KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:23:12 2014 Check: 00 .. Name: ENSP00000284274/1-352 Len: 352 Check: 6788 Weight: 1.00 Name: ENSBTAP00000004138/1-352 Len: 352 Check: 9651 Weight: 1.00 Name: ENSTTRP00000002058/1-352 Len: 352 Check: 6570 Weight: 1.00 Name: BACU012879/1-238 Len: 352 Check: 820 Weight: 1.00 Name: bmy_05716T0/1-177 Len: 352 Check: 4057 Weight: 1.00 // 1 50 ENSP00000284274/1-352 MSRGTMPQPE AWPGASCAET PAREAAATAR DGGKAAASGQ PRPEMQCPAE ENSBTAP00000004138/1-352 MSRGTMPQPE AWSGASCTEK PAWEAGAAAP EGGKSAAGGP PRVAVQCPSE ENSTTRP00000002058/1-352 MSRGTMLQPG AWPGESCAEK PAREAGAAAL EGEKAVAGGQ PRVAVRCPAE BACU012879/1-238 ---------- ---------- ---------- ---------- ---------- bmy_05716T0/1-177 ---------- ---------- ---------- ---------- ---------- 51 100 ENSP00000284274/1-352 HEEDMYRAAD EIEKEKELLI HERGASEPRL SVAPEMDIMD YCKKEWRGNT ENSBTAP00000004138/1-352 HEEDMYRAAD EIEKEKELLI HERGSSEARL SVAPEMDIMD YCKKEWRGNT ENSTTRP00000002058/1-352 HEEDMYRAAD EIEKEKELLI HERGSSEPRL SVAPEMDIMD YCKKEWRGNT BACU012879/1-238 ---------- ---------- ---------- -----MDIMD YCKKEWRGNT bmy_05716T0/1-177 ---------- ---------- ---------- -----MDIMD YCKKEWRGNT 101 150 ENSP00000284274/1-352 QKATCMKMGY EEVSQKFTSI RRVRGDNYCA LRATLFQAMS QAVGLPPWLQ ENSBTAP00000004138/1-352 QKATCMKKGY EEVSQKFTSI RRVRGDNYCA LRATLFQAMS QPAALPSWLQ ENSTTRP00000002058/1-352 QKATCMKKGY EEVSQKFTSI RRVRGDNYCA LRATLFQAMS QPAALPSWLQ BACU012879/1-238 QKATCMKK-- ---------- ---------- -------AMS QPAALPSWLQ bmy_05716T0/1-177 QKATCMKKGY EEVSQKFTSI RRVRGDNYCA LRATLFQAMS QPAALPSWLQ 151 200 ENSP00000284274/1-352 DPELMLLPEK LISKYNWIKQ WKLGLKFDGK NEDLVDKIKE SLTLLRKKWA ENSBTAP00000004138/1-352 DPELTLLPEK LISKYSWIKQ WKLGLKFEGK SKDLVDKIKE SLALLRKKWA ENSTTRP00000002058/1-352 DPELTLLPEK LISKYSWIKQ WKLGLKFEGK SEALVDKIKE SLTLLRKKWT BACU012879/1-238 DPELTLLPEK LISKYSWIKQ WKLGLKFEGK SEALVDKIKE SLTLLRKKWT bmy_05716T0/1-177 DPELTLLPEK LISKYSWIKQ WKLGLKFEGK SEALVDKIKE SLTLLRKK-- 201 250 ENSP00000284274/1-352 GLAEMRTAEA RQIACDELFT NEAEEYSLYE AVKFLMLNRA IELYNDKEKG ENSBTAP00000004138/1-352 SLAELRTAEA RQMACDELFT NEEEEYSLYE AVKFLMLNRA IELYDDKEKG ENSTTRP00000002058/1-352 DLAELRTAEA RQIACDELFT NEEEEYSLYE AVKFLMLNRA IELYDDKEKG BACU012879/1-238 GLAELRTAEA RQIACDELFT NEEEEYSLYE AVKFLMLNRA IELYDDKEKG bmy_05716T0/1-177 ---------- ---------- ---------- ---------- ---------- 251 300 ENSP00000284274/1-352 KEVPFFSVLL FARDTSNDPG QLLRNHLNQV GHTGGLEQVE MFLLAYAVRH ENSBTAP00000004138/1-352 REVPFFSVLL FARDTSSDPG QLLRNHLNQV GHTGGLEQVE MFLLAYAVRH ENSTTRP00000002058/1-352 REVPFFSVLL FARDTSGDPG QLLRNHLNQV GHAGGLEQVE MFLLAYAVRH BACU012879/1-238 KEVPFFSVLL FARDTSNDPG QLLRNHLNQV GHTGGLEQVE MFLLAYTVRH bmy_05716T0/1-177 ---------- ---------- ---------- --------VE MFLLAYAVRH 301 350 ENSP00000284274/1-352 TIQVYRLSKY NTEEFITVYP TDPPKDWPVV TLIAEDDRHY NIPVRVCEET ENSBTAP00000004138/1-352 TIQVYRLSKY GTEEFVTVYP TDAPRDWPVV TLIAEDDRHY NVPVRVCEET ENSTTRP00000002058/1-352 TIQVYRLSKY STEEFITVYP TDAPRDWPVV TLIAEDDRHY NIPVRVCEET BACU012879/1-238 AIQVYRLSKY STEEFVTVYP TDPPGDWPVV TLIAEDDRHY NIPVRVCEET bmy_05716T0/1-177 AIQVYRLSKY STEEFVTVYP TDPPGDWPVV TLIAEDDRHY NIPVRVCEET 351 400 ENSP00000284274/1-352 SL ENSBTAP00000004138/1-352 SL ENSTTRP00000002058/1-352 SL BACU012879/1-238 SL bmy_05716T0/1-177 SL