KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:23:11 2014 Check: 00 .. Name: bmy_07050T0/1-431 Len: 569 Check: 9501 Weight: 1.00 Name: BACU004713/1-564 Len: 569 Check: 1463 Weight: 1.00 Name: ENSP00000358039/1-518 Len: 569 Check: 8120 Weight: 1.00 Name: ENSBTAP00000004132/1-518 Len: 569 Check: 6536 Weight: 1.00 Name: ENSTTRP00000002035/1-488 Len: 569 Check: 6772 Weight: 1.00 // 1 50 bmy_07050T0/1-431 MARAASAPRG SGEGPAVGAQ EARCIVGWRR FWAGPRSVWR VGAMASWAAL BACU004713/1-564 MAPAASAPRG SGEGPAVGAG EARCIVGWRR FGAGPRSVWR VGAMASWAAL ENSP00000358039/1-518 ---------- ---------- ---------- ---------- ---MAFWAGG ENSBTAP00000004132/1-518 ---------- ---------- ---------- ---------- ---MASWAAL ENSTTRP00000002035/1-488 ---------- ---------- ---------- ---------- ---------- 51 100 bmy_07050T0/1-431 SPSIVEYFQG EDFYRCGYCK NESGSRSNGM WAHSMTVQDY QDLIDRGWRR BACU004713/1-564 SPSIVEYFQG EDFYRCGYCK NESGSRSNGM WAHSMTVQDY QDLIDRGWRR ENSP00000358039/1-518 SPSVVDYFPS EDFYRCGYCK NESGSRSNGM WAHSMTVQDY QDLIDRGWRR ENSBTAP00000004132/1-518 SPSIVEYFEG EDFYRCGYCK NESGSRSNGM WAHSMTVQDY QDLIDRGWRR ENSTTRP00000002035/1-488 ---------- ---------- ---------M WAHSMTVQDY QDLIDRGWRR 101 150 bmy_07050T0/1-431 SGKYVYKPVM NQTCCPQYTI RCRPLQFQPS KSHKKVLKKM LKFLAKGEIS BACU004713/1-564 SGKYVYKPVM NQTCCPQYTI RCRPLQFQPS KSHKKVLKKM LKFLAKGEIS ENSP00000358039/1-518 SGKYVYKPVM NQTCCPQYTI RCRPLQFQPS KSHKKVLKKM LKFLAKGEVP ENSBTAP00000004132/1-518 SGKYVYKPVM NQTCCPQYTI RCRPLQFQPS KSHKKVLKKM LKFLAKGEIS ENSTTRP00000002035/1-488 SGKYVYKPVM NQTCCPQYTI RCRPLQFQPS KSHKKVLKKM LKFLAKGEIS 151 200 bmy_07050T0/1-431 KGNCEDEPME ---PTMEDAV ASDFALINKL DIQCDLKTLS DDLGESLKSE BACU004713/1-564 KGNCEDEPME ---PTMEDAV ASDFALINKL DIQCDLKTLS DDLKESLKSE ENSP00000358039/1-518 KGSCEDEPMD ---STMDDAV AGDFALINKL DIQCDLKTLS DDIKESLESE ENSBTAP00000004132/1-518 KGNCEDEPME ---PTVEDAV SSDFGLINKL DIHCDLKTLN DDLKKSLESE ENSTTRP00000002035/1-488 KGNCEDEPME PTMPTMEDAV ASDFALINKL DIQCDLKTLG DDLKESVKSE 201 250 bmy_07050T0/1-431 EKKKGKSSXR EESNELIQSQ D-TEEKLDSG EPSHSVKVHT VPQPGKGADL BACU004713/1-564 EKKKGKSSKR EESNELIQSQ D-TEEKLDSG EPSHSVKVHT VPQPGKGADL ENSP00000358039/1-518 ----GKNSKK EEPQELLQSQ DFVGEKLGSG EPSHSVKVHT VPKPGKGADL ENSBTAP00000004132/1-518 EKKKAK---R EESNEITHSQ D-MEEKLGSG EPSCSVKVHT APQPGRGADL ENSTTRP00000002035/1-488 EKKKGKSSER EESNELIQSQ D-MEEKLDSG EPSHSAKVHT APQPGKGADL 251 300 bmy_07050T0/1-431 SKPPCRKAKE IRKERKRLKL MRQNPGGELE GFQVRCQPPS LFPPKAKSNQ BACU004713/1-564 SKPPCRKAKE