KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:23:15 2014 Check: 00 .. Name: bmy_12064T0/1-194 Len: 229 Check: 9696 Weight: 1.00 Name: ENSTTRP00000001038/1-227 Len: 229 Check: 3004 Weight: 1.00 Name: BACU004163/1-107 Len: 229 Check: 2335 Weight: 1.00 Name: ENSP00000306496/1-229 Len: 229 Check: 4422 Weight: 1.00 Name: ENSBTAP00000004165/1-229 Len: 229 Check: 4658 Weight: 1.00 // 1 50 bmy_12064T0/1-194 ---------- -MLQQDERFP WQSGNLLKQI EQMYV----- ---------- ENSTTRP00000001038/1-227 MASEMESSLE ASFSSSGAMS GASGFLPPAR SRIFKIIVIG DSNVGKTCLT BACU004163/1-107 MASEMESSLE ASFSSSGAMS GASGFLPPAR SRIFKIIVIG DSNVGKTCLT ENSP00000306496/1-229 MAEEMESSLE ASFSSSGAVS GASGFLPPAR SRIFKIIVIG DSNVGKTCLT ENSBTAP00000004165/1-229 MASDIESSLE ASFSSSGAVS GGSGFLPPAR SRIFKIIVIG DSNVGKTCLT 51 100 bmy_12064T0/1-194 ---CCGK--- QSEVEIKGEI ALKTTIVN-- -VLIQLWDTA GQERFRKSMV ENSTTRP00000001038/1-227 YRFCAGRFPD RTEATIGVDF RERAVEIDGE RIKXXXXXXX XXXXXXXXXX BACU004163/1-107 YRFCAGRFPD RTEATIGVDF RERAVEIDGE RIKVSGWQTV KK-------- ENSP00000306496/1-229 YRFCAGRFPD RTEATIGVDF RERAVEIDGE RIKIQLWDTA GQERFRKSMV ENSBTAP00000004165/1-229 YRFCAGRFPD RTEATIGVDF RERAVEIDGE RIKIQLWDTA GQERFRKSMI 101 150 bmy_12064T0/1-194 QHYYRNVHAV VFVYDMTNMA SFHSLPSWIE ECKQHLLAND IPRILVGNKC ENSTTRP00000001038/1-227 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX BACU004163/1-107 ---------- ---------- ---------E GC-------- ---------- ENSP00000306496/1-229 QHYYRNVHAV VFVYDMTNMA SFHSLPSWIE ECKQHLLAND IPRILVGNKC ENSBTAP00000004165/1-229 QHYYRNVHAV VFVYDMTNMA SFHSLPSWIE ECKQHLLATD IPRILVGNKC 151 200 bmy_12064T0/1-194 DLRSAIQVPT DLAQKFADTH SMPLFETSAK NPNDNDHVEA IFMTLAHKLK ENSTTRP00000001038/1-227 XXRSAIQV-T DLAQ-FADTY SMPLFETSAK NPNDNDHVEA IFMTWAHKLK BACU004163/1-107 ---------- ---------- ---------- -PGDD----- ---------- ENSP00000306496/1-229 DLRSAIQVPT DLAQKFADTH SMPLFETSAK NPNDNDHVEA IFMTLAHKLK ENSBTAP00000004165/1-229 DLRSAIQVPT DLAQKFADTH SMPLFETSAK NPNDNDHVEA IFMTLAHKLK 201 250 bmy_12064T0/1-194 SHKPLMLSQP PDNGITLKPE PKPPVTCWC ENSTTRP00000001038/1-227 SHKPLMLSQP PDNGITLKPE PKPAVTCWC BACU004163/1-107 --------KG PNRSVG---- --------- ENSP00000306496/1-229 SHKPLMLSQP PDNGIILKPE PKPAMTCWC ENSBTAP00000004165/1-229 SHKPLMLSQP PDNGITLKPE PKPAMTCWC