSPVPSPA PSVAGSVASS SGSLRHRRPL 551 600 ENSP00000344503/1-666 ISPARLNLKG QKLLLFPSPP GEAPTTPSSS DEHSPHNGSL FTMEPPHVPR ENSTTRP00000001569/1-665 ISPARLNLKG QKLLLFPSPP GEAPNTPSSS DEHSPRNGSL FTIEPPAVPQ ENSBTAP00000004131/1-669 ISPARLNLKG QKLLLFPSPP GDAPHTPSSS DEHSPHNGSL YTIESPPAPQ bmy_06051T0/1-403 ---------- ---------- ---------- ---------- --------SE BACU003000/1-605 ISPARLNLKG QKLLLFPSPP GEAPNTPSSS DEHSPRNGSL FTVEPPPIPQ 601 650 ENSP00000344503/1-666 KPPLQDVKHA LDLRSKLERG SACSNRSIKK EDDSSQSSTC VVDTTTRGCS ENSTTRP00000001569/1-665 RQPARDTKHS VDMKSAPEGG STCSSRSIKK EDDSSRSSSC VVDTTTRGCA ENSBTAP00000004131/1-669 KQPARDTKHT ADTKSVPEGG SSCSSRSIKK EDDSSQSS-C VVDTTTRGCA bmy_06051T0/1-403 KQQ------- ---------- ---------- ---------- ---------- BACU003000/1-605 RQPARDMKHT MDVKSAPERG STCSSRSIKK EDDSSQSSSC VVDTTTRGCA 651 700 ENSP00000344503/1-666 EEAATWR-GR FGPSLVRGLL AVSLAANALF TSVFLYQSLR ENSTTRP00000001569/1-665 EEAPTWR-GR LAPSLIRGLL AVSLTVNALF TSAYLYQSLR ENSBTAP00000004131/1-669 EEPTSWREGR FGPSVIRGLL AVSLTANALF TSAYLYQSLR bmy_06051T0/1-403 ---------- ---------- ---------- ---------- BACU003000/1-605 EEATTWR-GR LGPSLIRGLL AVSLTVNALF TSAYLYQSLR