KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:23:35 2014 Check: 00 .. Name: ENSP00000297990/1-1146 Len: 1222 Check: 7275 Weight: 1.00 Name: ENSTTRP00000010035/1-1132 Len: 1222 Check: 3922 Weight: 1.00 Name: ENSBTAP00000004312/1-1146 Len: 1222 Check: 4025 Weight: 1.00 Name: bmy_05681T0/1-1173 Len: 1222 Check: 7005 Weight: 1.00 Name: BACU006658/1-1143 Len: 1222 Check: 1571 Weight: 1.00 // 1 50 ENSP00000297990/1-1146 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000010035/1-1132 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000004312/1-1146 ---------- ---------- ---------- ---------- ---------- bmy_05681T0/1-1173 MGRREGKDRP PLFPYTLGWG NKTKTALLLR LASALRSKAV ALGCITAAVW BACU006658/1-1143 ---------- ---------- ---------- ---------- ---------- 51 100 ENSP00000297990/1-1146 ---------- ---------- ------MGPA PAGEQLRGAT GEPEVMEPAL ENSTTRP00000010035/1-1132 ---------- ---------- ---------- --GKKLCRAS GKPGVMASAL ENSBTAP00000004312/1-1146 ---------- ---------- ------MGPA PARAEHRGTA GEPEVMESAL bmy_05681T0/1-1173 AFLSTWEEVV QSKWTLNPKC GSSTGGMGPA HAGAQHRGTA GDPEAMASAL BACU006658/1-1143 ---------- ---------- -------MRE RSIAELLGS- -RRWVMASAL 101 150 ENSP00000297990/1-1146 EGTGKEGKKA SSRKRTLAEP PAKGLLQPVK LSRAELYKEP TNEELNRLRE ENSTTRP00000010035/1-1132 EGIGKEGKKE SSKKRS--GS PVEGLLQPVK LSRAELYKEP TNEELNRLRE ENSBTAP00000004312/1-1146 EGTGKEGKKE SLKKRKMAGS PGEGLLQPVK LSRAELYKEP TNEELSRLRE bmy_05681T0/1-1173 EGTGKEGKKE SSKKRSVAGS PVEGLLQPVK LSRAELYKEP TNEELNRLRE BACU006658/1-1143 EGTGKEGKKE SSKKRSVAGS PAEGLLQPVK LSRAELYKEP TNEELNRLRE 151 200 ENSP00000297990/1-1146 TEILFHSSLL RLQVEELLKE VRLSEKKKDR IDAFLREVNQ RVVRVPSVPE ENSTTRP00000010035/1-1132 TESLFHSSLL RLQVEELLKE VRLSEKKKER IDAFLQKVNQ RIMRVPSTPE ENSBTAP00000004312/1-1146 TESLFHSSLL RLQVEELLKE VRLSEKKKER IDAFLREVNQ RIMRVPSTPE bmy_05681T0/1-1173 TESLFHSSLL RLQVEELLKE VRLSEKKKER IDAFLRKVNQ RIMRVPSTPE BACU006658/1-1143 TESLFHSSLL RLQVEELLKE VRLSEKKKER IDAFLRKVNQ RIMRVPSTPE 201 250 ENSP00000297990/1-1146 TELTDQAWLP AGVRVPLHQV PYAVKGCFRF LPPAQVTVVG SYLLGTCIRP ENSTTRP00000010035/1-1132 TELTNQAWLR DGVRVPLHQV PYTVKGCFRF LPPAQVTVVG SYLLGTCIRP ENSBTAP00000004312/1-1146 TELTNQAWLP DGVQVPIHQV PYTVKGRFHF LPPAQVTVVG SYLLGTCIRP bmy_05681T0/1-1173 TE-------- ---------- ---------- -----VTVVG SYLLGTCIRP BACU006658/1-1143 TELTNQAWLR GGVRVPLHQV PYTVKGCFRF LPPAQVTVVG SYLLGTCIRP 251 300 ENSP00000297990/1-1146 DINVDVALTM PREILQDKDG LNQRYFRKRA LYLAHLAHHL AQDPLFGSVC ENSTTRP00000010035/1-1132 DINVDVALTM PREILQDKDG LNQRYFRKRA LYLAHLAHHL SQDPLFGSVR ENSBTAP00000004312/1-1146 DINVDVALTI PREILQDKDG LNQRYFRKRA LYLAHVAHHL AKDPLFGSVR bmy_05681T0/1-1173 DINVDVALTM PREILQDKDG LNQRYFRKRA LYLAHLAHHL SQDPLFGSVR BACU006658/1-1143 DINVDVALTM PREILQDKDG LNQRYFRKRA LYLAHLAHHL SQDPLFGSVR 301 350 ENSP00000297990/1-1146 FSYTNGCHLK PSLLLRPRGK DERLVTVRLH PCPPPDFFRP CRLLPTKNNV ENSTTRP00000010035/1-1132 FSYTNGCHLK PSLLLRPHGK DERLVTVRLH PCPPPDFFRP CRLLPSKNNV ENSBTAP00000004312/1-1146 FSYTNGCHLK PSLLLRPHGK DERLVTVRLH PCPPPDFFRP CRLLPSKSNV bmy_05681T0/1-1173 FSYTNGCHLK PSLLLRPHGK DERLVTVRLH PCPPPDFFRP CRLLPFKNNV BACU006658/1-1143 FSYTNGCHLK PSLLLRPHGK DERLVTVRLH PCPPPDFFRP CRLLPSKNNV 351 400 ENSP00000297990/1-1146 RSAWYRGQSP AGDGSPEPPT PRYNTWVLQD TVLESHLQLL STILSSAQGL ENSTTRP00000010035/1-1132 RTAWYQGQSP SGDGSPEPPT PHYNTWVLQD TALESHAQLL STVLGSASGL ENSBTAP00000004312/1-1146 RSAWYQGQSP SGDGSPEPPT PHYNTWLLQD TALESHVQLL SAVLGSASGL bmy_05681T0/1-1173 RTAWYRGQSP SGDGSPEPPT PHYNTWVLQD TALESHAQLL STVLGSASGL BACU006658/1-1143 RTAWYRGQSP SGDGSPEPPT PHYNTWVLQD TALESHAQLL STVLGSASGL 401 450 ENSP00000297990/1-1146 KDGVALLKVW LRQRELDKGQ GGFTGFLVSM LVVFLVSTRK IHTTMSGYQV ENSTTRP00000010035/1-1132 KDGVALLKVW LRQRELDKGL GGFSGFLVSM LVAFLVSTHK IHTTMSGYQV ENSBTAP00000004312/1-1146 KDGVALLKVW LRQRELDKGL GGFSGFLVSM VVAFLVSTRK IHTTMSGYQV bmy_05681T0/1-1173 KDGVALLKVW LRQRELDKGL GGFSGFLVSM LVAFLVSTHK IHTTMSGYQV BACU006658/1-1143 KDGVALLKVW LRQRELDKGL GGFSGFLVSM LVAFLVSTHK IHTTMSGYQV 451 500 ENSP00000297990/1-1146 LRSVLQFLAT TDLTVNGISL CLSSDPSLPA LADFHQAFSV VFLDSSGHLN ENSTTRP00000010035/1-1132 