KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:23:15 2014 Check: 00 .. Name: BACU006149/1-178 Len: 382 Check: 9245 Weight: 1.00 Name: ENSP00000303423/1-379 Len: 382 Check: 1956 Weight: 1.00 Name: ENSBTAP00000004159/1-375 Len: 382 Check: 324 Weight: 1.00 Name: ENSTTRP00000008411/1-371 Len: 382 Check: 4098 Weight: 1.00 Name: bmy_21058T0/1-292 Len: 382 Check: 9888 Weight: 1.00 // 1 50 BACU006149/1-178 MAAADSVGAA AQGGEPGQPD TKP---PQPH PSPPQPPQEE --------AA ENSP00000303423/1-379 MAATEGVGEA AQGGEPGQPA QPP---PQPH PPPPQQQHKE EMAAEAGEAV ENSBTAP00000004159/1-375 MAAADGVGEA AQGGDPGQPE PPPPPQPHPP PPPPQPPQEE -------AAA ENSTTRP00000008411/1-371 MAAADGVGEA AQGGEPGQPE PPP---PQPH PPPPQLPQEE --------AA bmy_21058T0/1-292 ---------- ---------- ---------- ---------- ---------- 51 100 BACU006149/1-178 ASPMDEGFLS LDLPTYVLYR DRAEGADRDP VLQNDGPNAA VQIIYSEKFQ ENSP00000303423/1-379 ASPMDDGFVS LDSPSYVLYR DRAEWADIDP VPQNDGPNPV VQIIYSDKFR ENSBTAP00000004159/1-375 ASPMDDGFLS LDSPTYVLYR DRPEWADIDP VPQNDGPNPV VQIIYSEKFQ ENSTTRP00000008411/1-371 ASPMDDGFLS LDSPTYVLYR DRAEWADIDP VPQNDGPNPV VQIIYSEKFQ bmy_21058T0/1-292 -MQLCALFL- ---------- ---------- ---------- --------VQ 101 150 BACU006149/1-178 DVYDYFRTVL QRDERSERAF KLTRDAIELN AANYTVWYFR RVLLKSLQKD ENSP00000303423/1-379 DVYDYFRAVL QRDERSERAF KLTRDAIELN AANYTVWHFR RVLLKSLQKD ENSBTAP00000004159/1-375 DVYDYFRAVL QRDERSERAF KLTRDAIELN AANYTVWHFR RVLLKSLQKD ENSTTRP00000008411/1-371 DVYDYFRAVL QRDERSERAF KLTRDAIELN AANYTVWHFR RVLLKSLQKD bmy_21058T0/1-292 DVYDYFRAVL QRDERSERAF KLTRDAIELN AANYTVWHFR RVLLKSLQKD 151 200 BACU006149/1-178 LHEEMNYITA IIEEQPPKL- ---------- ---------- ---------- ENSP00000303423/1-379 LHEEMNYITA IIEEQPKNYQ VWHHRRVLVE WLRDPSQELE FIADILNQDA ENSBTAP00000004159/1-375 LHEEMNYISA IIEEQPKNYQ VWHHRRVLVE WLRDPSQELE FIADILTQDA ENSTTRP00000008411/1-371 LHEEMNYITA IIEEQPKNYQ VWHHRRVLVE WLRDPSQELE FIADILNQDA bmy_21058T0/1-292 LHEEMNYITA IIEEQPKNYQ VWHHRRVLVE WLRDPSQELE FIADILNQDA 201 250 BACU006149/1-178 ---------- ---------- ---------- ---------- ---------- ENSP00000303423/1-379 KNYHAWQHRQ WVIQEFKLWD NELQYVDQLL KEDVRNNSVW NQRYFVISNT ENSBTAP00000004159/1-375 KNYHAWQHRQ WVIQEFKLWD NELQYVDQLL KEDVRNNSVW NQRYFVISNT ENSTTRP00000008411/1-371 KNYHAWQHRQ WVIQEFKLWD NELHYVDQLL KEDVRNNSVW NQRYFVISNT bmy_21058T0/1-292 KNYHAWQHRQ WVIQEFKLWD NELQYVDQLL KEDVRNNSVW NQRYFVISNT 251 300 BACU006149/1-178 ---------- ---------- ---------- SSLAAQASAR GMAERP---- ENSP00000303423/1-379 TGYNDRAVLE REVQYTLEMI KLVPHNESAW NYLKGILQDR GLSKYPNLLN ENSBTAP00000004159/1-375 TGYNDRAILE REVQYTLEMI KLVPHNESAW NYLKGILQDR GLSKYPNLLN ENSTTRP00000008411/1-371 MGYNDRAVLE REVQYTLEMI KLVPHNESAW NYLKGILQDR GLSKYPNLLN bmy_21058T0/1-292 TGYNDRAVLE REVQYTLEMI KLVPHNESAW NYLKGILQDR GLSKYPNLLN 301 350 BACU006149/1-178 ---------- ---------- ---------- ------ISGA ---------- ENSP00000303423/1-379 QLLDLQPSHS SPYLIAFLVD IYEDMLENQC DNKEDILNKA LELCEILAKE ENSBTAP00000004159/1-375 QLLDLQPSHS SPYLIAFLVD IYEDMLENQC DNKEDILNKA LELCEILAKE ENSTTRP00000008411/1-371 QLLDLQPSHS SPYLIAFLVD IYEDMLENQC DNKEDILNKA LELCEILAKE bmy_21058T0/1-292 QLLDLQPSHS SPYLIAFLVD IYEDMLENQC DNKEDILNKA LELCEILAKE 351 400 BACU006149/1-178 ---------- ---------- ---------- -- ENSP00000303423/1-379 KDTIRKEYWR YIGRSLQSKH STENDSPTNV QQ ENSBTAP00000004159/1-375 KDTIRKEYWR YIGRSLQSKH STESDPPTNV QQ ENSTTRP00000008411/1-371 KDTIRKEYWR YIGRSLQSKH STESDPPTNV QQ bmy_21058T0/1-292 KDTIRKEYWR YIGRSLQSKH STESDPPTNV QQ