KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:23:31 2014 Check: 00 .. Name: ENSP00000387262/1-758 Len: 766 Check: 8103 Weight: 1.00 Name: ENSBTAP00000004280/1-749 Len: 766 Check: 2029 Weight: 1.00 Name: bmy_17876T0/1-382 Len: 766 Check: 5652 Weight: 1.00 Name: ENSTTRP00000008157/1-759 Len: 766 Check: 9893 Weight: 1.00 Name: BACU005897/1-701 Len: 766 Check: 1673 Weight: 1.00 // 1 50 ENSP00000387262/1-758 MLRACQLSGV TAAAQSCLCG KFVLRPLRPC RRYSTSGSSG LTTGKIAGAG ENSBTAP00000004280/1-749 MLRACQLSGV TSTAQNCLCG KFVLRPLRPC RRYSTSGSSR LSASKIAGAG bmy_17876T0/1-382 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000008157/1-759 MLRACQLSGV TSTAQSCLCG KFVLRPLRPC RRYSTPGGSR LSPSKVAGAG BACU005897/1-701 ---------- -----SCLCG KFVLRPLRPC RRYSTPGSSR LSPSKIAGAG 51 100 ENSP00000387262/1-758 LLFVGGGIGG TILYAKWDSH FRESVEKTIP YSDKLFEMVL GPAAYNVPLP ENSBTAP00000004280/1-749 ILFVGGGIGG TILYAKWDSH FRKNVEKTIP YSDKLFEMVL GSPPYTVPLP bmy_17876T0/1-382 ---------- ---------- ---------- ----MYDF-- ---------- ENSTTRP00000008157/1-759 ILFVGGGIGG TILYAKWDSH FRKNVEKTIP YSDKLFEMVL GSPPYTVPLP BACU005897/1-701 ILFVGGGIGG TILYAKWDSQ FRKNVEKTIP YSDKLFEMVL GSPPYTVPSP 101 150 ENSP00000387262/1-758 KKSIQSGPLK ISSVSEVMKE SKQPASQLQK QKGDTPASAT -APTEAAQII ENSBTAP00000004280/1-749 KKPIQSGPLK ISSVSEVMKE SKQPASQPQK QKGDTSASTT ---------- bmy_17876T0/1-382 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000008157/1-759 KKPIQSGPLK TSSVSEAMKE SKQPASQLQK QKGDASASTT XXXXXXXXXX BACU005897/1-701 KKPIQSGPLK ISSVSEAMEE SKQPASQLQK QKGDTSASTT ---------- 151 200 ENSP00000387262/1-758 SAAGDTLSVP APAVQPEESL KTDHPEIGEG KPTPALSEEA SSSSIRERPP ENSBTAP00000004280/1-749 --AGDTLSVP APVVQHEELI KTDHPETGEG KPKPATSEEA SSTSVRERPP bmy_17876T0/1-382 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000008157/1-759 XXXXXXMSVP APLVQHEEST ETDHSETGEG KPKPATSEEA SSTSVRERPP BACU005897/1-701 ---------- ---------- ---------- ---VLLQEEA SSTSVRERPP 201 250 ENSP00000387262/1-758 EEVAARLAQQ EKQEQVKIES LAKSLEDALR QTASVTLQAI AAQNAAVQAV ENSBTAP00000004280/1-749 EEVAARLAQQ EKQEQVKIES LAKSLEDALS QTARITQQAI VAQNAAVQAV bmy_17876T0/1-382 