LRSTLQFLAS TDLTVNGISL CFSSDPSLPA LADFHQAFPV VFLDSSGRLN ENSBTAP00000004312/1-1146 LRSTLQFLAS TDLTVNGISL CFSSDPSLPA LADFHQAFPV VFLDSSGRLN bmy_05681T0/1-1173 LRSTLQFLAS TDLTVNGISL CFSSDPSLPA LADFHQAFPV VFLDSSGRLN BACU006658/1-1143 LRSTLQFLAS TDLTVNGISL CFSSDPSLPA LADFHQAFPV VFLDSSGRLN 501 550 ENSP00000297990/1-1146 LCADVTASTY HQVQHEARLS MMLLDSRADD GFHLLLMTPK PMIRAFDHVL ENSTTRP00000010035/1-1132 LCADVTASTC HQVQHEARLS MVLLDSKADD GFQLLLMTPK PMVRAFDHIL ENSBTAP00000004312/1-1146 LCADITTSTY HQVQHEARLS MALLDSKADD GFQLLLMTPK PMIRAFDHIV bmy_05681T0/1-1173 LCADVTASTC HQVQHEARLS MVLLDSKADD GFQLLLMTPK PMIRAFDHIL BACU006658/1-1143 LCADVTASTC HQVQHEARLS MVLLDSKADD GFQLLLMTPK PMIRAFDHIL 551 600 ENSP00000297990/1-1146 HLRPLSRLQA ACHRLKLWPE LQDNGGDYVS AALGPLTTLL EQGLGARLNL ENSTTRP00000010035/1-1132 HLRPLSRLQA ACHRLKLWPE LQDHGGDYVS AALGPLTTLL EQGLGSRLHL ENSBTAP00000004312/1-1146 HLRPLSRLQA ACHRLKLWPE LQDLGGDYVS AALGPLTTLL EQGLGSRVQL bmy_05681T0/1-1173 HLHPLSRLQA ACHRLKLWPE LQDHGGDYVS AALGPLTTLL EQGLGSRLHL BACU006658/1-1143 HLRPLSRLQA ACHRLKLWPE LQDHGGDYVS AALGPLTTLL EQGLGSRLHL 601 650 ENSP00000297990/1-1146 LAHSRPPVPE WDISQDPPKH KDSGTLTLGL LLRPEGLTSV LELGPEADQP ENSTTRP00000010035/1-1132 LAHSRPPVSE WDISQDPPKH RDSGVLTLGL LLRPEGLTSV LELGPEADQP ENSBTAP00000004312/1-1146 LAHSRPPVSE WDISQEPPKH RDPGVLTLGL LLRPEGLTSV LELGPEADQP bmy_05681T0/1-1173 LAHSRPPVSE WDISQDPPKH RDSGVLTLGL LLRPEGLTSV LELGPEADQP BACU006658/1-1143 LAHSRPPVSE WDISQDPPKH RDSGVLTLGL LLRPEGLTSV LELGPEADQP 651 700 ENSP00000297990/1-1146 EAAKFRQFWG SRSELRRFQD GAIREAVVWE AASMSQKRLI PHQVVTHLLA ENSTTRP00000010035/1-1132 EAADFCQFWG SRSEL-RFQD GAIREAVVWE AASMAQKRLI PHQVXXXXXX ENSBTAP00000004312/1-1146 EAADFRQFWG SRSELRRFQD GAIREAVVWE AASMAQKRLI PHQVVTHLLA bmy_05681T0/1-1173 E------FWG SRSELRRFQD GAIREAVVWE AASMAQKRLI PHQVVTHLLT BACU006658/1-1143 EAADFRQFWG SRSELRRFQD GAIREAVVWE AASMAQKRLI PHQVVTHLLT 701 750 ENSP00000297990/1-1146 LHADIPETCV HYVGGPLDAL IQGLKETSST GEEALVAAVR CYDDLSRLLW ENSTTRP00000010035/1-1132 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSBTAP00000004312/1-1146 