KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:23:27 2014 Check: 00 .. Name: ENSP00000305974/1-670 Len: 670 Check: 6013 Weight: 1.00 Name: ENSBTAP00000004256/1-666 Len: 670 Check: 2491 Weight: 1.00 Name: ENSTTRP00000006316/1-668 Len: 670 Check: 435 Weight: 1.00 Name: bmy_12159T0/1-668 Len: 670 Check: 275 Weight: 1.00 Name: BACU016338/1-220 Len: 670 Check: 2156 Weight: 1.00 // 1 50 ENSP00000305974/1-670 MGETEKRIET HRIRCLSKLK MFLLAITCAF VSKTLSGSYM NSMLTQIERQ ENSBTAP00000004256/1-666 MGETEERIET HRIRCLSKLK MFLLAITCAF VSKTLSGSYM NSMITQIERQ ENSTTRP00000006316/1-668 MGETEKRIET HRIRCLSKLK MFLLAITCAY VSKTLSGSYM NSMLTQIERQ bmy_12159T0/1-668 MGETEKRIET HRIRCLSKLK MFLLAITCAY VSKTLSGSYM NSMLTQIERQ BACU016338/1-220 ---------- ---------- ---------- ---------- ---------- 51 100 ENSP00000305974/1-670 FNIPTSLVGF INGSFEIGNL LLIIFVSYFG TKLHRPIMIG IGCVVMGLGC ENSBTAP00000004256/1-666 FNIPTSLVGF INGSFEIGNL LLIIFVSYFG TKLHRPIMIG VGCVVMGLGC ENSTTRP00000006316/1-668 FNIPTSLVGF INGSFEIXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX bmy_12159T0/1-668 FNIPTSLVGF INGSFEIGNL LLIIFVSYFG TKLHRPIMIG VGCVVMGLGC BACU016338/1-220 ---------- ---------- ---------- ---------- ---------- 101 150 ENSP00000305974/1-670 FLKSLPHFLM NQYEYESTVS VSGNLSSNSF LCMENGTQIL RPTQDPSECT ENSBTAP00000004256/1-666 FLQSLPHFLM GRYEYESTVS VSGNLSSNSF LCMENGTQIF KPTKDPSECV ENSTTRP00000006316/1-668 XXXXXXXXXX XXYEYESTVS VSGNLSSNSF LCMENGTQSF KPTEDPSECV bmy_12159T0/1-668 FLQSLPHFLM DRYEYESTVS VSGNLSSNSF LCMENGTQIF KPTEDPSECV BACU016338/1-220 ---------- ---------- ---------- ---------- ---------- 151 200 ENSP00000305974/1-670 KEVKSLMWVY VLVGNIVRGM GETPILPLGI SYIEDFAKFE NSPLYIGLVE ENSBTAP00000004256/1-666 KEVKSLMWVY VLVGNIIRGI GETPIMPLGI SYIEDFAKFE NSPLYIGLIK ENSTTRP00000006316/1-668 KEVKSLMWVY VLVGNIIRGI GETPIMPLGI SYIEDFAKSE NSPLYIGFIE bmy_12159T0/1-668 KEVKSLMWVY VLVGNIIRGI GETPIMPLGI SYIEDFAKSE NSPLYIGFIE BACU016338/1-220 ---------- ---------- -----MPLGI SYIEDFAKSE NSPLYIGFIE 201 250 ENSP00000305974/1-670 TGAIIGPLIG LLLASFCANV YVDTGFVNTD DLIITPTDTR WVGAWWFGFL ENSBTAP00000004256/1-666 TGGIIGPLIG LSLASFCANV YVDTESVNTD DLTITPSDTR WVGAWWIGFL ENSTTRP00000006316/1-668 TGAIIGPLIG LSLASFCANV YVDTGSVNTD DLTITPIDTR WVGAWWFGFL bmy_12159T0/1-668 TGAIIGPLIG LSLASFCANV YVDTGSVNTD DLTITPTDTR WVGAWWFGFL BACU016338/1-220 TGAIVGPLIG LSLASFCANV YVDTGSVNT- ---------- ---------- 251 300 ENSP00000305974/1-670 ICAGVNVLTA IPFFFLPNTL PKEGLETNAD IIKNENEDKQ KEEVKKEKYG ENSBTAP00000004256/1-666 ICAGVNVLTA IPFFFLPKTL PKEGLEDNAE IIKNDK-EKQ -EDIKKKRDA ENSTTRP00000006316/1-668 VCAGVNVLTA IPFFVLPKTL PKEGLEDIAE TIKNDKEEKQ -SEVRKKSVG bmy_12159T0/1-668 VCAGVNVLTA IPFFILPKTL PKEGLEDIAE TVKNDKEEKQ -SEVRKKRVG BACU016338/1-220 ---------- ---------- ---------- ---------- ---------- 301 350 ENSP00000305974/1-670 ITKDFLPFMK SLSCNPIYML FILVSVIQFN AFVNMISFMP KYLEQQYGIS ENSBTAP00000004256/1-666 ITKDFLPFMK