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000008157/1-759 EEVAARLAQQ EKQEQVKIES LAKSLEDALS QTAYITQQAI VAQNAAVQAV BACU005897/1-701 EEVAARLAQQ EKQEQVKIES LAKSLEDALS QTACTTQQAI VAQNAAVQAV 251 300 ENSP00000387262/1-758 NAHSNILKAA MDNSEIAGEK KSAQWRTVEG ALKERRKAVD EAADALLKAK ENSBTAP00000004280/1-749 TAHANILKAA MDDSEIAGDK KSAQWRTVEG ALKERRKAVD EAADALLKAK bmy_17876T0/1-382 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000008157/1-759 TAHANILKTA MDDSEIAGDK KSAQWRTVEG ALKERRKAVD EAADALLKAK BACU005897/1-701 TAHANILKTA MDDSEIAGDK KSAQWRTVEG ALKERRKAVD EAADALLKAK 301 350 ENSP00000387262/1-758 EELEKMKSVI ENAKKKEVAG AKPHITAAEG KLHNMIVDLD NVVKKVQAAQ ENSBTAP00000004280/1-749 EELEKMKSVI ENAKKEEVAG AKSHITAAEG KLHNMIIDLD NVVQKVQAAQ bmy_17876T0/1-382 ---------- ---------- ---------G EIINIFT--- ---------- ENSTTRP00000008157/1-759 EELEKMKSVI ENAKKEEVAG AKSYITAAEG KLHNMIVDLD NVVQKVKAAQ BACU005897/1-701 EELEKMKSVI EDAKKEEVAG AKSYITAAEG KLHNMIVDLD NVVQKVKAAQ 351 400 ENSP00000387262/1-758 SEAKVVSQYH ELVVQARDDF KRELDSITPE VLPGWKGMSV SDLADKLSTD ENSBTAP00000004280/1-749 SEAKVVSQYH ELVVQAREDF KRELDSITPE VLPGWKGM-- ---TDKLSAD bmy_17876T0/1-382 ---------- ---------- ---------- ----W----- FCLADRLSAD ENSTTRP00000008157/1-759 SEAKVVSQYH ELVVQARDDF KRELDSITPE VLPGWKGMSK YNLADRLSPD BACU005897/1-701 SEAKVVSQYH ELVVQARDDF KRELDSITPE VLPGWKGMSI SDLADKLSAD 401 450 ENSP00000387262/1-758 DLNSLIAHAH RRIDQLNREL AEQKATEKQH ITLALEKQKL EEKRAFDSAV ENSBTAP00000004280/1-749 DLNALIAHAH RRIDQLNRAL AEQKATEKQH IALALEKQKL EEKRAFDSAV bmy_17876T0/1-382 DLNSLIAHAH RRIDQLNKAL AEQKATEKQH IALALEKQKL EEKRAFDSAV ENSTTRP00000008157/1-759 DLNSLIAHAH RRIDQLNRAL AEQKATEKQH IALALEKQKL EEKRAFDSAV BACU005897/1-701 DLNSLIAHAH RRIDQLNKAL AEQKATEKQH IALALEKQKL EEKRAFDSAV 451 500 ENSP00000387262/1-758 AKALEHHRSE IQAEQDRKIE EVRDAMENEM RTQLRRQAAA HTDHLRDVLR ENSBTAP00000004280/1-749 AKALEHHRSE IQAEQDRKVE EVRDAMENEM RTQLRRQAAA HTDHLRDVLR bmy_17876T0/1-382 AKALEHHRSE IQAEQDRKVE EVRDAMENEM RTQLRRQAAA HTDHLRDVLR ENSTTRP00000008157/1-759 AKALEHHRSE IQAEQDRKVE EVRDAMENEM RTQLRRQAAA HTDHLRDVLR BACU005897/1-701 AKALEHHRSE IQAEQDRKVE EVRDAMENEM RTQLRRQAAA HTDHLRDVLR 501 550 ENSP00000387262/1-758 