LHADIPDTCV HYTGGLLDAL IQGLKETSST GEEALAAAVR CYDDLSRLLW bmy_05681T0/1-1173 LHADIPDTCV HYTGGLLDAL IQGLKETSST GEEALAAAVR CYDDLSRLLW BACU006658/1-1143 LHADIPDTCV HYTGGLLDAL IQGLKETSST GEEALAAAVR CYDDLSRLLW 751 800 ENSP00000297990/1-1146 GLEGLPLTVS AVQGAHPVLR YTEVFPPTPV RPAFSFYETL RERSSLLPRL ENSTTRP00000010035/1-1132 XXXXXXXXXX XXXXXXXXXX XXXVFPPTAV RPAY-FYEQL QERASLLPRR ENSBTAP00000004312/1-1146 GLDGLPLTVS AVQGAHPVLR YTEVFPPTPV RPAHSFYEQL RERASLLPRP bmy_05681T0/1-1173 GLEGLPLTVS AVQGAHPVLR YTEVFPPAAV RPAYSFYEQL RERDSLLPRP BACU006658/1-1143 GLEGLPLTVS AVQGAHPVLR YTEVFPPTAV RPAYSFYEQL RERASLLPRP 801 850 ENSP00000297990/1-1146 DKPCPAYVEP MTVVCHLEGS GQWPQDAEAV QRVRAAFQLR LAELLTQQHG ENSTTRP00000010035/1-1132 DKPCP-YVEP MTVVCHLEGS GQWPQDAEAI RRVRAAFQLR LAELLTQQHG ENSBTAP00000004312/1-1146 DKPCPAYVEP MTVVCHLEGS GQWPQDAEAI RRVRAAFQLR LAELLTQQHG bmy_05681T0/1-1173 DKPCPAYVEP MTVVCHLEGS GQWPQDAEAI RRVRAAFQLR LAELLTQQHG BACU006658/1-1143 DKPCPAYVEP MTVVCHLEGS GQWPQDAEAI RRVRAAFQLR LAELLTQQHG 851 900 ENSP00000297990/1-1146 LQCRATATHT DVLKDGFVFR IRVAYQREPQ ILKEVQSPEG MISLRDTAAS ENSTTRP00000010035/1-1132 LQCRATATHT DVLKDGFVFR IRVAYQREPQ ILRETRSPEG IISLRDTPAS ENSBTAP00000004312/1-1146 LPCRATATHT DVLKDGFVFR IRVAYQREPQ ILKETRSPAG MISLRDTPAS bmy_05681T0/1-1173 LQCRATATHT DVLKDGFVFR IRVAYQREPQ ILREMRSPEG IISLRDTPAS BACU006658/1-1143 LQCRASATHT DVLKDGFVFR IRVAYQREPQ ILREMRSPEG IISLRDTPAS 901 950 ENSP00000297990/1-1146 LRLERDTRQL PLLTSALHGL QQQHPAFSGV ARLAKRWVRA QLLGEGFADE ENSTTRP00000010035/1-1132 LRLERDTRQL PLLTSTLHGL QQQHPAFSGV ARLAKRWVRA QLLGEELTDE ENSBTAP00000004312/1-1146 LRLERDTRQL PLLTSALHGL QQQHPAFSGV ARLAKRWVRA QLLGGELTDE bmy_05681T0/1-1173 LRLERDTRQL PLLTSTLHGL QQQHSAFSGV ARLAKRWVRA QLLGEELTDE BACU006658/1-1143 LRLERDTRQL PLLTSTLHGL QQQHSAFSGV ARLAKRWVRA QLLGEELTDE 951 1000 ENSP00000297990/1-1146 SLDLVAAALF LHPEPFTPPS SPQVGFLRFL FLVSTFDWKN NPLFVNLNNE ENSTTRP00000010035/1-1132 SLDLVAAALF LHPEPFTPPS SPQVGFLRFL FLISTFDWKN NPLIVNLNNE ENSBTAP00000004312/1-1146 SLDLVAAALF