IRKERKRLKL MRQNPGGELE GFQVQGQPPS LFPPKAKSNQ ENSP00000358039/1-518 SKPPCRKAKE IRKERKRLKL MQQNPAGELE GFQAQGHPPS LFPPKAKSNQ ENSBTAP00000004132/1-518 SKPPCRKAKE IRKERKRLKL MQQNPAGERE GFQAQCQPSS LLPPKTKSNE ENSTTRP00000002035/1-488 SKPPCRKAKE IRKERKRLKL MQQNPGGELE GFQVRCQPPS LFPPKAKSNQ 301 350 bmy_07050T0/1-431 PKSLEDLIFE SLPESASHKF EVRVVRSSPP SSQFKATFQE SYQVYKRYQM BACU004713/1-564 PKSLEDLIFE SLPESASHKF EVRVVRSSPP SSQFKATFQE SYQVYKRYQM ENSP00000358039/1-518 PKSLEDLIFE SLPENASHKL EVRLVPVSFE DPEFKSSFSQ SFSLYVKYQV ENSBTAP00000004132/1-518 PKSLEDLIFE SLPENASHKL EVRLVPVSFE DPEFKSSFSQ SFSLYVKYQM ENSTTRP00000002035/1-488 PKSLEDLIFE SLPESASHKF EVRLVPVSFE DPEFKSSFSQ SFSLYVKYQM 351 400 bmy_07050T0/1-431 VVHKDPPDKP TVSQVSRPSV RLVPVSFEDP EFKS-----S FSQSF----- BACU004713/1-564 VVHKDPPDKP TVSQFTR-FL CSSPLEAENP ANGPDCGYGS FHQQYWLDGK ENSP00000358039/1-518 AIHQDPPDEC GKTEFTR-FL CSSPLEAETP PNGPDCGYGS FHQQYWLDGK ENSBTAP00000004132/1-518 AIHQDPPDEC GKTEFTR-FL CSSPLETENS PNGPDCGYGS FHQQYWLDGK ENSTTRP00000002035/1-488 AIHQDPPDEC GKTEFTR-FL CSSPLEAENP PYGPDCGYGS FHQQYWLDGK 401 450 bmy_07050T0/1-431 ---------- -----SLYVK YQ-------- ---------- --MAIHQDPP BACU004713/1-564 IIAVGVIDIL PYCVSSVYLY YDPDYSFLSL GVYSALREIA FTRQLHEKTP ENSP00000358039/1-518 IIAVGVIDIL PNCVSSVYLY YDPDYSFLSL GVYSALREIA FTRQLHEKTS ENSBTAP00000004132/1-518 IIAVGVIDIL PYCVSSVYLY YDPDYSFLSL GVYSALREIA FTRQLHEKTP ENSTTRP00000002035/1-488 IIAVGVIDVL PYCVSSVYLY YDPDYSFLSL GVYSALREIA FTRQLHEKTP 451 500 bmy_07050T0/1-431 DE-------- ---CGKTE-- ---------- ------VPFA KCFFPM---- BACU004713/1-564 QLSYYYMGFY IHSCPKMKYK GQYRPSDLLC PETYVWVPIE QCLPSLENSK ENSP00000358039/1-518 QLSYYYMGFY IHSCPKMKYK GQYRPSDLLC PETYVWVPIE QCLPSLENSK ENSBTAP00000004132/1-518 QLSYYYMGFY IHSCPKMKYK GQYRPSDLLC PETYVWVPIE QCLPSLEKSK ENSTTRP00000002035/1-488 QLSYYYMGFY IHSCPKMKYK GQYRPSDLLC PETYVWVPIE QCLPSLENSK 501 550 bmy_07050T0/1-431 LMRLSMKKHN INI------- ---------- ---------- ---------- BACU004713/1-564 YCRFNQDPEA VDEGRSKEPD RLQVFYKKAI MPYGVYKKQR RDPGGEAAVL ENSP00000358039/1-518 YCRFNQDPEA VDEDRSTEPD RLQVFHKRAI MPYGVYKKQQ KDPSEEAAVL ENSBTAP00000004132/1-518 YCRFNQDPEA VDEGRSKEPD RLQVFYKKAI MPYGVYKQQQ RDPSEAAAVL ENSTTRP00000002035/1-488 YCRFNQDPEA VDGDRSQEPD RLQVFYKKAI MPYGVYKKQQ RDPSEEAAVL 551 600 bmy_07050T0/1-431 ---------- --------- BACU004713/1-564 QYAGLVGQTC AERMLLFRD ENSP00000358039/1-518 QYASLVGQKC SERMLLFRN ENSBTAP00000004132/1-518 QYARLVGQAC SERMLLFRN ENSTTRP00000002035/1-488 QYASLVGQTC SERMLLFRN