VQEQELKSEF EQNLSEKLSE QELQFRRLSQ EQVDNFTLDI NTAYARLRGI ENSBTAP00000004280/1-749 VQEQELKYEF EQDLSEKLAE QELQFRRLSQ EQVDNFTLDI NTAYARLRGI bmy_17876T0/1-382 VQEQELKYEF EQDLSEKLAE QELQFRRLSQ EQVDNYTLDI NTAYARLRGI ENSTTRP00000008157/1-759 VQEQELKYEF EQDLSEKLAE QELQFRRLSQ EQVDNYTLDI NTAYARLRGI BACU005897/1-701 VQEQELKYEF EQDLSEKLAE QELQFRRLSQ EQVDNYTLDI NTAYARLRGI 551 600 ENSP00000387262/1-758 EQAVQSHAVA EEEARKAHQL WLSVEALKYS MKTSSAETPT IPLGSAVEAI ENSBTAP00000004280/1-749 EQAVQSHAVA EEEARKVHQL WLSVEALRYR MKTASADLPT VPLGSAVEAI bmy_17876T0/1-382 EQAVQSHAVA EEEARKAHQL WLSVEALKYR MKTASADLPT VPLGSAVEAI ENSTTRP00000008157/1-759 EQAVQSHAVA EEEARKAHQL WLSVEALKYR MKTASADLPT VPLGSAVEAI BACU005897/1-701 EQAVQSHAVA EEEARKAHQL WLSVEALKYR MKTASADLPT VPLGSAVEAI 601 650 ENSP00000387262/1-758 KANCSDNEFT QALTAAIPPE SLTRGVYSEE TLRARFYAVQ KLARRVAMID ENSBTAP00000004280/1-749 RASCSDSEFA QALTAALPPE SLTRGVYSEE TLRVRFYAVQ KLARRVAMID bmy_17876T0/1-382 RVNCSDSEFA QALSAALPPE SLTRGVYSEE TLRVRFYAIQ KLAHRVAMID ENSTTRP00000008157/1-759 RVSCSDSEFA QALSAALPPE SLTRGVYSEE TLRVRFYAIQ KLAHRVAMID BACU005897/1-701 RVNCSDSEFA QALSAALPPE SLTRGVYSEE TLRVRFYAIQ KLAHRVAMID 651 700 ENSP00000387262/1-758 ETRNSLYQYF LSYLQSLLLF PPQQLKPPPE LCPEDINTFK LLSYASYCIE ENSBTAP00000004280/1-749 ETRNSLYQYF LSYLQSLLLF PPQQLKPPAE LCPEDADTFT LLSYASYCLE bmy_17876T0/1-382 ETRNSLYQYF LSYLQSLLLF PPQQLKPPAE LCPEDTNTFK LLSYASYCIE ENSTTRP00000008157/1-759 ETRNSLYQYF LSYLQSLLLF PPKQLKPPAE LCPEDTNTFK LLSYASYCIE BACU005897/1-701 ETRNSLYQYF LSYIQSLLLF PPQQLKPPAE LCPEDTNTFK LLSYASYCIE 701 750 ENSP00000387262/1-758 HGDLELAAKF VNQLKGESRR VAQDWLKEAR MTLETKQIVE ILTAYASAVG ENSBTAP00000004280/1-749 HGDLELAAKF VNQLKGESRR AAQGWLKEAR VTLETRQIVE ILTAYASAVG bmy_17876T0/1-382 HGDLELAAKF VNQLKGEPRR VAQDWLKEAR MTLETKQIVE ILTAYASAVG ENSTTRP00000008157/1-759 HGDLELAAKF VNQLKGESRR VAQDWLKEAR MTLETKQIVE ILTAYASAVG BACU005897/1-701 HGDLELAAKF VNQLKGESRR VAQDWLKEAR MTLETKQIVE ILTAYASAVG 751 800 ENSP00000387262/1-758 IGTTQVQPE- ------ ENSBTAP00000004280/1-749 IGTTQVQQQE GLGRVP bmy_17876T0/1-382 IGTTQVQQE- ------ ENSTTRP00000008157/1-759 IGTTQVQQE- ------ BACU005897/1-701 VGTTQVQQE- ------