LHPEPFSPPS SPQVGFLRFL FLISTFDWKN NPLIVNLNNE bmy_05681T0/1-1173 CLDLVAAALF LHPEPFTPPS SPQVGFLRFL FLISTFDWKN NPLIVNLNNE BACU006658/1-1143 CLDLVAAALF LHPEPFTPPS SPQVGFLRFL FLISTFDWKN NPLIVNLNNE 1001 1050 ENSP00000297990/1-1146 LTVEEQVEIR SGFLAARAQL PVMVIVTPQD RKNSVWTQDG PSAQILQQLV ENSTTRP00000010035/1-1132 LTAEEQVEIR SVFLATRTKL PVMVIITPQD RKSSVWTQDG PSPQILHQLM ENSBTAP00000004312/1-1146 LTVEEQVEIR SVFLATRAKL PVMVIVTPQD RKSSVWTQDG PSPQILHQLV bmy_05681T0/1-1173 LTAEEQVEIR SVFLATRTKL PVMVIITPQD RKSS------ ----ILHQLV BACU006658/1-1143 LTAEEQVEIR SVFLATRTKL PVMVIITPQD RKSSVWTQDG PSPQILHQLV 1051 1100 ENSP00000297990/1-1146 VLAAEALPML EKQLMDPRGP GDIRTVFRPP LDIYDVLIRL SPRHIPRHRQ ENSTTRP00000010035/1-1132 VLAAEALPVL EKQLMDPQGP GDIRTVFR-P LDMYDVLMHL SPRHIPRHRQ ENSBTAP00000004312/1-1146 ILAAEALPVL EKQLMDPRGP GDIRTVFRPP LDMYDVLIRL APRHIPRHRQ bmy_05681T0/1-1173 VLAAEALPVL EKQLMDPRGP GDIRTVFRPP LDMYDVLIHL SPRHIPRHRQ BACU006658/1-1143 VLAAEALPVL EKQLMDPQGP GDIRTVFRPP LDMYDVLIHL SPRHIPRHRQ 1101 1150 ENSP00000297990/1-1146 AVDSPAASFC RGLLSQPGPS SLMPVLGYDP PQLYLTQLRE AFGDLALFFY ENSTTRP00000010035/1-1132 TVDSPAA-FC RGVLSEPG-S SLMPVLGYDP PQLYLAQLRE AFGDLALFFY ENSBTAP00000004312/1-1146 AVDSPAASFC RGLLSEPGPS SLMPVLGYDP PQLYLAQLRE AFGHLALFFY bmy_05681T0/1-1173 AVDSPAASFC RGLLSEPGPS SLMPVLGYDP PQLYLAQLRE AFGDLALFFY BACU006658/1-1143 AVDSPAASFC RGLLSEPGPS SLMPVLGYDP PQLYLAQLRE AFGDLALFFY 1151 1200 ENSP00000297990/1-1146 DQHGGEVIGV LWKPTSFQPQ PFKASSTKGR MVMSRGGELV MVPNVEAILE ENSTTRP00000010035/1-1132 DQHGGKVIGV LWKPTSFQPQ PLKASNTKGR MVVSQGGELV MVPNVEAILE ENSBTAP00000004312/1-1146 DQHGGEVIGV LWKPTSFQPQ PFKVSNTKGR IVVSQGGEPV MVPNVEAILE bmy_05681T0/1-1173 DQHGGKVIGV LWKPTSFQPQ PLKASNTKGR MVVSQGGELV MVPNVEAILE BACU006658/1-1143 DQHGGKVIGV LWKPTSFQPQ PLKASNTKGR MVVSQGGELV MVPNVEAILE 1201 1250 ENSP00000297990/1-1146 DFAVLGEGLV QTVEARSERW TV ENSTTRP00000010035/1-1132 DFAILGEGLV QAVEARSERW TV ENSBTAP00000004312/1-1146 DFAILGEGLV QAVEARSERW TV bmy_05681T0/1-1173 DFAILGEGLV QAVEARSERW TV BACU006658/1-1143 DFAILGEGLV QAVEARSERW TV