KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:23:33 2014 Check: 00 .. Name: ENSTTRP00000004709/1-1205 Len: 1499 Check: 3980 Weight: 1.00 Name: ENSP00000397351/1-1211 Len: 1499 Check: 3980 Weight: 1.00 Name: ENSBTAP00000004281/1-1210 Len: 1499 Check: 4052 Weight: 1.00 Name: bmy_19183T0/1-881 Len: 1499 Check: 7624 Weight: 1.00 Name: BACU012131/1-1370 Len: 1499 Check: 5793 Weight: 1.00 // 1 50 ENSTTRP00000004709/1-1205 ---------- ---------- ---------- ---------- ---------- ENSP00000397351/1-1211 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000004281/1-1210 ---------- ---------- ---------- ---------- ---------- bmy_19183T0/1-881 MQVGESGTTG SKSSDNILRT HSPHGGREEE VETQTSTGLE SLSGMQPSVQ BACU012131/1-1370 ---------- ---------- ---------- ---------- ----MQPSVQ 51 100 ENSTTRP00000004709/1-1205 ---------- --MPATNQGW PEDFGFRLGG SGPCFVLEVA EGSSAHTGGL ENSP00000397351/1-1211 -------MAT TATPATNQGW PEDFGFRLGG SGPCFVLEVA KGSSAHAGGL ENSBTAP00000004281/1-1210 ---------- --MPATNQGW PEDFGFRLGG SGPCFVLDVV EGSSAHAGGL bmy_19183T0/1-881 SLFLSSCSDT TAMPATNQGW PEDFGFRLGG SGPCFVLEVA EGSSAHTGGL BACU012131/1-1370 SLLLSSCSDT TAMPATNQGW PEDFGFRLGG SGPCFVLEVV EGSSAHTGGL 101 150 ENSTTRP00000004709/1-1205 RPGDQILEVE GLAVGGLSRE RLVRLARRCP RVPPSLGVLP GPDGGPSAGS ENSP00000397351/1-1211 RPGDQILEVE GLAVGGLSRE RLVRLARRCP RVPPSLGVLP APDGGPGPGS ENSBTAP00000004281/1-1210 RPGDQILEVE GLAVAGLSRE RLVRLARRCP RVPPSLGVLP GPIGGPGAGS bmy_19183T0/1-881 RPGDQILEVE GLAVGGLSRE RLVRLARRCP RVPPSLGVLS GPDGGPGAGS BACU012131/1-1370 RPGDQILEVE GLAVGGLSRE RLVRLARRCP RVPPSLGVLP GSDGGPGAGS 151 200 ENSTTRP00000004709/1-1205 GCAPLTTASR APRSGRGLSL GRELLRLAGR KRPDAVHRER RRKAQEFSRK ENSP00000397351/1-1211 GPAAPTTVLR APRCGRGLAL GRELLRLAGR KRPDAVHRER RRKAQEFSRK ENSBTAP00000004281/1-1210 GCEPLTTALR IQRSSRGLYL GRELLRLAGR KRPDAVHRER RRKAQEFSRK bmy_19183T0/1-881 GCAPLTTASR APRSSRGLSL GRELLPLTGR KRPDAVHRER RRKAQEFSRK BACU012131/1-1370 GCAPLTTVSR APRSGRGLSL GRELLRLTGR KRPDAVHRER RRKAQEFSRK 201 250 ENSTTRP00000004709/1-1205 VDEILGDQPM TKEQMFAALK QFAAEQRVDE LVWALTLVLP LEARGPLLEN ENSP00000397351/1-1211 VDEILGDQPT AKEQVFAALK QFAAEQRVDD LVWTLTLALP REACGPLLDN ENSBTAP00000004281/1-1210 VDETLGDQPT AKEQVFAALK QFAAEQRVDE LVWALTLALP TEARGPLLEN bmy_19183T0/1-881 VDEILGDQPM TKERVFAALK QFAAEQRVDE LVWALTLVLP LEAHGPLLEN BACU012131/1-1370 VDEILGDQPM TKERVFAALK QFAAEQRVDE LVWALTLVLP LEARGPLLEN 251 300 ENSTTRP00000004709/1-1205 LRI-IPKKHR ARFDEVVSQG LLGKLCRARR AQGAQRLRRS RSEERPERLL