KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:23:20 2014 Check: 00 .. Name: ENSTTRP00000010437/1-939 Len: 1211 Check: 1729 Weight: 1.00 Name: ENSBTAP00000004201/1-1090 Len: 1211 Check: 8232 Weight: 1.00 Name: ENSP00000273221/1-963 Len: 1211 Check: 7096 Weight: 1.00 Name: bmy_21616T0/1-620 Len: 1211 Check: 3015 Weight: 1.00 Name: BACU007914/1-708 Len: 1211 Check: 4338 Weight: 1.00 // 1 50 ENSTTRP00000010437/1-939 ---------- ---------- --VEGEAPSS ETGTSLDSPS AYHQGPSAPG ENSBTAP00000004201/1-1090 ---------- ---------- --VEGEAPSS EPGTSLDSPS AYHQGPLAPG ENSP00000273221/1-963 MWCLHCNSER TQSLLELELD SGVEGEAPSS ETGTSLDSPS AYPQGPLVPG bmy_21616T0/1-620 ---------- ---------- ---------- ---------- ---------- BACU007914/1-708 MWCLHCHSER TQSLLELELD SGVEGEAPSS ETGTSLDSPS ADRQG----- 51 100 ENSTTRP00000010437/1-939 SGLGPDHSEH TPGGAYGLYA GPPG-Q-QRT RRPKLQHSTS ILRKQAEEEA ENSBTAP00000004201/1-1090 SGLSPEPYEH APSGAYGLYA GPPGQQQQRA RRPRLQHSTS ILRKQAEEEA ENSP00000273221/1-963 SSLSPDHYEH TSVGAYGLYS GPPGQQ-QRT RRPKLQHSTS ILRKQAEEEA bmy_21616T0/1-620 ---------- ---------- ---------- ---------- ---------- BACU007914/1-708 ----PDHSEH TPGGAYGLYA GPPG-Q-QRT RRPKLQHSTS ILRKQAEEEA 101 150 ENSTTRP00000010437/1-939 IKRSRSLSES YELSSDLQDK QVEMLERKYG GRLVTRHAAR TIQTAFRQYQ ENSBTAP00000004201/1-1090 IKRSRSLSES YELSSDLQDK QVEMLERKYG GRLVTRHAAR TIQTAFRQYQ ENSP00000273221/1-963 IKRSRSLSES YELSSDLQDK QVEMLERKYG GRLVTRHAAR TIQTAFRQYQ bmy_21616T0/1-620 ---------- ---------- ---------- ---------- ---------- BACU007914/1-708 IKRSRSLSES YELSSDLQDK QVEMLERKYG GRLVTRHAAR TIQTAFRQYQ 151 200 ENSTTRP00000010437/1-939 MNXXXERLRS SMSENRMSRR IVLSNMRMQF SFEGPEKVHS SYFEGKQVSV ENSBTAP00000004201/1-1090 MNKNFERLRS SMSEKRLSRR IVLSNMRVQL SFEGPEKAHS SFFEGKQVSV ENSP00000273221/1-963 MNKNFERLRS SMSENRMSRR IVLSNMRMQF SFEGPEKVHS SYFEGKQVSV bmy_21616T0/1-620 ---------- ---------- ---------- ---------- ---------- BACU007914/1-708 MNKNFERLRS SMSENRMSRR IVLSNMRMQF SFEGPEKVRS SYFEGKQVSV 201 250 ENSTTRP00000010437/1-939 TDKGAPLEAL VPAECRDLG- -PPPALQAPA PAGDFADAIT ELEDAFSRQV ENSBTAP00000004201/1-1090 TDGDSPLGSL GPAECGDLGP PPPPALQAPA PASDFADAIT ELEDAFSRQV ENSP00000273221/1-963 TNDGSQLGAL VSPECGDLS- -EPTTLKSPA PSSDFADAIT ELEDAFSRQV bmy_21616T0/1-620 ---------- ---------- ---------- ---------- ---------- BACU007914/1-708 TDKGAPLEAL VPAECGDLG- -PPPALQAPA PAGDFADAIT ELEDAFSRQN 251 300 ENSTTRP00000010437/1-939 KSLAESIDDA LNCRSLHTEG APAPDVGRTR DAEPSPALHG -AEHRQLDEM ENSBTAP00000004201/1-1090 KSLAESIDDA LNCRSLH--- --AVEGAPTP