KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:23:21 2014 Check: 00 .. Name: ENSP00000262301/1-567 Len: 568 Check: 6649 Weight: 1.00 Name: ENSBTAP00000004206/1-561 Len: 568 Check: 8395 Weight: 1.00 Name: BACU009240/1-255 Len: 568 Check: 2928 Weight: 1.00 Name: ENSTTRP00000005557/1-565 Len: 568 Check: 839 Weight: 1.00 Name: bmy_01898T0/1-296 Len: 568 Check: 7126 Weight: 1.00 // 1 50 ENSP00000262301/1-567 MRPDSPTMAA PAESLRRRKT GYSDPEPESP PAPGRGPAGS PAHLHTGTFW ENSBTAP00000004206/1-561 -------MAA PRESLRRRKA GAGDPEPEAP PGQGRDLKGR PARLRAGTFW BACU009240/1-255 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000005557/1-565 MRSDGPAMAT PEEPLRRRKA GVAGPAPESS PGPGRDPAGC PARLRAGTFW bmy_01898T0/1-296 ---------- --MPL----- ---------- ---------- --------VW 51 100 ENSP00000262301/1-567 LTRIVLLKAL AFVYFVAFLV AFHQNKQLIG DRGLLPCRVF LKNFQQYFQD ENSBTAP00000004206/1-561 LTRIVLLRAL AFVYFVAFLV AFHQNKQLIG DRGLLPCRAY LQSVQRHFGG BACU009240/1-255 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000005557/1-565 LTRIVLLKAL AFVYFVAFLV AFHQNKQLIG DRGLLPCRVY LRSVQQHFRG bmy_01898T0/1-296 TPRITV---- ---------- ---------- ---------- -----EHVKC 101 150 ENSP00000262301/1-567 RTSWEVFSYM PTILWLMDWS DMNSNLDLLA LLGLGISSFV LITGCANMLL ENSBTAP00000004206/1-561 RVSWDALSYA PTILWLLDWS HMDANLDALA LLGLGISSFI LVSGCANMVL BACU009240/1-255 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000005557/1-565 K-SWETVSYA PTVLWLLDWS HMDFNLDALA LLGLGISSFI LVSGCANMVL bmy_01898T0/1-296 G-GWRDLSLH P--------- ---------- ---------- ---------- 151 200 ENSP00000262301/1-567 MAALWGLYMS LVNVGHVWYS FGWESQLLET GFLGIFLCPL WTLSRLPQHT ENSBTAP00000004206/1-561 MAALWVLYMS LVNVGQIWYS FGWESQLLET GFLGIFLCPL WTLSALPRGT BACU009240/1-255 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000005557/1-565 MAALWVLYMS LVNVGQIWCF --WESQLLET GFLGIFLCPL WTLSPLPRGT bmy_01898T0/1-296 ---------- ---------- ---------- ---------- ---------- 201 250 ENSP00000262301/1-567 PTSRIVLWGF RWLIFRIMLG AGLIKIRGDR CWRDLTCMDF HYETQPMPNP ENSBTAP00000004206/1-561 PTSWVVMWGF RWLIFRIMLG AGLIKIRGDR CWRDLTCMDF HYETQPVPNP BACU009240/1-255 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000005557/1-565 PTSRIVLWGY RWLIFRIMLG AGLIKIRGDQ CWRNLTCMDF HYETQPVPNP bmy_01898T0/1-296 ---------- ---------- ---------- ---------- ---------- 251 300 ENSP00000262301/1-567 VAYYLHHSPW WFHRFETLSN HFIELLVPFF LFLGRRACII HGVLQILFQA ENSBTAP00000004206/1-561 VAYFLHRSPW WFHRFETLSN