ENSP00000397351/1-1211 LRIFIPKKHR ARFDEVVSQG LLGKLCRARR AQGAQRLRRS RSEERPERLL ENSBTAP00000004281/1-1210 LRYLFRVWHR GQFDEVISQG VRGLLCRARR TQGAQRLRRS RSEERPERLL bmy_19183T0/1-881 LRIFIPKKHR ARFDEVVSQG LLGKLCRARR AQGAQRLRRS RSEERPERLL BACU012131/1-1370 L--------- ---------- ---------- ---------- ---------- 301 350 ENSTTRP00000004709/1-1205 VSTRASAAPR RPDEPPQRKA ASLLGSRAGP GGARRTVRVY KGNKSFGFTL ENSP00000397351/1-1211 VSTRASAPPR RPDEPPPRRA SLLVGGLAGP GGARRTVRVY KGNKSFGFTL ENSBTAP00000004281/1-1210 VSTRASAAPR RPDEPPPRKA ASLLGGRAGP GGARRTVRVY KGNKSFGFTL bmy_19183T0/1-881 VSTRASAAPR RPDEPPQRKA ASLLGSRAGP GGARRTVRVY KGNKSFGFTL BACU012131/1-1370 ---------- ---------- ---------- ----RTVRVY KGNKSFGFTL 351 400 ENSTTRP00000004709/1-1205 RGHGPVWIES VVPGSPADNA SLKSGDRILF LNGLDMRNCS HDKVVSMLQG ENSP00000397351/1-1211 RGHGPVWIES VLPGSPADNA ALKSGDRILF LNGLDMRNCS HDKVVSMLQG ENSBTAP00000004281/1-1210 RGHGPVWIES VLPGSPADNA SLKSGDQILF LNGLDMRNCS HDKVVSMLQG bmy_19183T0/1-881 RGHGPVWIES VLPGSPADNA SLKSGDRILF LNGLDMRNCS HDKVVSMLQG BACU012131/1-1370 RGHGPVWIES VLPGSPADNA SLKSGDRILF LNGLDMRNCS HDKVVSMLQG 401 450 ENSTTRP00000004709/1-1205 SGAMPTLVVE EGLVPFASDS DSMDSPNPSS ALTSLQWVAE ILPSSIRVQG ENSP00000397351/1-1211 SGAMPTLVVE EGLVPFASDS DSLDSPNPSS ALTSLQWVAE ILPSSIRVQG ENSBTAP00000004281/1-1210 SGAMPTLVVE EGLVPFASDS DSMDSPNPSS ALTSLQWVAE ILPSSIRVQG bmy_19183T0/1-881 SGAMPTLVVE EGLVPFASDS DSMDSPNPSS ALTSLQWVAE ILPSSIRVQG BACU012131/1-1370 SGAMPTLVVE EGLVPFASDS DSMDSPNPSS ALTSLQWVAE ILPSSIRVQG 451 500 ENSTTRP00000004709/1-1205 RTFSQQLEHL LTPPERYGVC RALESFFQHX XXXXXXXXXX XXXXXXXXXX ENSP00000397351/1-1211 RTFSQQLEHL LTPPERYGVC RALESFFQHR NIDTLIVDVY PVLDTPAKQV ENSBTAP00000004281/1-1210 RTFSQQLEHL LTPPERYGVC RALESFFQHR NIDTLIVDVY PVLDTPAKQV bmy_19183T0/1-881 RTFSQQLEHL LTPPEHYGVC RALESFFQHR NIDTLIVDVY PVLDTPAKQV BACU012131/1-1370 RTFSQQLEHL LTPPERYGVC RALESFFQHR NIDTLIVDVY PVLDTPAKQV 501 550 ENSTTRP00000004709/1-1205 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXEP------ EPEPELEPEP ENSP00000397351/1-1211 LWQFIYQLLT YEEQELCQEK IACFLGYTAM TAEP------ EPELDLESEP ENSBTAP00000004281/1-1210 LWQFIYQLLT YEEQELCQEK IACFLGYTAM TAEPEP---- EPEPELEPEP bmy_19183T0/1-881 LWQFIYQLLT YEEQELCQEK IACFLGYTAM TAEPESTLDL EPEPEPEPEP BACU012131/1-1370 LWQFIYQLLT YEEQELCQEK IACFLGYTAM TAEPGSTLDL EPEPEPEPEP 551 600 ENSTTRP00000004709/1-1205 EPEPQPRSSL RASSMCRRSL RSQGLEASLS C--------- -GPSDCAEMP ENSP00000397351/1-1211 TPEPQPRSSL RASSMCRRSL RSQGLEAGLS C--------- -GPSECPEMP