AAEPSSGLHG AAEQRRLDEM ENSP00000273221/1-963 KSLAESIDDA LNCRSLHTEE APALDAARAR DTEPQTALHG -MDHRKLDEM bmy_21616T0/1-620 ---------- ---------- ---------- ---------- ---------- BACU007914/1-708 FNLA------ ---------- ---------- ---------- ---------- 301 350 ENSTTRP00000010437/1-939 TASYSDVTLY IDEEELSPPL PPMQAGRRPS SAESDLRLRP GGAAQDYWAL ENSBTAP00000004201/1-1090 TASYSDVTLY IDEDELSPPL PAAQAGCRPS SGESDLRLRA GAAAQDYWAL ENSP00000273221/1-963 TASYSDVTLY IDEEELSPPL PLSQAGDRPS STESDLRLRA GGAAPDYWAL bmy_21616T0/1-620 ---------- ---------- ---------- ---------- ---------- BACU007914/1-708 ---------- ---------- ---------- ---------- ---------- 351 400 ENSTTRP00000010437/1-939 AHKDDKGDTD TSCRSTPSLG PQEPRLRGEH LPLLTIEPPS DSSVDLSDRS ENSBTAP00000004201/1-1090 AHKDDKGDTD TSCRSTPSL- --EPRARVEH LPLLTIEPPS DSSADLSDRS ENSP00000273221/1-963 AHKEDKADTD TSCRSTPSLE RQEQRLRVEH LPLLTIEPPS DSSVDLSDRS bmy_21616T0/1-620 ---------- ---------- ---------- ---------- ---------- BACU007914/1-708 ---------- ---------- ---------- ---------- ---------- 401 450 ENSTTRP00000010437/1-939 DRSSLKRQSA YERGLGGPQG SPKHGPH-GP PRGLPREEPE PRARAPRPLD ENSBTAP00000004201/1-1090 DRSSLKRQSA YERGLGGPQG SPKHGPH-GP PRGLPREEPE LRARPPRPLD ENSP00000273221/1-963 ERGSLKRQSA YERSLGGQQG SPKHGPHSGA PKSLPREEPE LRPRPPRPLD bmy_21616T0/1-620 ---------- ---------- ---------- ---------- ---------- BACU007914/1-708 ---------- ---------- ---------- ---------- ---------- 451 500 ENSTTRP00000010437/1-939 GHLAINGSAN RQSKSESDYS DGDNDSLNST SNSNDTINCS SESSSRDSLR ENSBTAP00000004201/1-1090 AHLAINGSAN RQSKSESDYS DGDNDSLNST SNSNDTINCS SESSSRDSLR ENSP00000273221/1-963 SHLAINGSAN RQSKSESDYS DGDNDSINST SNSNDTINCS SESSSRDSLR bmy_21616T0/1-620 ---------- ---------- ---------- ---------- ---------- BACU007914/1-708 ---------- ---------- ---------- ---------- ---------- 501 550 ENSTTRP00000010437/1-939 EQTLSKQTYH KETRNSWDSP TFSNDVIRRR HYRIGLNLFN KKPEKGVQYL ENSBTAP00000004201/1-1090 EQTLSKQTYH KETRNSWDSP AFSNDVIRKR LYRIGLNLFN KKPEKGVQYL ENSP00000273221/1-963 EQTLSKQTYH KEARNSWDSP AFSNDVIRKR HYRIGLNLFN KKPEKGVQYL bmy_21616T0/1-620 ---------- ---------- ---------- ---------- ---------- BACU007914/1-708 ---------- ---------- ---------- ---FGLENGT RKPEKGIQYL 551 600 ENSTTRP00000010437/1-939 IERGFVPDTP VGVAHFLLQR KGLSRQMIGE FLGNRQKQFN RDVLDCVVDE ENSBTAP00000004201/1-1090 IERGFVPDTP VGVAHFLLQR KGLSRQMIGE FLGNRQKQFN RDVLDCVVDE ENSP00000273221/1-963 IERGFVPDTP VGVAHFLLQR KGLSRQMIGE FLGNRQKQFN RDVLDCVVDE bmy_21616T0/1-620 MERGFVPDTP VGVAHFLLQR KGLSRQMIGE FLGNRQKQFN