KEY:
    ENSP* - Homo sapiens (Human)
    ENSBTA* - Bos taurus (Cow)
    ENSTTR* - Tursiops truncatus (Dolphin)
    bmy_* - Balaena mysticetus (Bowhead whale)
    BACU* - Balaenoptera acutorostrata (Minke whale)

Copy from below the line for a valid .msf file.

----------------------------------------------------------------------------------
                
NoName   MSF: 4  Type: P  Thu May 15 16:23:18 2014  Check: 00 ..

 Name: ENSP00000221973/1-215     Len:    215  Check:  7370  Weight:  1.00
 Name: bmy_21604T0/1-112         Len:    215  Check:  7979  Weight:  1.00
 Name: ENSBTAP00000004191/1-173  Len:    215  Check:  9748  Weight:  1.00
 Name: ENSTTRP00000003746/1-214  Len:    215  Check:  3701  Weight:  1.00

//


                          1                                                   50
ENSP00000221973/1-215     MYSFMGGGLF CAWVGTILLV VAMATDHWMQ YRLSGSFAHQ GLWRYCLGNK 
bmy_21604T0/1-112         ---------- ---------- --------MQ YRLSGAFAHQ GLWRYCLGSK 
ENSBTAP00000004191/1-173  MYSFMGGGLF CAWVGTILLV VATATDHWMQ YRLSGAFAHQ GLWRYCLGTK 
ENSTTRP00000003746/1-214  MYSFMGGGLF CAWVGTILLV VATATDHWMQ YRLSGAFAHQ GLWRYCLGSK 


                          51                                                 100
ENSP00000221973/1-215     CYLQTDSIGE PPGQGPGRAW GKSRADLGAQ GHLYSRWRTL RLKEGKGATQ 
bmy_21604T0/1-112         CYLQTESI-- ---------- ---------- ---------- ---------- 
ENSBTAP00000004191/1-173  CYLQTESI-- ---------- ---------- ---------- ---------- 
ENSTTRP00000003746/1-214  CYLQTESIGE APGQGLGCAW GQSGADLQWK GHL-CRWRTL WLGEGKRPAQ 


                          101                                                150
ENSP00000221973/1-215     AYWNATRAFM ILSALCAISG IIMGIMAFAH QPTFSRISRP FSAGIMFFSS 
bmy_21604T0/1-112         AYWNATRAFM ILSSLCATSG IIMGIMAFAQ QPTFTRFSRS FSAGIVFFAS 
ENSBTAP00000004191/1-173  AYWNATRAFM ILSSLCATSG IIMGIVAFAQ QPTFTRLSRP FSAGIMFFAS 
ENSTTRP00000003746/1-214  AYWNATRAFM ILSSLCATSG IIMGIMAFAQ QPTFTRFSRP FSAGIVFFAS 


                          151                                                200
ENSP00000221973/1-215     TLFVVLALAI YTGVTVSFLG RRFGDWRFSW SYILGWVAVL MTFFAGIFYM 
bmy_21604T0/1-112         ---------- ---ITVTFLG RRFGDWRFSW SYILGWVALL MTFFA----- 
ENSBTAP00000004191/1-173  TFFVLLALAI YTGVTVSFLG RRFGDWRFSW SYILGWVALL MTFFAGIFYM 
ENSTTRP00000003746/1-214  TFFVLLALAI YTGVTVSFLG RRFGDWRFSW SYILGWVALL MTFFAGIFYM 


                          201                                                250
ENSP00000221973/1-215     CAYRVHECRR LSTPR 
bmy_21604T0/1-112         ---------- ----- 
ENSBTAP00000004191/1-173  CAYRMHECRR LSTPR 
ENSTTRP00000003746/1-214  CAYRMNECRR LSTPR