ENSBTAP00000004281/1-1210 APEPQMRSSL RASSMCRRSL RSQGLEAGLG C--------- -GPSDCPEMP bmy_19183T0/1-881 EPEPQPRSSL RASSMCRRSL RSQGLEASLS CGEALDQKPG VGPSDCPEMP BACU012131/1-1370 EPEPQPRSSL RASSVCRRSL RSQGLEASLS CGEAPDQKSG VGPRDCPEMP 601 650 ENSTTRP00000004709/1-1205 RPLIPGERQA GDGTSLPETP NPKMMSAVYA ELESRLSSSF KGKMGTTSRS ENSP00000397351/1-1211 LPLIPGERQA GDGTSLPETP NPKMMSAVYA ELESRLNSSF KGKMGTVSKS ENSBTAP00000004281/1-1210 LPPIPGERQA GDGTSLPETP NPKMMSAVYA ELESRLSSSF KGKMGTSSRA bmy_19183T0/1-881 LPLIPGERQA GDGTSLPETP NPKMMSAVYA ELESRLSSSF KGKMGTTSRS BACU012131/1-1370 LPLIPGERQA GDGTSLPETP NPKMMSAVYA ELESRLSSSF KGKMGTTSRS 651 700 ENSTTRP00000004709/1-1205 RASPPVPSMA GTEXXXXXXX XXXXXXRLLP SPCYYPLCSE GLASPSSCES ENSP00000397351/1-1211 RASPPGPSPA VTTGPRTLSG VSWPSERLLP SPCYHPLCSG GLASPSSSES ENSBTAP00000004281/1-1210 RASPPLPSAA GPAGPRTRSS ISWPSEQLLP SPCYYPLCSE GLASPSSSES bmy_19183T0/1-881 RASPPVPSTA GTAGPRTLSS VSWPSERLLP SPCYYPLCSE GLASPSSCES BACU012131/1-1370 RASPPVPSTA GTAGPRTLSS VSWPSERLLP SPCYYPLCSE GLASPSSCES 701 750 ENSTTRP00000004709/1-1205 HPYASLDSSR APSPQLGPGP LRSSSTPSPD PG-RPPSRRK LFTFAHPVPS ENSP00000397351/1-1211 HPYASLDSSR APSPQPGPGP ICPDSPPSPD PT-RPPSRRK LFTFSHPVRS ENSBTAP00000004281/1-1210 HPYASLDSSR APSPQPGPGP VCAESPPSPD PSRRPSSRRK LFAFSRPVRS bmy_19183T0/1-881 HPYASLDSSR APSPQLGPGP LRSSSTPSPD PG-RPPSRRK LFTFARPVPS BACU012131/1-1370 HPYASLDSSR APSPQLGPGP LRSSSTPSPD PG-RPPSRRK LFTFARPVPS 751 800 ENSTTRP00000004709/1-1205 RDTDRFLDAL SEQLGPRVTI VDDFLSPEND YEEMSFHDDQ GSFVTNERSS ENSP00000397351/1-1211 RDTDRFLDVL SEQLGPRVTI VDDFLTPEND YEEMSFHDDQ GSFVTNERSS ENSBTAP00000004281/1-1210 RDTDRFLDAL SEQLGPRVTI VEDFLSPEND YEEMSFHDDQ GSFITNERSS bmy_19183T0/1-881 RDTDRFLDAL SEQLGPRVTI VDDFLSPEND YEE------- ---------- BACU012131/1-1370 RDTDRFLDAL SEQLGPRVTI VDDFLSPEND YEEMSFHDDQ GSFVTNERSS 801 850 ENSTTRP00000004709/1-1205 ASECISSSEE GSSLTYSSIS DHIPPPPLSP PPPPPLPFHD PKP-SSRTPD ENSP00000397351/1-1211 ASDCISSSEE GSSLTYSSIS DHIPPPPLSP PPPPPLPFHD AKP-SSRSSD ENSBTAP00000004281/1-1210 ASECISSSEE GSSLTYSSLS DHIPPPPLSP PPPPPLPFHD PKPSSSRTPD bmy_19183T0/1-881 ---------- ---------- ---------- ---------- ---------- BACU012131/1-1370 ASECVSSSEE GSSLTYSSIS DHIPPPPISP PPPPPLPFHD PKP-SSRTPD 851 900 ENSTTRP00000004709/1-1205 GPWGPAPTLA ---------- ---------- ---------- -----KPLTQ ENSP00000397351/1-1211 GSRGPAQALA ---------- ---------- ---------- -----KPLTQ ENSBTAP00000004281/1-1210 GPRGPTPALP ---------- ---------- ---------- -----KPLAQ bmy_19183T0/1-881 ---------- ---------- ---------- ---------- ---------- BACU012131/1-1370 GPWGPAPTLA XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX 901 950 ENSTTRP00000004709/1-1205 LSHPVPPPPP PPLPPPVPCA PPMLSRGLGH RRSETSHMSV KRLRWEQVEN ENSP00000397351/1-1211 LSHPVPPPPP PPLPPPVPCA PPMLSRGLGH RRSETSHMSV KRLRWEQVEN ENSBTAP00000004281/1-1210 LGHPVPPPPP PPLPPPVPCA PPMLPRGLGH RRSETSHMSV KRLRWEQVEN bmy_19183T0/1-881 ---------- ---------- ---------- ---------- ---------- BACU012131/1-1370 XXXXXXXXXP PPLPPPVPCA PPMLSRGLGH RRSETSHMSV KRLRWEQVEN 951 1000 ENSTTRP00000004709/1-1205 SEGTIWGQLG EDSDYDKLSD MVKYLDLELH FGTQKPAKPV PGPEPFRKKE ENSP00000397351/1-1211 SEGTIWGQLG EDSDYDKLSD MVKYLDLELH FGTQKPAKPV PGPEPFRKKE ENSBTAP00000004281/1-1210 SEGTIWGQLG EDSDYDKLSD MVKYLDLELH FGTQKAAKPV PGPEPFRKKE bmy_19183T0/1-881 --------LG EDSDYDKLSD MVKYLDLELH FGTQKPA--- ---------- BACU012131/1-1370 SEGTIWGQLG EDSDYDKLSD MVKYLDLELH FGTQKPAKPV PGPEPFRKKE 1001 1050 ENSTTRP00000004709/1-1205 VVEILSHKKA YNTSILLAHL KLSPAELRQV LMSMEPRRLE PAHLAQLLLF ENSP00000397351/1-1211 VVEILSHKKA YNTSILLAHL KLSPAELRQV LMSMEPRRLE PAHLAQLLLF ENSBTAP00000004281/1-1210 VVEILSHKKA YNTSILLAHL KLSPAELRQV LMSMEPRRLE PAHLAQLLLF bmy_19183T0/1-881 ---------- ---TILLAHL KLSPAELRQV LMSMEPRRLE PAHLAQLLLF BACU012131/1-1370 VVEILSHKKA YNTSILLAHL KLSPAELRQV LMSMEPRRLE PAHLAQLLLF 1051 1100 ENSTTRP00000004709/1-1205 APDADEEQRY QAFREAPGRL SEPDQFVLQM LSVPEYKTRL RSLHFQATLQ ENSP00000397351/1-1211 APDADEEQRY QAFREAPGRL SEPDQFVLQM LSVPEYKTRL RSLHFQATLQ ENSBTAP00000004281/1-1210 APDADEEQRY QAYREAPGRL SEPDQFVLQM LSVPEYKTRL RSLHFQATLQ bmy_19183T0/1-881 APDADEEQRY QAFREAPGRL SEPDQFVLQ- ---------- ---------- BACU012131/1-1370 APDADEEQRY QAFREAPGRL SEPDQFVLQM LSVPEYKTRL RSLHFQATLQ 1101 1150 ENSTTRP00000004709/1-1205 EKTEEIRGSL ECLRQASLEL KNSRKLAKIL EFVLAMGNYL NDGQPQTNKT ENSP00000397351/1-1211 EKTEEIRGSL ECLRQASLEL KNSRKLAKIL EFVLAMGNYL NDGQPKTNKT ENSBTAP00000004281/1-1210 EKTEEIRGSL ECLRQASLEL KNSRKLAKIL EFVLAMGNYL NDGQPQTNKT bmy_19183T0/1-881 ---------- ---------- ---------- ---------- ---------- BACU012131/1-1370 EKTEEIRGSL ECLRQASLEL KNSRKLAKIL EFVLAMGNYL NDGQPQTNKT 1151 1200 ENSTTRP00000004709/1-1205 TGFKINFLTE LNSTKTVDGK STFLHILAKS LSQHFPELLG FAQDLPTVPL ENSP00000397351/1-1211 TGFKINFLTE LNSTKTVDGK STFLHILAKS LSQHFPELLG FAQDLPTVPL ENSBTAP00000004281/1-1210 TGFKINFLTE LNSTKTVDGK STFLHILAKS LSQHFPELLG FAQDLPTVPL bmy_19183T0/1-881 ---------- ---------- ---------- ---------- ---------- BACU012131/1-1370 