KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 4 Type: P Thu May 15 16:23:31 2014 Check: 00 .. Name: bmy_00388T0/1-395 Len: 401 Check: 2105 Weight: 1.00 Name: ENSTTRP00000014911/1-340 Len: 401 Check: 3302 Weight: 1.00 Name: ENSP00000289473/1-390 Len: 401 Check: 4683 Weight: 1.00 Name: ENSBTAP00000004279/1-392 Len: 401 Check: 1225 Weight: 1.00 // 1 50 bmy_00388T0/1-395 MGDPFIRHIA LLGFEKRFVP SQHYVYVFLV KWQDLSEKVV YRRFTEIYEF ENSTTRP00000014911/1-340 ---------- ---------- ---------- ---------- ---------- ENSP00000289473/1-390 MGDTFIRHIA LLGFEKRFVP SQHYVYMFLV KWQDLSEKVV YRRFTEIYEF ENSBTAP00000004279/1-392 MGDHFIRHIA LLGFEKRFVP SQHYVYMFLV KWQDLSEKVV YRRFTEIYEF 51 100 bmy_00388T0/1-395 H----EMFPI EAGDITPENR IIPHLPAPRW FDGQRVAESR QGTLTEYCNS ENSTTRP00000014911/1-340 -KTLKEMFPI EAGDIKSENR IIPHLPAPRW FDGQRVAESR QGTLTEYCNS ENSP00000289473/1-390 HKTLKEMFPI EAGAINPENR IIPHLPAPKW FDGQRAAENR QGTLTEYCGT ENSBTAP00000004279/1-392 HKILKEMFPI EAGDINPENR IIPHLPAPRW YDGQRVAESR QGTLTEYCST 101 150 bmy_00388T0/1-395 LMNLPGKISR CPHLLNFFKV RPDDLKLPTD SQVKKPETYL MPRDGKSNAA ENSTTRP00000014911/1-340 LMNLPVKISR CSHLLNFFKV RPDDLKLPTD SQVKKPETYL MPRDGKSNAA ENSP00000289473/1-390 LMSLPTKISR CPHLLDFFKV RPDDLKLPTD NQTKKPETYL MPKDGKSTAT ENSBTAP00000004279/1-392 LMSLPVKISR CPHLLNFFKV RPDDLKLPTD SQVKKPETYL MPKDGKNNAA 151 200 bmy_00388T0/1-395 DITGPIILQT YRAIADYEKS SGSEMALATG DVVDVVEKSQ SGWWFCQMKT ENSTTRP00000014911/1-340 DITGPIILQT YRAIADYEKS SGSEMALATG DVVDVVEKSQ SGWWFCQMKT ENSP00000289473/1-390 DITGPIILQT YRAIANYEKT SGSEMALSTG DVVEVVEKSE SGWWFCQMKA ENSBTAP00000004279/1-392 DITGPIILQT YRAIADYEKG SSSQMALATG DVVDVVEKNE SGWWFCQMKT 201 250 bmy_00388T0/1-395 KRGWVPASYL EPLDSPEEAE DPEPNYAGEP YVTIKAYTAL LEDEMSLEQG ENSTTRP00000014911/1-340 KRGWVPASYL EPLDSPDEAE DPEPNYEGEP YITIEAYTAV LEDEISLEQG ENSP00000289473/1-390 KRGWIPASFL EPLDSPDETE DPEPNYAGEP YVAIKAYTAV EGDEVSLLEG ENSBTAP00000004279/1-392 KRGWVPASYL EPLDSPDEAE DPEPNYAGEP YITIKAYTAV LEDEISLEEG 251 300 bmy_00388T0/1-395 ETIEERRCHR LLP--IHVPA TGRAGHRPGP KPDQEGSAAP QVVHPQRAQH ENSTTRP00000014911/1-340 ETIEV--IHK LLDGWWVIRK EDVTGYFPSM YLQQAGQDTD QAQSRIK-RG ENSP00000289473/1-390 EAVEV--IHK LLDGWWVIRK DDVTGYFPSM YLQKSGQDVS QAQRQIK-RG ENSBTAP00000004279/1-392 EAIEV--IHK LLDGWWVIRK EDVTGYFPSM YLQKAGQDVA QAKSQIKSRG 301 350 bmy_00388T0/1-395 PPTVTEAPQP GHLSAQQCPF FAAAPPPGAA GAPEPKEPAD EERWGRAGGA ENSTTRP00000014911/1-340 APPRXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX X-XXXX---- ENSP00000289473/1-390 APPRRSSIRN AHSIHQRSRK RLSQDAYRRN SVRFLQQRRR QARPGP---- ENSBTAP00000004279/1-392 APPRRSSIRN AHSIHQRSRK RLSQDTYRRN SVRFMQQRRH Q-RPEP---- 351 400 bmy_00388T0/1-395 GLSWPCPPGE EEEPPKTERP KPQPAVPPRP SADLILHRCS ESTKRKLASS ENSTTRP00000014911/1-340 --XXXXXXXX XEESLKTERP KPQPAVPPRP SSDLILHRCS ESTKRKLASA ENSP00000289473/1-390 --QSPGSPLE EERQ--TQRS KPQPAVPPRP SADLILNRCS ESTKRKLASA ENSBTAP00000004279/1-392 --QRSRSALR EQQQPKTERP KPQPAVPPRP SADLILHRCS ESTKRKLASA 401 450 bmy_00388T0/1-395 V ENSTTRP00000014911/1-340 V ENSP00000289473/1-390 V ENSBTAP00000004279/1-392 V