KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 4 Type: P Thu May 15 16:23:27 2014 Check: 00 .. Name: bmy_22176T0/1-390 Len: 628 Check: 6071 Weight: 1.00 Name: ENSTTRP00000004976/1-479 Len: 628 Check: 6291 Weight: 1.00 Name: BACU012122/1-567 Len: 628 Check: 914 Weight: 1.00 Name: ENSBTAP00000004259/1-480 Len: 628 Check: 3110 Weight: 1.00 // 1 50 bmy_22176T0/1-390 -------MAA AAAGA----- ---------- ---------- ---------- ENSTTRP00000004976/1-479 -------MAA AAAG------ ---------- ---------- ---------R BACU012122/1-567 MRPGPLFSTV GTPGARKCQA LRIEGEQDIH TVPTFQQIPS KQRSKPDNFR ENSBTAP00000004259/1-480 -------MAA AASGA----- ---------- ---------- ---------- 51 100 bmy_22176T0/1-390 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000004976/1-479 SW-------- ---------- ---------- ---------- ---------- BACU012122/1-567 PWWKMSITDV LSADDIAAAL QECQDPDTFE PQKFFQTSGL AKMSASQVKD ENSBTAP00000004259/1-480 ---------- ---------- ---------- ---------- ---------- 101 150 bmy_22176T0/1-390 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000004976/1-479 ---------- ---------- ---------- ---------- ---------- BACU012122/1-567 VFRFIDNDQS GYLDEEELKF FLQKFESGAR ELTESETKSL MAAADNDGDG ENSBTAP00000004259/1-480 ---------- ---------- ---------- ---------- ---------- 151 200 bmy_22176T0/1-390 -----GAGAA QEKQFPPALL SFFIYNPRFG PREGEEENKI LFYYPNEVEK ENSTTRP00000004976/1-479 --------AA QEKQFPPALL SFFIYNPRFG PREGEEENKI LFYYPNEVEK BACU012122/1-567 KIGADGAGAA QEKQFPPALL SFFIYNPRFG PREGEEENKI LFYYPNEVEK ENSBTAP00000004259/1-480 -----GAGAA QEKQFPPALL SFFIYNPRFG PREGEEENKI LFYYPNEVEK 201 250 bmy_22176T0/1-390 NEKIRNVGLC EAIVQFTRTF SPSKPAKSLH TQKNRQFFNE PEENFWMVMV ENSTTRP00000004976/1-479 NEKIRNVGLC EAIVQFTRTF SPSKPAKSLH TQKNRQFFNE PEENFWMVMV BACU012122/1-567 NEKIRNVGLC EAIVQFTRTF SPSKPAKSLH TQKNRQFFNE PEENFWMVM- ENSBTAP00000004259/1-480 NEKIRNVGLC EAIVQFTRTF SPSKPAKSLH TQKNRQFFNE PEENFWMVMV 251 300 bmy_22176T0/1-390 VRNPIIEKQS KDGKPVVEYQ EEELLDKVYS SVLQQCYSMY KLFNGTFLRA ENSTTRP00000004976/1-479 VRNPIIEKQS KDGKPVVEYQ EEELLDKVYS SVLQQCYSMY KLFNGTFLRA BACU012122/1-567 ---------- ---------- -----DKVYS SVLQQCYSMY KLFNGTFLRA ENSBTAP00000004259/1-480 VRNPIIEKQS KDGKPVVEYQ EEELLDKVYS SVLQQCYSMY KLFNGTFLRA 301 350 bmy_22176T0/1-390 MEDGGVKLLK ERLEKFFHRY LQTLHLQSCD LLDIFGGISF FPLDKMTYLK ENSTTRP00000004976/1-479 MEDGGVKLLK ERLEKFFHRY LQTLHLQSCD LLDIFGGISF FPLDKMTYLK BACU012122/1-567 MEDGGVKLLK ERLEKFFHRY LQTLHLQSCD LLDIFGGISF FPLDKMTYLK ENSBTAP00000004259/1-480 MEDGGVKLLK ERLEKFFHRY LQTLHLQSCD LLDIFGGISF FPLDKMTYLK 351 400 bmy_22176T0/1-390 IQSFINRMEE SLSIVKYTAF LYNDQLIWSG LEQDDMRILY KYLTTSLFPR ENSTTRP00000004976/1-479 IQSFINRMEE SLSIVKYTAF LYNDQLIWSG LEQDDMRILY KYLTTSLFPR BACU012122/1-567 IQSFINRMEE SLSIVKYTAF LYNDQLIWSG LEQDDMRILY KYLTTSLFPR ENSBTAP00000004259/1-480 IQSFINRMEE SLSIVKYTAF LYNDQLIWSG LEQDDMRILY KYLTTSLFPR 401 450 bmy_22176T0/1-390 HIEPELAGRD SPIRAEMPGN LQHYGRFLTG PLNLNDPEAK CRFPKIFVNT ENSTTRP00000004976/1-479 HIEPELAGRD SPIRAEMPGN LQHYGRFLTG PLNLNDPEAK CRFPKIFVNT BACU012122/1-567 HIEPELAGRD SPIRAEMPGN LQHYGRFLTG PLNLNDPEAK CRFPKIFVNT ENSBTAP00000004259/1-480 HIEPELAGRD SPIRAEMPGN LQHYGRFLTG PLNLNDPEAK CRFPKIFVNT 451 500 bmy_22176T0/1-390 DDTYEALHLI VYKAMSAAVC FMIDASIQPT LDFCRRLDSI VGPQLTVLAS ENSTTRP00000004976/1-479 DDTYEALHLI VYKAMSAAVC FMIDASIQPT LDFCRRLXXX XXXXXXXXXX BACU012122/1-567 DDTYEALHLI VYKAMSAAVC FMID------ ---------- ---------- ENSBTAP00000004259/1-480 DDTYEALHLI VYKAMSAAVC FMIDASIQPT LDFCRRLDSI VGPQLTVLAS 501 550 bmy_22176T0/1-390 DICEQFNINK RISGF----V LCFVFAFKHL T--------- ---------- ENSTTRP00000004976/1-479 XXXXXXXXXX XXXXSEKEPQ FKFIY-FNHM NLAEKSTIHM RKTPSVSLTS BACU012122/1-567 ---DMMNIK- ----SEKEPQ FKFIY-FNHM NLAEKSTIHM RKTPSVSLTS ENSBTAP00000004259/1-480 DICEQFNINK RMSGSEKEPQ FKFIY-FNHM NLAEKSTVHM RKTPSVSLTS 551 600 bmy_22176T0/1-390 ---------G -----FGRI- ---------- ---------- --RVVFA--- ENSTTRP00000004976/1-479 VHPDLMKILG DINSDFTRVD EDEEIIVKAM SDYWVVGKKS DQRELYVILN BACU012122/1-567 VHPDLMKILG DINSDFTRVD EDEEIIVKAM SDYWVVGKKS DQRELYVILN ENSBTAP00000004259/1-480 VHPDLMKILG DINSDFTRVD EDEEIIVKAM SDYWVVGKKS DQRELYVILN 601 650 bmy_22176T0/1-390 ---------- ---------- -------- ENSTTRP00000004976/1-479 QKNANLIEVN EEVKKLCATQ FNNIFFLD BACU012122/1-567 QKNANLIEVN EEVKKLCATQ FSNIFFLD ENSBTAP00000004259/1-480 QKNANLIEVN EEVKKLCATQ FNNIFFLD