SLLCNPIYML FILISVLQFN AFVSMVSFMP KYMEQHYGKS ENSTTRP00000006316/1-668 ITKDFLPFMK SLLCNPVYML FILISVLQFN AFVNMISFMP KYLEQHYGKS bmy_12159T0/1-668 ITKDFLPFMK SLLCNPVYML FILISVLQFN AFVNMISFMP KYLEQHYGKS BACU016338/1-220 ---DFLPFMK SLMCNPVYML FILISVLQFN AFVNMISFMP KYLEQHYGKS 351 400 ENSP00000305974/1-670 SSDAIFLMGI YNLPPICIGY IIGGLIMKKF KITVKQAAHI GCWLSLLEYL ENSBTAP00000004256/1-666 ASEAIFLLGI YNFPPICIGY IVGGLFMKKF KITAVQAAHI GCWLSFTEYL ENSTTRP00000006316/1-668 ASDAIFLIGI YNLPPICIGY IVGGLIMKKF KITVIQAAHI GCWLSLIEYL bmy_12159T0/1-668 ASDAIFLIGI YNLPPICIGY IVGGLIMKKF KITVIQAAHI GCWLSLIEYL BACU016338/1-220 ASDAIFLI-- ---------- ---------- ---------- ---------- 401 450 ENSP00000305974/1-670 LYFLSFLMTC ENSSVVGINT SYEGIPQDLY VENDIFADCN VDCNCPSKIW ENSBTAP00000004256/1-666 LHFLCFFMIC DSSSVAGLTT SYEGIHQNLH VKN-FLANCN MDCNCPTKVW ENSTTRP00000006316/1-668 LYFLCFLMIC DNSSVAGITT SYEGXXXXXX XXXXXXXXXX XXXXXXXXXX bmy_12159T0/1-668 LYFLCFLMIC DNSSVAGITT SYEGVQQDLH VGNVILADCN MDCNCPTKIW BACU016338/1-220 ---------- ---------- ---------- ---------- ---------- 451 500 ENSP00000305974/1-670 DPVCGNNGLS YLSACLAGCE TSIGTGINMV FQNCSCIQTS GNSSAVLGLC ENSBTAP00000004256/1-666 DPVCGNNGLS YTSACLAGCE ISSGTGRKMV FQNCSCIQTP GNSSAVLGLC ENSTTRP00000006316/1-668 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXV FQNCSCIQTP GNSSAVLGLC bmy_12159T0/1-668 DPVCGNDGLS YMSACLAGCE TSSGTGINMV FQNCSCIQTP GNSSAVLGLC BACU016338/1-220 ---------- ---------- ---------- ---------- ---------- 501 550 ENSP00000305974/1-670 DKGPDCSLML QYFLILSAMS SFIYSLAAIP GYMVLLRCMK SEEKSLGVGL ENSBTAP00000004256/1-666 DKGKDCSMML QYFLILSVFS SFIFSLSAIP GYMVLLRCVK PEEKSLGVGL ENSTTRP00000006316/1-668 DKGQDCSMML QYFLILSVVS SFIYSLSAIP GYMVLLRCIK PEEKSLGVGL bmy_12159T0/1-668 DKGQDCSMML QYFLILSVVS SFIYSLSAIP GYMVLLRCIK PEEKSLGVGL BACU016338/1-220 ---------- ---------- ---------- ---------- ---------- 551 600 ENSP00000305974/1-670 HTFCTRVFAG IPAPIYFGAL MDSTCLHWGT LKCGESGACR IYDSTTFRYI ENSBTAP00000004256/1-666 HAFCTRVLAG IPAPIYFGAL VDSTCLHWGT LKCGESGACR IYDSNSFRYI ENSTTRP00000006316/1-668 HAFCTRVLAG IPAPIYFGAL VDSTCLHWGT LKCGESGACR IYDSTNFRYI bmy_12159T0/1-668 HAFCTRVLAG IPAPIYFGAL VDSTCLHWGT LKCGESGACR IYDSTNFRYI BACU016338/1-220 --------AG IPAPIYFGAL VDSTCLHWGT LKCGESGACR IYDSTNFRYI 601 650 ENSP00000305974/1-670 YLGLPAALRG SSFVPALIIL ILLRKCHLPG ENASSGTELI ETKVKGKENE ENSBTAP00000004256/1-666 YLGIPAALRG SSYIPAFLIL FILRKYRLPG ENASSET-ML VAKFTGKENE ENSTTRP00000006316/1-668 YLGLPAVLRG SSYIPAFLIL IILRKYRLPE ENASSET-ML EAKFTGKENE bmy_12159T0/1-668 YLGLPAALRG SSYIPAFLIL LILRKHRLPE ENASSET-ML EAKFTGKENE BACU016338/1-220 YLGLPAALRG SSYIPAFLIL LILRKHRLPE KNSSSET-ML EAKFTGKENE 651 700 ENSP00000305974/1-670 CKDIYQKSTV LKDDELKTKL ENSBTAP00000004256/1-666 GKEMDQNAKV LNDDELKTKL ENSTTRP00000006316/1-668 GKETDQNSKV LNDDELKTKL bmy_12159T0/1-668 GKEMDQNSKV LNDDELKTKL BACU016338/1-220 GKEMDQNSKV MNDDELKTKL