KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:23:37 2014 Check: 00 .. Name: ENSTTRP00000004806/1-1061 Len: 1416 Check: 9418 Weight: 1.00 Name: ENSP00000428657/1-1403 Len: 1416 Check: 9084 Weight: 1.00 Name: ENSBTAP00000004317/1-1406 Len: 1416 Check: 6475 Weight: 1.00 Name: bmy_09392T0/1-1058 Len: 1416 Check: 1803 Weight: 1.00 Name: BACU006213/1-1402 Len: 1416 Check: 1778 Weight: 1.00 // 1 50 ENSTTRP00000004806/1-1061 ---------- ---------- ---------- ---------- ---------- ENSP00000428657/1-1403 MATQQKASDE RISQFDHNLL PELSALLGLD AVQLAKELEE EEQKERAKMQ ENSBTAP00000004317/1-1406 MATQEKAPEE RISQFDYALL PEMSAFLGVN ALQFVKEIEE KEHRDREKMQ bmy_09392T0/1-1058 ---------- ---------- ---------- ---------- ---------- BACU006213/1-1402 MAAQEKAPDE RISQFDYALL PELSGLLGID MLQYVKEVEE EEQKEREKMQ 51 100 ENSTTRP00000004806/1-1061 ---------- ---------- ---------- ---------- ---------- ENSP00000428657/1-1403 KGYNSQMRSE AKRLKTFVTY EPYSSWIPQE MAAAGFYFTG VKSGIQCFCC ENSBTAP00000004317/1-1406 KGFNSQMRSE AKRLKTFVTY NTFRSWTSQE MAEAGFYLTG TKSGIQCFCC bmy_09392T0/1-1058 ---------- ---------- ---------- ---------- ---------- BACU006213/1-1402 KGFNSQMRSE AKRLKTFVTY DDYSAWTPQE MAAAGFYFTG IKSGVQCFCC 101 150 ENSTTRP00000004806/1-1061 ---------- ---------- ---------- ---------- ---------- ENSP00000428657/1-1403 SLILFGAGLT RLPIEDHKRF HPDCGFLLNK DVGNIAKYDI RVKNLKSRL- ENSBTAP00000004317/1-1406 SLILFGTSLQ NTPMEHHKKF HPDCEFLLGK DVGNIAKYDV RVQKPENTLR bmy_09392T0/1-1058 ---------- ---------- ---------- ---------- ---------- BACU006213/1-1402 SLILFGTGPQ RLPIEDHKKF HPDCEFLLGK DVGNIAKYDI RVKYPENKLR 151 200 ENSTTRP00000004806/1-1061 ---------- ---------- ---------- ---------- ---------- ENSP00000428657/1-1403 RGGKMRYQEE EARLASFRNW PFYVQGISPC VLSEAGFVFT GKQDTVQCFS ENSBTAP00000004317/1-1406 RDDKARYQEE KARLESFKNW PFYAQGTSPR ELSAAGFVFT GKHDTVQCFS bmy_09392T0/1-1058 ---------- ---------- ---------- ---------- ---------- BACU006213/1-1402 RDDKARYQEE KARLKSYKKW PFYAQGTAPR ELSAAGFVFT GKCDTVQCFS 201 250 ENSTTRP00000004806/1-1061 ---------- ---------- ---------- ---------- ---------- ENSP00000428657/1-1403 CGGCLGNWEE GDDPWKEHAK WFPKCEFLRS KKSSEEITQY IQSYKGFVDI ENSBTAP00000004317/1-1406 CGGCLGNWED DDDPWKEHAK WFPKCEFLQS KKSLEEITQY IQSYKGFVDV bmy_09392T0/1-1058 ---------- ---------- ---------- ---------- ---------- BACU006213/1-1402 CGGCLGNWED DDDPWKEHAK