HFLELVVPFF IFLGRRMCIV HGALQVLFQV BACU009240/1-255 ---------- ---------- ---------- ---------- ---------M ENSTTRP00000005557/1-565 MAYFLHHSPW WFHRFETLSN HFLELVVPFF VFLGRQMCIL HGALQILFQM bmy_01898T0/1-296 ---------- ---------- ---------- ---------- --------QM 301 350 ENSP00000262301/1-567 VLIVSGNLSF LNWLTMVPSL ACFDDATLGF LFPSGPGSLK DRVLQMQ-RD ENSBTAP00000004206/1-561 VLIISGNLSF LNWLTIVPSL ACFDDATLGG LFPSGPGRLK DQVLKIQEEE BACU009240/1-255 VIIISGNLSF LNWLTIVPSL ACFDDATLGF LFPSGPGCLK DQVLRMQEEE ENSTTRP00000005557/1-565 VLIISGNLSF LNWLTIVPSL ACFDDATLGF LFPSGPGCLK DQVLRMQEEE bmy_01898T0/1-296 VLIISGNLSF LNWLTIVPSL ACFDDATLGF LFPSGPGCLK DQVLRMQEEE 351 400 ENSP00000262301/1-567 IRGARPEPRF GSVVRRAANV SLGVLLAWLS VPVVLNLLSS RQVMNTHFNS ENSBTAP00000004206/1-561 TRGARAPRTR GSVARGTVNL ALGILVAWLS IPVVLNLLSP RQVMNSSFNP BACU009240/1-255 ARGARAPRTR GSVARHTVNL ALGVLVAWLS VPVVLNLLSP RQVMNSSFNP ENSTTRP00000005557/1-565 ARGARAPWTH GSVARHTVNL ALGVLVAWLS IPVVLNLLSP QQVMNSSFNP bmy_01898T0/1-296 ARGARAPRTR GSVARHTVNL ALGVLVAWLS VPVVLNLLSP RQVMNSSFNP 401 450 ENSP00000262301/1-567 LHIVNTYGAF GSITKERAEV ILQGTASSNA SAPDAMWEDY EFKCKPGDPS ENSBTAP00000004206/1-561 LRIVNTYGAF GSITRERTEV ILQGTASANA SAPDSAWEDY EFKCKPGDPR BACU009240/1-255 LRIVNTYGAF GSITKERTEV ILQGTASPNA SAPDAKWEDY EFKCKPGDLR ENSTTRP00000005557/1-565 LRIVNTYGAF GSITKERTEV ILQGTASPNA SAPDAKWEDY EFKCKPGDLK bmy_01898T0/1-296 LRIVNTYGAF GSITKERTEV ILQGTASPNA SAPDAKWEDY EFKCKPGDLR 451 500 ENSP00000262301/1-567 RRPCLISPYH YRLDWLMWFA AFQTYEHNDW IIHLAGKLLA SDAEALSLLA ENSBTAP00000004206/1-561 RRPCLISPYH HRLDWLMWFA AFQTYEHNEW IIHLAGKLLA NDAQALSLLA BACU009240/1-255 RRPCLISPYH HRLDWLMWFA AFQTYEHNEW IIHLAGKLLA NDAQALSLLA ENSTTRP00000005557/1-565 RRPCLISPYH HRLDWLMWFA AFQTYEHNEW IIHLAGKLLA NDAQALSLLA bmy_01898T0/1-296 RRPCLISPYH HRLDWLMWFA AFQTYEHNEW IIHLAGKLLA NDAQALSLLA 501 550 ENSP00000262301/1-567 HNPFAGRPPP RWVRGEHYRY KFSRPGGRHA AEGKWWVRKR IGAYFPPLSL ENSBTAP00000004206/1-561 RNPFEGRDPP RWVRGEHYRY KFSRPGGRHA AEGKWWIRRR LGPYFPPLSR BACU009240/1-255 LNPFAGRAPP RTDRASDKE- ----PGASKS ACGS---RVK L----PPACR ENSTTRP00000005557/1-565 LNPFAGRAPP XXXXXXXXXY KFSRPGGTHA AEGKWWIRKR LGPYFPPLSF bmy_01898T0/1-296 LNPFAGRAPP RWVRGEHYRY KFSRPGGTHA AEGKWWIRKR LGPYFPPLSF 551 600 ENSP00000262301/1-567 EELRPYFRDR GWPLPGPL ENSBTAP00000004206/1-561 QDLRGYFTSR QWPYPEPE BACU009240/1-255 NG-QPLPGGC PWD-PANG ENSTTRP00000005557/1-565 QDLKGYFRSR EWPYPKPE bmy_01898T0/1-296 QDLKGYFRSR EWPYPKPE