RDVLDCVVDE BACU007914/1-708 IERGFVPDTP VGVAHFLLQR KGLSRQMIGE FLGNRQKQFN RDVLDCVVDE 601 650 ENSTTRP00000010437/1-939 MDFSAMELDE ALRKFQAHIR VQ-------- ---------- ---------- ENSBTAP00000004201/1-1090 MDFSAMELDE ALRKFQAHIR VQ-------- ---------- ---------- ENSP00000273221/1-963 MDFSTMELDE ALRKFQAHIR VQ-------- ---------- ---------- bmy_21616T0/1-620 MDFSAMELDE ALRKFQAHIR VQ-------- ---------- ---------- BACU007914/1-708 MDFSAMELDE ALRKFQAHIR VQGEAQKVER LIEAFSCVVD EMDFSAMELD 651 700 ENSTTRP00000010437/1-939 ---------- ---GEAQKVE RLIEAFSQRY CICNPGVVRQ FRNPDTIFIL ENSBTAP00000004201/1-1090 ---------- ---GEAQKVE RLIEAFSQRY CICNPGVVRQ FRNPDTIFIL ENSP00000273221/1-963 ---------- ---GEAQKVE RLIEAFSQRY CICNPGVVRQ FRNPDTIFIL bmy_21616T0/1-620 ---------- ---GEAQKVE RLIEAFSQRY CICNPGVVRQ FRNPDTIFIL BACU007914/1-708 EALRKFQAHI RVQGEAQKVE RLIEAFSQRY CICNPGVVRQ FRNPDTIFIL 701 750 ENSTTRP00000010437/1-939 AFAIILLNTD MYSPNVKPER KMKLEDFVKN LRGVDDGEDI PREMLIGIYE ENSBTAP00000004201/1-1090 AFAIILLNTD MYSPNVKPER KMKLEDFVKN LRGVDDGEDI PRELLVGIYE ENSP00000273221/1-963 AFAIILLNTD MYSPNVKPER KMKLEDFIKN LRGVDDGEDI PREMLMGIYE bmy_21616T0/1-620 AFAIILLNTD MYSPNVKPER KMKLEDFVKN LRGVDDGEDI PREMLIGIYE BACU007914/1-708 AFAIILLNTD MYSPNVKPER KMKLEDFVKN LRGVDDGEDI PREMLIGIYE 751 800 ENSTTRP00000010437/1-939 RIRKRELENS EDHVSQVQKV EKLIVXXXXI GSLHHGLGCX XXXXXXXXXX ENSBTAP00000004201/1-1090 RIRRRELKTS EDHVSQVQKV EKLIVGKKPI GSLHHGLGCV LSLPHRRLVC ENSP00000273221/1-963 RIRKRELKTN EDHVSQVQKV EKLIVGKKPI GSLHPGLGCV LSLPHRRLVC bmy_21616T0/1-620 RIRKRELKTN EDHVSQVQKV EKLIVGKKPI GSLHHGLGCV LSLPHRRLVC BACU007914/1-708 RIRKRELKTN EDHVSQVQKV EKLIVGKKP- ---------V LSLPHRRLVC 801 850 ENSTTRP00000010437/1-939 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XVTKIFQKKK NSVTYSFRQS ENSBTAP00000004201/1-1090 YCRLFEVPDP NKPQKLGLHQ REIFLFNDLL VVTKIFQKKK NSVTYSFRQS ENSP00000273221/1-963 YCRLFEVPDP NKPQKLGLHQ REIFLFNDLL VVTKIFQKKK NSVTYSFRQS bmy_21616T0/1-620 YCRLFEVPDP NKPQKLGLHQ REIFLFNDLL VVTKIFQKKK NSVTYSFRQS BACU007914/1-708 YCRLFEVPDP NKPQKLGLHQ REIFLFNDLL VVTKIFQKKK NSVTYSFRQS 851 900 ENSTTRP00000010437/1-939 FSLYGMQVLL FENQYYPNGI RLTSAVPGAD IKVLINFNAP NPQDRKKFTD ENSBTAP00000004201/1-1090 FSLYGMQVLL FENQYYPNGI RLTSAVPGAD IKVLINFNAP NPQDRKKFTD ENSP00000273221/1-963 FSLYGMQVLL FENQYYPNGI RLTSSVPGAD IKVLINFNAP NPQDRKKFTD bmy_21616T0/1-620 FSLYGMQVLL FENQYYPNGI RLTSAVPGAD IKVLINFNAP NPQDRKKFTD BACU007914/1-708 FSLYGMQVLL FENQYYPNGI RLTSAVPGAD IKVLINFNAP NPQDRKKFTD 901 950 ENSTTRP00000010437/1-939 DLRESIAEVQ EMEKHRIEXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSBTAP00000004201/1-1090 DLRESIAEVQ EMEKHRIEAE LEKQKGVVRP SMSQCPSLKK EPGGGTLSRA ENSP00000273221/1-963 DLRESIAEVQ EMEKHRIESE LEKQKGVVRP SMSQCSSLKK ESGNGTLSRA bmy_21616T0/1-620 DLRESIAEVQ EMEKHRIETE LEKQKGVVRP SVSQCSSLKK EPGGGTLSRA BACU007914/1-708 DLRESIAEVQ EMEKHRIETE LEKQKGVVRP SMSQCSSLKK EPGGGTLSRA 951 1000 ENSTTRP00000010437/1-939 XXXXXXXXXX XXXXXXXXXX XXXXXXXXKR E--------- ---------- ENSBTAP00000004201/1-1090 CLDDSYAGGE GLKRSALSSS LRDLSEAGKR G--------- ---------- ENSP00000273221/1-963 CLDDSYASGE GLKRSALSSS LRDLSEAGKR G--------- ---------- bmy_21616T0/1-620 CLDDSYASGE GLKRSALSSS LRDLSEAEED GPVPAACRKT PETCPYVLDW BACU007914/1-708 CLDDSYASGE GLKRSALSSS LRDLSEAATL A--------- ---------- 1001 1050 ENSTTRP00000010437/1-939 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000004201/1-1090 -----RRSSA GSLESNVEGS IISSPHMRRR ATSTRDCPSR PH------QA ENSP00000273221/1-963 ---------- ---------- ---------- ---------- ---------- bmy_21616T0/1-620 VGAKLSRTRH ALAEMGLSAR EAQTPRLPRP CMPPAWRSRA PHRLFGLQRR BACU007914/1-708 ---------- ---------- ---------- ---------- ---------- 1051 1100 ENSTTRP00000010437/1-939 ---------- ---------- ---------- ---------- --------RR ENSBTAP00000004201/1-1090 TPNSSSLLGS LFGSKRGKPP PQAHLPPAPA PP-------- -----RPATG ENSP00000273221/1-963 ---------- ---------- ---------- ---------- --------RR bmy_21616T0/1-620 GGPSLAVLTC AGELHQHETV HLAHTRPCPT PPPSWAPYLG VREGSPLPRP BACU007914/1-708 ---------- ---------- ---------- ---------- -----LQTPR 1101 1150 ENSTTRP00000010437/1-939 SSAGSLESNV ---------- ---------- -----EFQPF E--------- ENSBTAP00000004201/1-1090 HPQGPVEGPL AGPVHGHHGQ YCCLQQNPPP YHHHHHHHPP PHIQHAHQHH ENSP00000273221/1-963 SSAGSLESNV ---------- ---------- -----EFQPF E--------- bmy_21616T0/1-620 TCPGPVEGPL QAPVHGHHGQ YCPLQQNPPP YHHHHHYHPP QHIQHAHQYP BACU007914/1-708 EAVFPLPPGL C--------- ---------- -----KYDPG R--------- 1151 1200 ENSTTRP00000010437/1-939 ---------- ---------- ---------- ---------- -PLQQPVLCS ENSBTAP00000004201/1-1090 HGPHGGHPAY GAHAHGHPPL PA------GH AGHAAHHHGQ PPAPPLPTSS ENSP00000273221/1-963 ---------- ---------- ---------- ---------- -PLQPSVLCS bmy_21616T0/1-620 HGPHGGQPAY GAHTHSHPPL PSAHAGHPGH VGHPVHHHGQ PPAPPPLPSS BACU007914/1-708 ---------- ---------- ---------- ---------- ---SPKVTNT 1201 1250 ENSTTRP00000010437/1-939 ---------- - ENSBTAP00000004201/1-1090 KAKPSGISTI V ENSP00000273221/1-963 ---------- - bmy_21616T0/1-620 KAKASGISTI V BACU007914/1-708 ---------- -