WFPKCEFLQS KKSSEEITRY IQSYKGFVGV 251 300 ENSTTRP00000004806/1-1061 ---------- ---------- ---------- ---------- ---------- ENSP00000428657/1-1403 TGEHFVNSWV QRELPMASAY CND---SIFA YEELRLDSFK DWPRESAVGV ENSBTAP00000004317/1-1406 TGEHFLNSWV KRDLSVASVC CNGSNSSSFV NEELLLQSFK SWHPSYPVGA bmy_09392T0/1-1058 ---------- ---------- ---------- ---------- ---------- BACU006213/1-1402 TGEHFVNSWV KRDLPMASVC CNG---NIFA NEELRLDSFK NWPQASPVGA 301 350 ENSTTRP00000004806/1-1061 ---------- ---------- ---------- ---------- -----CQFLH ENSP00000428657/1-1403 AALAKAGLFY TGIKDIVQCF SCGGCLEKWQ EGDDPLDDHT RCFPNCPFLQ ENSBTAP00000004317/1-1406 AALAKAGFFY TGKSDIVQCY SCGGYLHDWK EGDDPLEEHA KFFPNCQFLQ bmy_09392T0/1-1058 ---------- ---------- ---------- ---------- ---------- BACU006213/1-1402 AALANAGFFY VGKSDTVQCF SCGGCLYKFE EGDDPLEGHT KYFPNCQFLQ 351 400 ENSTTRP00000004806/1-1061 NMKCSAEVIP DLQSHGELSD LTETTSESNL EES-AVSSAV PEVAHGEAQW ENSP00000428657/1-1403 NMKSSAEVTP DLQSRGELCE LLETTSESNL EDSIAVGPIV PEMAQGEAQW ENSBTAP00000004317/1-1406 SVKSSAEAIP DLQSHDELSE LTETTNEGNL EESTAVSSIV PEVAQGEAQW bmy_09392T0/1-1058 -MKCSAEVIP DLQSHGELSD LTETTSESNL EES-AVSSVV P--GKDLERW BACU006213/1-1402 NMKCSAEVIP DLQSHGELSD LTETTSEGNL EES-AVSSVV PEVAHGEAQW 401 450 ENSTTRP00000004806/1-1061 LQ------EA KSLSERLRKA YTSAPFCHMS LLEVSSCLAT DQLLNCDLSL ENSP00000428657/1-1403 FQ------EA KNLNEQLRAA YTSASFRHMS LLDISSDLAT DHLLGCDLSI ENSBTAP00000004317/1-1406 FQ------EA ESLSEHLRKV YTSAPFCHMS LLEISSCLAT DQWLDCDLSF bmy_09392T0/1-1058 PMVKPSGFRR QSLSERLRKA YTSAPFCHMS LLEVSSCPAT DQLLSCDLSL BACU006213/1-1402 LQ------EA KSLSERLRKA YTSAPFSHMS LLEVSSCPAT DQLLSCDLSL 451 500 ENSTTRP00000004806/1-1061 ASKHITNTVQ EPVVLPEVFA NLNSVMCVEG EAGSGKTVLL KTVALLWASG ENSP00000428657/1-1403 ASKHISKPVQ EPLVLPEVFG NLNSVMCVEG EAGSGKTVLL KKIAFLWASG ENSBTAP00000004317/1-1406 ALKHITNPVQ EPVVLPEVFA NLNSVMCVEG EAGSGKTILL KKIAHLWASG bmy_09392T0/1-1058 ASKHIINTVQ EPVVLPEVFA NLNSVVCVEG EAGSGKTVLL KKVALLWASG BACU006213/1-1402 ASKHIISTVQ EPVVLPEVFA NLNSVVCVEG EAGSGKTVLL KKVALLWASG 501 550 ENSTTRP00000004806/1-1061 CCPLLHRFQL VFYVSLGSAR LDRGLANVIC DQLLETEGSV TETGLWNIIQ ENSP00000428657/1-1403 CCPLLNRFQL VFYLSLSSTR PDEGLASIIC DQLLEKEGSV TEMCVRNIIQ ENSBTAP00000004317/1-1406 RCPLLNRFRL VFCLSLGSTR PEQGLASVIR DQLLETKLSV TEMGLRNIIQ bmy_09392T0/1-1058 CCPLLHRFQL VFYVSLGSTR LDQGLANVIC DQLLETEGSV TEMGLRNIIQ BACU006213/1-1402 CCPLLHRFQL VFYVSLGSTR LDQGLANVIC DQLLETEGSV TEMGLRNIIQ 551 600 ENSTTRP00000004806/1-1061 QLKNQVLFLL DDYKEMCSVP QSIERMIQRN HLSRTCLLIA VHTNRAKDIR ENSP00000428657/1-1403 QLKNQVLFLL DDYKEICSIP QVIGKLIQKN HLSRTCLLIA VRTNRARDIR ENSBTAP00000004317/1-1406 QLKNQVLFLL DDYKEMCSVP QVIARMIQKK HLSRTCLVIT VRTNRAKNIR bmy_09392T0/1-1058 QLKNQVLFLL DDYKEMGSIP QIIQRMIQKN HLSRTCLLIA VHTNRAKDIR BACU006213/1-1402 QLKNQVLFLL DDYKEMGSIP QIIQRMIQKN HLSRTCLLIA VHTNRAKDIR 601 650 ENSTTRP00000004806/1-1061 RHLDTILEIK AFPFCNTLYI LRKLFPDDLT RLRKFMVDFR INETWLGIQK ENSP00000428657/1-1403 RYLETILEIK AFPFYNTVCI LRKLFSHNMT RLRKFMVYFG KNQSLQKIQK ENSBTAP00000004317/1-1406 RYLDTIIEIK AFPFYNTISI LRKLFPGDLT RLRKLMVDFG MNQTWQGIQK bmy_09392T0/1-1058 RYLDTILEIK AFPFCNTIYI LRKLFPDNLT RLRKFMIDFR MNETLLGIQK BACU006213/1-1402 RYLDTILEIK AFPFCNTIYI LRKLFPDNLT RLRKFMIDFR MNETLLGIQK 651 700 ENSTTRP00000004806/1-1061 TPFFVAAVCA NWLRYPFCQS FDDVAVFKSY LECLFLRHKT AADLLKATVS ENSP00000428657/1-1403 TPLFVAAICA HWFQYPFDPS FDDVAVFKSY MERLSLRNKA TAEILKATVS ENSBTAP00000004317/1-1406 TPLFVAAVRA SWLQNRFHRS FDSVAVFESY MECLFLKHKT EADLLKATVS bmy_09392T0/1-1058 TPFVVAAICA NWLRYPLCQS FDDVAVFKSY IECLFLKHKT AADLLKATVS BACU006213/1-1402 TPFVVAAICA NWLRYPLCQS FDDVAVFRSY IECLFLKHKT AADLLKATVS 701 750 ENSTTRP00000004806/1-1061 SCGELALKGF FSSCFEFSDD DLLEVGIGED EDLAMYLMSK FTAQRLRPVY ENSP00000428657/1-1403 SCGELALKGF FSCCFEFNDD DLAEAGVDED EDLTMCLMSK FTAQRLRPFY ENSBTAP00000004317/1-1406 SCGDLALKGF FSSCFEFSDE DLIEAGIGEE EDLAMYLMSK FTAQRLRPVY bmy_09392T0/1-1058 SCGELALKGF FSSCFEFSDD DLIEVGIGED EDLAMYLMSK FTAQRLRPVY BACU006213/1-1402 SCGELALKGF FSSCFEFSDD DLIEVGIGED EDLAMYLMSK FTAQRLRPVY 751 800 ENSTTRP00000004806/1-1061 QFLNASFQEF LAGMRLTELL DSDRQEDQDS GLHYLKQINS AMMAIGPYAN ENSP00000428657/1-1403 RFLSPAFQEF LAGMRLIELL DSDRQEHQDL GLYHLKQINS PMMTVSAYNN ENSBTAP00000004317/1-1406 QFLNPAFQEF LAGMRLTELL DSDRQEDQDL GLHYLKRINS TLMVIYPYAN bmy_09392T0/1-1058 QFLNAAFQEF LAGMRLTELL DSDRQEDQDS GLRYLKQINS TMMAIGPYEN BACU006213/1-1402 QFLNAAFQEF LAGMRLTELL DSDRQEDQDS GLRYLKQINS TMMAIGPYEN 801 850 ENSTTRP00000004806/1-1061 FLNYVSCHSS TKAGPTIVSQ LLLLVDNQET LENISENDDY LKHHPEISEQ ENSP00000428657/1-1403 FLNYVSSLPS TKAGPKIVSH LLHLVDNKES LENISENDDY LKHQPEISLQ ENSBTAP00000004317/1-1406 FLNCVSRHPS TKAGPKIVSH LLLLVDNKET LENISENDDY LKHHPEISEV bmy_09392T0/1-1058 FLNYVSCHPS TKAGPTIVSQ LLLLVDNQET LENISENDDY LKHHPEISEK BACU006213/1-1402 FLNYVSCHPS TKAGPTVVSQ LLLLVDNQET LENISENDDY LKHHPEISEK 851 900 ENSTTRP00000004806/1-1061 MQCLRLLWQY SPENYLSLVS KHLLALAVKT AYRSNSVAAC XXXXXXXXXX ENSP00000428657/1-1403 MQLLRGLWQI CPQAYFSMVS EHLLVLALKT AYQSNTVAAC SPFVLQFLQG ENSBTAP00000004317/1-1406 MQFFRLIWQL SPQNYLSLAS KHLLALAIRI AYQSNTVAAC SPFILQFLRG bmy_09392T0/1-1058 MQLLRVLWQY SPEDYLSLVS KHLLALAVKI AYRSNTVAAC SPFILQFLQG BACU006213/1-1402 MQFLRVLWQY SPEDYLSLVS KHLLALAVKI AYRSNTVAAC SPFILQFLRG 901 950 ENSTTRP00000004806/1-1061 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSP00000428657/1-1403 RTLTLGALNL QYFFDHPESL SLLRSIHFPI RGNKTSPRAH FSVLETCFDK ENSBTAP00000004317/1-1406 RTLCLDVLKL QYFFDHPESL LLLRSIQVSI NGNRL-FKTD -TPLERIFDK bmy_09392T0/1-1058 RTLSLSVLKL PYFFDHPESL LLLGSIQVSI GGNRL-PKSD FSFLEKIFDK BACU006213/1-1402 RTLSLSVLKL PYFFDHPESL LLLGSIRVSI RGNRL-PKSD FSFLEKSFDK 951 1000 ENSTTRP00000004806/1-1061 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSP00000428657/1-1403 SQVPTIDQDY ASAFEPMNEW ERNLAEKEDN VKSYMDMQRR ASPDLSTGYW ENSBTAP00000004317/1-1406 SQAPTIEQDY ASAFELESEW KQSLDEKHEI IQNFQNMRLN APPAINTGYW bmy_09392T0/1-1058 SQAPTIGQDY ASAFELESEW KQNLVEKQET MNSFLNMQLK APADISTGYW BACU006213/1-1402 SQAPTIDQDY ASAFELESEW KQNLVEKQET MNRFLNMQLK APADISTGYW 1001 1050 ENSTTRP00000004806/1-1061 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSP00000428657/1-1403 KLSPKQYKIP CLEVDVNDID VVGQDMLEIL MTVFSASQRI ELHLNHSRGF ENSBTAP00000004317/1-1406 NLPSKQYKIP LLEVHVTNTH AVDQEMLRFL TEVFSAAQHI ELHLNHSRGF bmy_09392T0/1-1058 NLSPKQYKIP VLEVRVTGTD AVDQEMLRFL MKVFSASQHI ELHLTSSGGF BACU006213/1-1402 NLSPKQYKIP LLEVRVTGTD AVDQEMLRFL MKVFSASQRI ELHLTSSGGF 1051 1100 ENSTTRP00000004806/1-1061 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSP00000428657/1-1403 IESIRPALEL SKASVTKCSI SKLELSAAEQ ELLLTLPSLE SLEVSGTIQS ENSBTAP00000004317/1-1406 IENIRPALEQ FRASFTKCCI SQCELSAIEQ ELLLTLTSLE SLEVSETTHP bmy_09392T0/1-1058 IESIRPALEQ YKASFTKCSI SQFELSAVEQ ELLLALPSLE SLEVSETTHL BACU006213/1-1402 IESIRPALEQ YKASFTKCSI SQFELSAVEQ ELLLTLPSLE SLEVSETTHL 1101 1150 ENSTTRP00000004806/1-1061 QDQLFLSLDK FLCLKELSVN LDDKRDVFSV IPEEFLNLHH MEKLLIQILA ENSP00000428657/1-1403 QDQIFPNLDK FLCLKELSVD LEGNINVFSV IPEEFPNFHH MEKLLIQISA ENSBTAP00000004317/1-1406 QDQLFLSLDK FLCLKELSVN L--QQDVFSA ISEEFLNLHH MEKLLIQISS bmy_09392T0/1-1058 