KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:23:30 2014 Check: 00 .. Name: ENSP00000268150/1-387 Len: 860 Check: 2643 Weight: 1.00 Name: ENSBTAP00000004272/1-431 Len: 860 Check: 976 Weight: 1.00 Name: ENSTTRP00000005448/1-388 Len: 860 Check: 3195 Weight: 1.00 Name: bmy_09048T0/1-470 Len: 860 Check: 2717 Weight: 1.00 Name: BACU016095/1-778 Len: 860 Check: 455 Weight: 1.00 // 1 50 ENSP00000268150/1-387 ---------- ---------- ---------- ---------M PRPRLLAALC ENSBTAP00000004272/1-431 ---------- ---------- ---------- ---------M PCPRLLAALC ENSTTRP00000005448/1-388 ---------- ---------- ---------- ---------M PCPRVLAALC bmy_09048T0/1-470 HVAQWEVLRC LIYSRPGEGV RTAGSEQPKH RVSGPHPHTM PGPRLLAALC BACU016095/1-778 ---------- ---------- ---------- ---------M PGTRLLAALC 51 100 ENSP00000268150/1-387 GALLCAPSLL VAL------- ---------- ---------- ---------- ENSBTAP00000004272/1-431 GALFCSSGLF AFSGDFCDSS QCLHGGTCLL NEDRTPPFYC LCPEGFTGLL ENSTTRP00000005448/1-388 GALLCASGLF AFS------- ---------- ---------- ---------- bmy_09048T0/1-470 GALLCASGLF AFSGDFCDSS QCLHGGTCLL DQDRKPPFHC LCPEGFTGLI BACU016095/1-778 GALLCASGLF AFS------- ---------- ---------- ---------- 101 150 ENSP00000268150/1-387 ------DICS KNPCHNGGLC EEISQEVRGD VFPSYTCTCL KGYAGNHCET ENSBTAP00000004272/1-431 CNETEHGPCF PNPCHNDAEC QVTDDSHRGD VFIQYICKCP LGYVGIHCET ENSTTRP00000005448/1-388 ------GPCF PNPCHNDAEC QVIDDFHRGD VFTQYICECP HGYTGIHCEI bmy_09048T0/1-470 CNETERGPCF PNPCHSGAEC QVIDDFHRGD VFTQYICKCP RGYTGIHCEI BACU016095/1-778 ------GPCF PNPCHSDAEC HVIDDFHRGD VFTQYICKCP HGYTGIHCEI 151 200 ENSP00000268150/1-387 KCVEPLGLEN GNIANSQIAA SSVRVTFLGL QHWVPELARL NRAGMVNAWT ENSBTAP00000004272/1-431 TCTSPLGMQT GAIADSQISA SSMHLGFMGL QRWAPELARL HQTGIVNAWT ENSTTRP00000005448/1-388 VCISPLGMET GAIADSQISA SSMHLGFMGL QRWAPYLARL HLTGIVNAWT bmy_09048T0/1-470 VCTSPLGMET GAIADSQISA SSMHLGFMGL QRWAPDLARL HLTGVVNAWT BACU016095/1-778 VCISPLGMET GAIADSQISA SSMHFGFMGL QRWAPDLARL HLTGIVNAWT 201 250 ENSP00000268150/1-387 PSSNDDNPWI QVNLLRRMWV TGVVTQGASR LASHEYLKAF KVAYSLNGHE ENSBTAP00000004272/1-431 SGNYDKNPWI QVNLMRKMWV TGVVTQGASR AGSAEYLKTF KVAYSTDGRQ ENSTTRP00000005448/1-388 SSNYDRSPWI QVNLMRKMRV TGVVTQGASR AGSAEYLKTF KVAYSTNGRK bmy_09048T0/1-470 SSNYDRNPWI QVNLMRKMRV TGVVTQGASR AGSAEYLKTF KVAYSTNGRK BACU016095/1-778 SSNYDRNPWI QVNLMRKMRV TGVVTQGASR AGSAEYLKTF KVAYSTNGRK 251 300 ENSP00000268150/1-387 FDFIHDVNKK -HKEFVGNWN KNAVHVNLFE TPVEAQYVRL YPTSCHTACT ENSBTAP00000004272/1-431 FQFIQVAGRS GDKIFIGNVN NSGLKINLFD TPLETQYVRL VPIICHRGCT ENSTTRP00000005448/1-388 FQFIQGAGES GDKIFMGNVD NSGLKVNLFE TPLEVQYVRL VPVICHRGCT bmy_09048T0/1-470 FQFIQGAGES GDKIFMGNVD NSGLKVNLFE TPLEVQYVRL VPMICHRGCT BACU016095/1-778 FQFIQGAGES GDKIFMGNVD NSGLKVNLFE TPLEVQYVRL VPVICHRGCT 301 350 ENSP00000268150/1-387 LRFELLGCEL NGCANPLGLK NNSIPDKQIT ASSSYKTWGL HLFSWNPSYA ENSBTAP00000004272/1-431 LRFELLGCEL NGCTEPLGLK DNTIPNKQIT ASSYYKTWGL SAFSWFPYYA ENSTTRP00000005448/1-388 LRFELLGCEL NXXXXXXGLK NNTIPSKQIT SSSFYKTWGL SAFSWYPSYA bmy_09048T0/1-470 LRFELLGCEL NGCAEPLGLK DNTIPSKQIT ASSFYKTWGL SAFSWYPSYA BACU016095/1-778 LRFELLGCEL NGCAEPLGLK NNTIPSKQIT ASSFYKTWGL SAFSWYPSFA 351 400 ENSP00000268150/1-387 RLDKQGNFNA WVAGSYGNDQ WLQVDLGSSK EVTGIITQGA RNFGSVQFVA ENSBTAP00000004272/1-431 RLDNQGKFNA WTAQTNSASE WLQIDLGSQK RVTGIITQGA RDFGHIQYVA ENSTTRP00000005448/1-388 RLDNQGKFNA WTAQTNSASE WLQIDLGSQK RVTGIITQGA RDFGHIQYVA bmy_09048T0/1-470 RLDNQGKFNA WTAQTNSASE WLQIDLGSQK RVTGIITQGA RDFGHIQYVA BACU016095/1-778 RLDNQGKFNA WTAQTNSASE WLQIDLGSQK RVTGIITQGA RDFGHIQYVA 401 450 ENSP00000268150/1-387 SYKVAYSNDS ANWTEYQDPR TGSSKIFPGN WDNHSHKKNL FETPILARYV ENSBTAP00000004272/1-431 AYRVAYGDDG VTWTEYKDPG ASESKIFPGN MDNNSHKKNI FETPFQARFV ENSTTRP00000005448/1-388 AYKVAYGDDG VNWTEYRDQG AVESKIFPGN MDNNSHKKNM FEAPFLARFV bmy_09048T0/1-470 AYKVAYGDSG ANWTEYRDQG AXESKIFPGN MDNNSHKKNM FEAPFLARFV BACU016095/1-778 AYKVAYGDDG VNWTEYRDQG AVESKIFPGN MDNNSHKKNM FEVPFLARFV 451 500 ENSP00000268150/1-387 RILPVAWHNR IALRLELLGC ---------- ---------- ---------- ENSBTAP00000004272/1-431 RIQPVAWHNR ITLRVELLGC ---------- ---------- ---------- ENSTTRP00000005448/1-388 RILPVAWHNR ITLRVELLGC ---------- ---------- ---------- bmy_09048T0/1-470 RILPVAWHNR ITLRVELLGC ---------- ---------- ---------- BACU016095/1-778 RILPVAWHNR ITLRVELLGY PCSPRAIAAA SLPQPPAFPG TPGCCRVHDV 501 550 ENSP00000268150/1-387 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000004272/1-431 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000005448/1-388 ---------- ---------- ---------- ---------- ---------- bmy_09048T0/1-470 ---------- ---------- ---------- ---------- ---------- BACU016095/1-778 MDLPLLVLLL PLCCVSGLPF YNGFYYSNSP NGWNAGKGHG EGIFNGVKLV 551 600 ENSP00000268150/1-387 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000004272/1-431 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000005448/1-388 ---------- ---------- ---------- ---------- ---------- bmy_09048T0/1-470 ---------- ---------- ---------- ---------- ---------- BACU016095/1-778 VETPEEILFS YRGANVTLPC RYHYEPALVS PRPVRIKWWK LSENGAPEQD 601 650 ENSP00000268150/1-387 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000004272/1-431 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000005448/1-388 ---------- ---------- ---------- ---------- ---------- bmy_09048T0/1-470 ---------- ---------- ---------- ---------- ---------- BACU016095/1-778 VLVAIGLRHR AFGDYRGRVH LWQEREREVS LEIRDLRLED YGRYRCEVID 651 700 ENSP00000268150/1-387 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000004272/1-431 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000005448/1-388 ---------- ---------- ---------- ---------- ---------- bmy_09048T0/1-470 ---------- ---------- ---------- ---------- ---------- BACU016095/1-778 GLEDESGLVE LELRGVVFPY QHPQGRYQFN FHEAQWACEE QDAVVASFEQ 701 750 ENSP00000268150/1-387 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000004272/1-431 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000005448/1-388 ---------- ---------- ---------- ---------- ---------- bmy_09048T0/1-470 ---------- ---------- ---------- ---------- ---------- BACU016095/1-778 LFRAWEEGLD WCNAGWLQDA SVQYPITQAR HPCGGLGLAP GVRSYGPRHR 751 800 ENSP00000268150/1-387 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000004272/1-431 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000005448/1-388 ---------- ---------- ---------- ---------- ---------- bmy_09048T0/1-470 ---------- ---------- ---------- ---------- ---------- BACU016095/1-778 RLHRYDVFCF AAALRGEVYY LEHPEKLTLA EAKEACQEDD AQIAKVGQLF 801 850 ENSP00000268150/1-387 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000004272/1-431 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000005448/1-388 ---------- ---------- ---------- ---------- ---------- bmy_09048T0/1-470 ---------- ---------- ---------- ---------- ---------- BACU016095/1-778 AAWKFHGLDR CDAGWLADGS ARYPVAHARH NCGSLEPGVR SFGFPDPHSR 851 900 ENSP00000268150/1-387 ---------- ENSBTAP00000004272/1-431 ---------- ENSTTRP00000005448/1-388 ---------- bmy_09048T0/1-470 ---------- BACU016095/1-778 KYGVYCYRPR