KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 4 Type: P Thu May 15 16:23:18 2014 Check: 00 .. Name: ENSTTRP00000003748/1-604 Len: 1194 Check: 8355 Weight: 1.00 Name: ENSBTAP00000004195/1-708 Len: 1194 Check: 5457 Weight: 1.00 Name: bmy_21602T0/1-671 Len: 1194 Check: 4955 Weight: 1.00 Name: BACU008265/1-1116 Len: 1194 Check: 3217 Weight: 1.00 // 1 50 ENSTTRP00000003748/1-604 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000004195/1-708 ---------- ---------- ---------- ---------- ---------- bmy_21602T0/1-671 ---------- ---------- ---------- ---------- ---------- BACU008265/1-1116 MPADVNLPQR PQVLGPEERD GSCEAGPVLL PQMVFWPEVQ IWFVSSQTLL 51 100 ENSTTRP00000003748/1-604 ---------- ---------- ---------- ---------- ---------M ENSBTAP00000004195/1-708 ---------- ---------- ---------- ---------- ---------M bmy_21602T0/1-671 ---------- ---------- ---------- ---------- ---------M BACU008265/1-1116 YNPVIPKLKT QYCFSTTDSD TPPLLPGDEM VSWLERAIPL WDAQEPSVSE 101 150 ENSTTRP00000003748/1-604 LLPLLLAVLW A--------- ---------- ---------- ---------- ENSBTAP00000004195/1-708 FLPLFLAMLW G--------- ---------- ---------- ---------- bmy_21602T0/1-671 LPPLLLAVLW A--------- ---------- ---------- ---------- BACU008265/1-1116 MPPLLLSLLW AGSLAQDRRI RLEVRGPVTV QEGLCVCVPC SFYYPWSYWD 151 200 ENSTTRP00000003748/1-604 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000004195/1-708 ---------- ---------- ---------- ---------- ---------- bmy_21602T0/1-671 ---------- ---------- ---------- ---------- ---------- BACU008265/1-1116 NSAPAFGYWF REGANEKLDA PVATNNPGRK VQEETQGRFH LLGDHGDNNC 201 250 ENSTTRP00000003748/1-604 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000004195/1-708 ---------- ---------- ---------- ---------- ---------- bmy_21602T0/1-671 ---------- ---------- ---------- ---------- ---------- BACU008265/1-1116 SLDIRDARRR DEGSYFFRVE RGSALWSYKS KPLSLHVTAL THTPHILISG 251 300 ENSTTRP00000003748/1-604 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000004195/1-708 ---------- ---------- ---------- ---------- ---------- bmy_21602T0/1-671 ---------- ---------- ---------- ---------- ---------- BACU008265/1-1116 TLESGRPGNL TCSVPWACEQ GTPPIFSWTS AALTSLGPRT HLSSVLTLTP 301 350 ENSTTRP00000003748/1-604 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000004195/1-708 ---------- ---------- ---------- ---------- ---------- bmy_21602T0/1-671 ---------- ---------- ---------- ---------- ---------- BACU008265/1-1116 QPQDHSTNLT CQVKLPTSGV IVERTIQLNV TWLTLALRPQ DHGTNLTCRV 351 400 ENSTTRP00000003748/1-604 ---------- ---------- ---------- ----GSWAQN PAFQLQVQEL ENSBTAP00000004195/1-708 ---------- ---------- ---------- ----GSQALD S-FKLQVQEF bmy_21602T0/1-671 ---------- ---------- ---------- ----GSWAQD PRFQLQVQEL BACU008265/1-1116 TLPGAGVSTE RTARLNVSYA PQNLDIRVFR GNSTGSWAQD PGFQLQVQEL 401 450 ENSTTRP00000003748/1-604 VRVQEGLCVV VPCSVSYPVI GWVPSTPAYG FWFKDPTATD SGLPVATNKP ENSBTAP00000004195/1-708 VMVQEGLCMV VPCSIFYPSR GWSPTTPAYG FWFRDQTPKP S-LPVATNKP bmy_21602T0/1-671 VRVQEGLCVV VPCSISYPAI GWVPSTPAYG FWFKDQTATD SGLPVATNKP BACU008265/1-1116 VRVQEGLCVV VPCSISYPTI GWVPSTPAYG FWFKDQTATD SGLPVATNKP 451 500 ENSTTRP00000003748/1-604 DRDVQTDTQG RFQLLGDPRQ NCSLLIRDVH MEDSASYFFR LERGYYVRYN ENSBTAP00000004195/1-708 DQDVDTSTQG RFQLLGDPSE SCSLLIREAH LEDSAVYFFR FERGDYVKYN bmy_21602T0/1-671 GQDVQTHTQG RFQLLGNARQ NCSLLIRDVR MEDSALYFFR LERGHYVRYN BACU008265/1-1116 GQDVQTHTEG RFQLLGNARQ NCSLLIRNVR MEDSALYFFR LERGHYVRYN 501 550 ENSTTRP00000003748/1-604 FVEYKFRLEV TXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSBTAP00000004195/1-708 FMEYKFYLEV TALTQKPEIY VPEILQPGHQ VTLFCAFNWI FDECPVPTLS bmy_21602T0/1-671 FVEYKFRLEV TALTQKPEIY IPETLKPGHQ VTLICMFDWP FEECPAPTLS BACU008265/1-1116 FMEYKFRLEV TALTQKPEIY IPETLKPGHQ VTLICMFDWP FEECPAPTLS 551 600 ENSTTRP00000003748/1-604 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSBTAP00000004195/1-708 WIGNTVSPNE ASSRTSYFSE LTFTPRPQDH NTELTCRVDF SREGVSTENT bmy_21602T0/1-671 WRGAAVSSHE ARPRASYLLA LTFTPRPQDH GTKLTCRVDV SRKGLSTENT BACU008265/1-1116 WRGAAVSAHE ARPRASYLLA LTFTPRPQDH GTKLTCRVDV SRKGLSTENT 601 650 ENSTTRP00000003748/1-604 XXXXXXXAPK DVVISISQTD VSALEPQGNS PHLEVQKGQF LRLLCTADSV ENSBTAP00000004195/1-708 VRLSVAYAPK DLVISISYTD EPALEPRGDS PHLEVQKGQS LRLLCTADSL bmy_21602T0/1-671 VLLSVAYAPK DLVISISQTD VSALKPQGNS PHLEVQKGQF LRLLCTADSM BACU008265/1-1116 VLLSVAYAPK DLVISISQTD VSALEPQGNS PHLEVQKGQF LRLLCTADSM 651 700 ENSTTRP00000003748/1-604 PLATLSWALQ DRILSWSHPS GSRTLELVLP RVKAEDAGRY TCRAENGLGS ENSBTAP00000004195/1-708 PLATLSWTLQ DRVLSWSHPL GSTALELALP RVKAEDAGRY TCRAENRLGF bmy_21602T0/1-671 PLATLSWALQ DRILSWSHPS GSRTLELVLP RVKAEDAGRY TCRAENRLGS BACU008265/1-1116 PLATLSWALQ DRILSWSHPS GSRTLELVLP RVKAEDAGRY TCRAENGLGS 701 750 ENSTTRP00000003748/1-604 QSRSLELSVQ YAPENLKVMV SQGNRT---- ---------- ---------- ENSBTAP00000004195/1-708 LSRSLDLSVQ YAPENLKVMV SQANRT---- ---------- ---------- bmy_21602T0/1-671 QSRSLELFVQ YAPENLKVMV SQGNRTGRKG DQGNQGSSVP NWEPRHLECQ BACU008265/1-1116 QSRSLELFVQ YAPENLKVMV SQGNRT---- ---------- ---------- 751 800 ENSTTRP00000003748/1-604 ---------- ---------V LENFRNGTSL PVLEGQSLRL LCVAHSNPPA ENSBTAP00000004195/1-708 ---------- ---------A LENLESGASL RVLEGQSLRL LCVAHSNPPA bmy_21602T0/1-671 QEEGPCALSC