QDQLFLSLDK FLCLKELSVN LDDKRDVFSV IPEEFLNLHH MEKLLIRILA BACU006213/1-1402 QDQLFLSLDK FLCLKELSVN LDDKRDVFSV IPEEFLNLHH MEKLLIRILA 1151 1200 ENSTTRP00000004806/1-1061 EYGPSKLVKL IQNSPNLRVF HLQCNFFSDL ESLMTVLASC KKLEEIKLTG ENSP00000428657/1-1403 EYDPSKLVKL IQNSPNLHVF HLKCNFFSDF GSLMTMLVSC KKLTEIKFSD ENSBTAP00000004317/1-1406 KCSPSKLVRL VQNSPNLQVF HLECNSFSDF ESLVTALASR KKLEEIKFSG bmy_09392T0/1-1058 EYGPSKLVKL IQNSPNLRVF HLQCNFFSDL ESLMTVLASC KKLEEINLTG BACU006213/1-1402 EYGPSKLVKL IQNSPNLRVF HLQCNFFSDL ESLMTVLASC KKLEEIKLTG 1201 1250 ENSTTRP00000004806/1-1061 PFFKAAPFVI VLPNFISLKI LNLEHQYIPD KETAEKFAYT LGSLNNLEEL ENSP00000428657/1-1403 SFFQAVPFVA SLPNFISLKI LNLEGQQFPD EETSEKFAYI LGSLSNLEEL ENSBTAP00000004317/1-1406 QFFQANPFVI VLPNFTSLKI LKLGIQYIPD KETAEKFAYA LGSLNNLEEL bmy_09392T0/1-1058 PFFKAAPFVV VLPNFISLKI LNLEHQYITD KETAEKFAYT LGSLNNLEEL BACU006213/1-1402 PFFKAAPFVV LLPNFISLKI LNLEHQYITD KETAEKFAYT LGSLNNLEEL 1251 1300 ENSTTRP00000004806/1-1061 ILPTGDGIHQ VAKLIIQQCQ HLQCLRILSF FQTLDDDSVV EIAKVAINGG ENSP00000428657/1-1403 ILPTGDGIYR VAKLIIQQCQ QLHCLRVLSF FKTLNDDSVV EIAKVAISGG ENSBTAP00000004317/1-1406 ILPTGDGIHQ MAKLIIQQCQ HLQCLQVLQF FKTLDDDSVV EIAKVAINGG bmy_09392T0/1-1058 ILPTGDGIHQ VAKLIIQPCQ HLQCLRILSF FQTLDDDSVV EIAKVAINGG BACU006213/1-1402 ILPTGDGIHQ VAKLIIQQCQ HLQCLRILSF FQTLDDDSVV EIAKVAINGG 1301 1350 ENSTTRP00000004806/1-1061 FQKLKNLNLS INHKITEEGY RNFFQTLDNM PNLQELTISR HFKECIKAQA ENSP00000428657/1-1403 FQKLENLKLS INHKITEEGY RNFFQALDNM PNLQELDISR HFTECIKAQA ENSBTAP00000004317/1-1406 FQKLKHLDFS MNHKITEEGY RNFFQTLDNL PSLQELTISR HFKECIKVQA bmy_09392T0/1-1058 FQKLENLNLS INHKITEEGY RNFFQTLDNM PNLQELTISR HFKECIKAQA BACU006213/1-1402 FQKLENLNLS INHKITEEGY RNFFQTLDNM PNLQELTISR HFKECIKAQA 1351 1400 ENSTTRP00000004806/1-1061 ITVKSLSQCV LRLPRLTRLN MLSWLLDAED ITLLNAVIER HPLSKHFTLH ENSP00000428657/1-1403 TTVKSLSQCV LRLPRLIRLN MLSWLLDADD IALLNVMKER HPQSKYLTIL ENSBTAP00000004317/1-1406 ATVKSLSQCV LRLPSLLRLN MLSWLLDAED ITLLTATIKK HPQSKHFILS bmy_09392T0/1-1058 TTVKSLSQCV LRLRRLTRLN MLSWLLDAED ITLLTAMIER HPLSKHFTLH BACU006213/1-1402 TTVKSLSQCV LRLRRLTRLN MLSWLLDAED ITLLTAMIER HPLSKHFTLH 1401 1450 ENSTTRP00000004806/1-1061 WKWVLPFSPI IQK--- ENSP00000428657/1-1403 QKWILPFSPI IQK--- ENSBTAP00000004317/1-1406 WKWILPFSPI IQEPIS bmy_09392T0/1-1058 WKWVLPFSPI IQK--- BACU006213/1-1402 WKWVLPFSPI IQK---