TGFKINFLTE LNSTKTVDGK STFLHILAKS LSQHFPELLG FAQDLPTVPL 1201 1250 ENSTTRP00000004709/1-1205 AAKVNQRALT SDLADLHGTI SEIQAACQSM SPTSEDKFAV VMA------- ENSP00000397351/1-1211 AAKVNQRALT SDLADLHGTI SEIQDACQSI SPSSEDKFAM VMS------- ENSBTAP00000004281/1-1210 AAKVNQRALT NDLADLHGTI SEIQAACQSM SPSSEDKFAV VMA------- bmy_19183T0/1-881 ---------- ---------- ---------- ---------- ---------- BACU012131/1-1370 AAKVNQRALT GDLADLHGTI SEIQAACQSV SPASEDKFAV VMAVSCPSAT 1251 1300 ENSTTRP00000004709/1-1205 -------SFL ETAQPVLRAL DGLQREAMEQ LGKALAFFGE DSKATTSEAF ENSP00000397351/1-1211 -------SFL ETAQPALRAL DGLQREAMEE LGKALAFFGE DSKATTSEAF ENSBTAP00000004281/1-1210 -------SFL ETAQPLLRAL DGLQREAMEE LGKALAFFGE DSKATTSEAF bmy_19183T0/1-881 ---------- ---------- ---------- ---------- ---------- BACU012131/1-1370 VDPEAHQSFL ETAQPVLRAL DGLQREAMDE LGKALAFFGE DSKATTSEAF 1301 1350 ENSTTRP00000004709/1-1205 FGIFAEFMSK FERALGDLQA G--------- ---------- ---------- ENSP00000397351/1-1211 FGIFAEFMSK FERALSDLQA G--------- ---------- ---------- ENSBTAP00000004281/1-1210 FGIFAEFMSK FERALGDLQA A--------- ---------- ---------- bmy_19183T0/1-881 ---------- ---------- ---------- ---------- ---------- BACU012131/1-1370 FGIFAEFMSK FEGKAETGIS GKSQLLFALV FTTRYLDLFT SFISLYNTSM 1351 1400 ENSTTRP00000004709/1-1205 ---------- ---------- -------EGT RSSGMISP-- ---------- ENSP00000397351/1-1211 ---------- ---------- -------EGL RSSGMVSP-- ---------- ENSBTAP00000004281/1-1210 ---------- ---------- -------EGP RSSGMVSP-- ---------- bmy_19183T0/1-881 ---------- ---------- ---------- ---------- ---------- BACU012131/1-1370 KLIYIACSYA TVYLIYMKFK ATYDGNHDTF RVEFLVVPVG GLSFLVNHDF 1401 1450 ENSTTRP00000004709/1-1205 ----LSW--- ---------- ---------- ---------- ---------- ENSP00000397351/1-1211 ----LAW--- ---------- ---------- ---------- ---------- ENSBTAP00000004281/1-1210 ----LAW--- ---------- ---------- ---------- ---------- bmy_19183T0/1-881 ----VLWP-- ---------- ---------- ---------- ---------- BACU012131/1-1370 SPLEILWTFS IYLESVAILP QLFMISKTGE AETITTHYLF FLGLYRALYL 1451 1500 ENSTTRP00000004709/1-1205 ---------- ---------- ---------- ---------- --------- ENSP00000397351/1-1211 ---------- ---------- ---------- ---------- --------- ENSBTAP00000004281/1-1210 ---------- ---------- ---------- ---------- --------- bmy_19183T0/1-881 ---------- ---------- ---------- ---------- --------- BACU012131/1-1370 VNWIWRFYFE GFFDLIAVVA GVVQTILYCD FFYLYITKVL KGKKLSLPA