SSILPLPSLV LENFRNGTSL PVLEGQSLRL LCVAHSNPPA BACU008265/1-1116 ---------- ---------V LENFRNDTSL PVLEGQSLRL LCVAHSNPPA 801 850 ENSTTRP00000003748/1-604 RLSWARGGQT LSPSQPSDPG VLELPQIQTE HEGEFTCRAQ NPLGSQNTSL ENSBTAP00000004195/1-708 QLSWARLGRT VSPSQPSDPG VLELPQIQTE QEGEFTCRAQ NPLGSQNNSL bmy_21602T0/1-671 RLSWARGGQT LSPSQPSDPG VLELPQIQTE HEGELTCGAQ NPLGSQNISV BACU008265/1-1116 RLSWARGGQT LSPSQPSDPG VLELPQIQTE HEGEFTCRAQ NPLGSQNISL 851 900 ENSTTRP00000003748/1-604 SLSVVYPPQL LGPSCSQEEE GLHCDCSSRA QPAPSLRWRL GEGLLEGNFS ENSBTAP00000004195/1-708 SLFVVSPPQL LGPSCSQEDE GLRCSCSSRA RPAPSLRWRL GERLLEGELS bmy_21602T0/1-671 SLSVVYPPQL LGPSCSLEDE GLHCSCSSRA QPAPSLRWRL GEGLLEGKLG BACU008265/1-1116 SLSVVYPPQL LGPSCSLEDE GLHCDCSCRA QPAPSLRWRL GEGLLEGKLG 901 950 ENSTTRP00000003748/1-604 NASFKVTSSS AGPWVNSSLS LREGLSSGLR LGCEAQNVHG AQSATVLLLP ENSBTAP00000004195/1-708 NASFEVASSS AGPWANSSLS LREGLSSGLR LSCEALNGHG AQSGSVLLLP bmy_21602T0/1-671 NASFKVTSSS AGPWANSSLS LSEGLSSGLR LSCEALNVHG AQSATVLLLP BACU008265/1-1116 NASFKVTSSS AGPWANSSLS LSEGLSSGLR LSCEALNVHG AQSATVQLLP 951 1000 ENSTTRP00000003748/1-604 DEKGFA---- --SKAFSSG- ---------- --------IF LGIGLMTLLV ENSBTAP00000004195/1-708 DEKGLA---- --SGAFASG- ---------- --------IS LGIGVTTLLF bmy_21602T0/1-671 DEKGFA---- --SKAFSSG- ---------- --------TF LGIGLMTLLS BACU008265/1-1116 GQPTLILDFS CLQPIFNPGQ PRLVFNLLSV PAPKITMYSF MGGGLFCAWV 1001 1050 ENSTTRP00000003748/1-604 LCFILIVARA LRKKWTQA-- ---------- -ETPRSRVSR RSTLLDYINV ENSBTAP00000004195/1-708 LCFIFILVRT LRKKWTQAKV PAP-APAPAP GEAPRSRFSR RSTILDYINV bmy_21602T0/1-671 LCLILII--- ---------- ---------- ------KIQK EPHLV----- BACU008265/1-1116 GTILLVV-AT ATDHWMQYRL SGAFAHQGLW RYCLGSKCYL QTESIAYWNA 1051 1100 ENSTTRP00000003748/1-604 VPKTGPL--- ---------- ---------- ---------- ---------- ENSBTAP00000004195/1-708 IPKAGPLIEL RDQEKKQKAK PSSPSQPPPA DGHSLEARKN QKELHPVSHN bmy_21602T0/1-671 ---------- ---------- ---------- ---------- -------SHN BACU008265/1-1116 TRAFMIL--- ---------- ---------- ---------- -SSLCATSGI 1101 1150 ENSTTRP00000003748/1-604 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000004195/1-708 CPGPKSSLQA SEAENNQEEL HYAVLNFP-- -----GLRPW ETQRPEGTHP bmy_21602T0/1-671 CPGPKSSPQA PESENNQEEL HYAVLNFP-- -----GLRPW DTQRDT--HP BACU008265/1-1116 IIGIMAFAQQ PTFTRFSRPF SAGIVFFAST FFVLLALAIY TGVTVTFLGR 1151 1200 ENSTTRP00000003748/1-604 ---------- ---------- ---------- ---------- ---- ENSBTAP00000004195/1-708 EYAEIQFH-- ---------- ---------- ---------- ---- bmy_21602T0/1-671 EYAEIQFH-- ---------- ---------- ---------- ---- BACU008265/1-1116 RFGDWRFSWS YILGWVALLM TFFAGIFYMC AYRMNECRRL STPR