KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:23:40 2014 Check: 00 .. Name: ENSP00000387462/1-871 Len: 1001 Check: 9401 Weight: 1.00 Name: bmy_09578T0/1-721 Len: 1001 Check: 1080 Weight: 1.00 Name: ENSBTAP00000004333/1-869 Len: 1001 Check: 5897 Weight: 1.00 Name: BACU011179/1-814 Len: 1001 Check: 1409 Weight: 1.00 Name: ENSTTRP00000010949/1-523 Len: 1001 Check: 93 Weight: 1.00 // 1 50 ENSP00000387462/1-871 MSFSEMNRRT LAFRGGGLVT A--SGGGSTN NNAGGEASAW PPQPQPRQPP bmy_09578T0/1-721 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000004333/1-869 VSKSKMNHNT LEFVPGELVA N--GGGGSAN NNVGGEASAW PQQPQPRQPP BACU011179/1-814 MSFSEMNRRT LAFRGGGLVT ASGGGGGSAN NNVGGEASAW PQHPQPRQPQ ENSTTRP00000010949/1-523 ---------- ---------- ---------- ---------- ---------- 51 100 ENSP00000387462/1-871 PPAPPALQPP NGRGADEEVE LEGLEPQDLE ASAGPAAGAA EEAKELLLPQ bmy_09578T0/1-721 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000004333/1-869 PPAP---QPL NGRGADEEVE LEGLEPQDLE ASAG-AAAAA EETNELLLPQ BACU011179/1-814 PPAP---QQL NGRGADEEVE LEGLEPQDLE ASAG-VAAAA EETKELLLPQ ENSTTRP00000010949/1-523 ---------- ---------- ---------- ---------- ---------- 101 150 ENSP00000387462/1-871 DAGGPTSL-G GGAGGPLLAE RNRRTLAFR- --GGGGGGLG NNGSSRGRPE bmy_09578T0/1-721 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000004333/1-869 DAGGPTSLGG GGAGGPLLAE RNRRTLAFR- -GGGGGGGLG NNGSSRGRPE BACU011179/1-814 DAGGPTSLGG GGAGGPLLAE RNRRTLAFRG GGGGGGGGLG NNGSSRGRPE ENSTTRP00000010949/1-523 ---------- ---------- ---------- ---------- ---------- 151 200 ENSP00000387462/1-871 TSVWPLRHFN GRGPATVDLE LDALEGKELM QDGASLSDST EDEEEGASLG bmy_09578T0/1-721 ---------- ---------- ---------M PDGASLSDST EDEEEGASLG ENSBTAP00000004333/1-869 TSAWPLRHFN GRGPAALELE LDALEGKELM PDGASLSEST EDEEEGASLG BACU011179/1-814 ISAWPLRHFN GRGPAAVELE LDALEGKELM PDGASLSDST EDEEEGASLG ENSTTRP00000010949/1-523 ---------- ---------- ---------- ---------- ---------- 201 250 ENSP00000387462/1-871 DGSGAEGGSC SSSRRSGGDG GDEVEGSGVG AGEGETVQHF PLARPKSLMQ bmy_09578T0/1-721 DGSGAEGGSC SSSRRSGGDG GDEAEGSGVG AGEGETVQHF PLARPKSLMQ ENSBTAP00000004333/1-869 DGSGAEGGSC SSSRRSGGDG GDEAEGSGVG AGEGETVQHF PLARPKSLMQ BACU011179/1-814 DGSGAEGGSC SSSRRSGGDG GDEAEGSGVG AGEGETVQHF PLARPKSLMQ ENSTTRP00000010949/1-523 ---------- ---------- ---------- ---------- ---------- 251 300 ENSP00000387462/1-871 KLQCSFQTSW LKDFPWLRYS KDTGLMSCGW CQKTPADGGS VDLPPVGHDE bmy_09578T0/1-721 KLQCSFQTSW LKDFPWLRYS KDTGLMSCGW CQKTPEDGVS GDLPPVGHDE ENSBTAP00000004333/1-869 KLHCSFQTSW LKDFPWLRYS KDTGLMSCGW CQKPPEDGGS GDLPPVGHDE BACU011179/1-814 KLQCSFQTSW LKDFPWLRYS KDTGLMSCGW CQKTPEDGIS GDLPPVGHDE ENSTTRP00000010949/1-523 ---------- ---------- ---------- ---------- ---------- 301 350 ENSP00000387462/1-871 LSRGTRNYKK TLLLRHHVST EHKLHEANA- ---------- ---------- bmy_09578T0/1-721 LSRGTRNYKK TLLLRHHVST EHKLHEANAQ TFHDVLVNFD QCLKFLLLPS ENSBTAP00000004333/1-869 LSRGTRNYKK TLLLRHHVST EHKLHEANA- ---------- ---------- BACU011179/1-814 LSRGTRNYKK TLLLRHHVST EHKLHEANA- ---------- ---------- ENSTTRP00000010949/1-523 ---------- ---------- ---------- ---------- ---------- 351 400 ENSP00000387462/1-871 ---------- ---------Q ESEIPSEEGY CDFNSRPNEN SYCYQLLRQL bmy_09578T0/1-721 IHTVTTIPVR TSNRMSFAGQ ESEIPSEEGY CDFNSRPNEN SYCYQLLRQL ENSBTAP00000004333/1-869 ---------- ---------Q ESEIPSEEGY CDFNSRPNEN SYCYQLLRQL BACU011179/1-814 ---------- ---------Q ESEIPSEEGY CDFNSRPNEN SYCYQLLRQL ENSTTRP00000010949/1-523 ---------- ---------- ESEIPSEEGY CDFNSRPNEN SYCYQLLRQL 401 450 ENSP00000387462/1-871 NEQRKKGILC DVSIVVSGKI FKAHKNILVA GSRFFKTLYC FSNKESPNQN bmy_09578T0/1-721 NEQRKKGILC DVSIVVSGKI FKAHKNILVA GSRFFKTLYC FSNKESPNQN ENSBTAP00000004333/1-869 NEQRKKGILC DVSIVVSGKI FKAHKNILVA GSRFFKTLYC FSNKESPNQN BACU011179/1-814 NEQRKKGILC DVSIVVSGKI FKAHKNILVA GSRFFKTLYC FSNKESPNQN ENSTTRP00000010949/1-523 NEQRKKGILC DVSIVVSGKI FKAHKNILVA GSRFFKTLYC FSNKESPNQN 451 500 ENSP00000387462/1-871 NTTHLDIAAV QGFSVILDFL YSGNLVLTSQ NAIEVMTVAS YLQMSEVVQT bmy_09578T0/1-721 NTTHLDIAAV QGFSVILDFL YSGNLVLTSQ NAIEVMTVAS YLQMSEVVQT ENSBTAP00000004333/1-869 NTTHLDIAAV QGFSVILDFL YSGNLVLTSQ NAIEVMTVAS YLQMSEVVQT BACU011179/1-814 NTTHLDIAAV QGFSVILDFL YSGNLVLTSQ NAIEVMTVAS YLQMSEVVQT ENSTTRP00000010949/1-523 NTTHLDIAAV QGFSVILDFL YSGNLVLTSQ NAIEVMTVAS YLQMSEVVQT 501 550 ENSP00000387462/1-871 CRNFIKDALN ISIKSEAPES VVVDYNNRKP VNRDGLSSSR DQKIASFWAT bmy_09578T0/1-721 CRNFIKDALN ISIKSEAPES VVVDYNNRKP VNRDGLSSSR DQKIASFWAT ENSBTAP00000004333/1-869 CRNFIKDALN ISIKSEAPES VVVDYNNRKP VNRDGLSSSR DQKIASFWAT BACU011179/1-814 CRNFIKDALN ISIKSEAPES VVVDYNNRKP VNRDGLSSSR DQKIASFWAT ENSTTRP00000010949/1-523 CRNFIKDALN ISIKSEAPES VVVDYNNRKP VNRDGLSSSR DQKIASFWAT 551 600 ENSP00000387462/1-871 RNLTNLASNV KIENDGCNVD EGQIENYQMN DSSWVQDGSP EMAENESEGQ bmy_09578T0/1-721 RNLTNLASNV KIENDGCNVD EGQIENYQMN DSSWVQDGSP ELTENESQGQ ENSBTAP00000004333/1-869 RNLTNLASNV KIENDGCNVD EGQIENYQMN DSSWVQDGSP ELTENESQGQ BACU011179/1-814 RNLTNLASNV KIENDGCNVD EGQIENYQMN DSSWVQDGSP ELTENESQGQ ENSTTRP00000010949/1-523 RNLTNLASNV KIENDGCNVD EGQIENYQMN DSSWVQDGSP ELTENESQGQ 601 650 ENSP00000387462/1-871 TKVFIWNNMG SQGIQETGKT RRKNQTTKRF IYNIPPNNET NLEDCSVMQP bmy_09578T0/1-721 TKVFIWNNMG SQGIQETGKT RRKTQATKRF IYNIPPNNET NLEDCSVMQP ENSBTAP00000004333/1-869 TKVFIWNNMG SQGIQETSKT RRKTQATKRF VYNIPPNNET NLEDCSVMQP BACU011179/1-814 TKVFIWNNMG SQGIQETGKT RRKTQATKRF IYNIPPNNET NLEDCSVMQP ENSTTRP00000010949/1-523 TKVFIWNNMG SQGIQETGKT RRKTQATKRF IYNIPPNNET NLEDCSVMQP 651 700 ENSP00000387462/1-871 PVAYPEENTL LIKEEPDLDG ALLSGPDGDR NVNANLLAEA GTSQDGGDAG bmy_09578T0/1-721 SVAYPEEDLS FIKEEPDLDG ALLSGPDCDR NVNTNLLAEA GSSQDGGDA- ENSBTAP00000004333/1-869 PVAYPEEDLS FIKEEPDLDG ALLSGPDCDR NVSANLLTEA SSGQEGGDAG BACU011179/1-814 SVAYPEEDLS FIKEEPDLDG ALLSGPDCDR NVNTNLLAEA GSSQDGGDA- ENSTTRP00000010949/1-523 PVAYPEEDLS FIKEEPDLDG ALLSGPDCDR NVNTNLLAEA GSSQDGGDAG 701 750 ENSP00000387462/1-871 TSHDFKYGLM PGPSNDFKYG LIPGTSNDFK YGLIPGASND FKYGLLPESW bmy_09578T0/1-721 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000004333/1-869 PSHDFKYGLM PGPSSDFKYG LIPGTSNDYK YGLIPGASND FKYGLLPESW BACU011179/1-814 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000010949/1-523 PSHDFKYGLM PGPSS----- ---------- ---------D FKYGLLPESW 751 800 ENSP00000387462/1-871 PKQETWENGE SSLIMNKLKC PHCSYVAKYR RTLKRHLLIH TGVRSFSCDI bmy_09578T0/1-721 ---------- ---------- ---------- ---VNNILLD ISISNMIYEV ENSBTAP00000004333/1-869 PKQETWENGE SSLIMNKLKC PHCSYVAKYR RTLKRHLLIH TGVRSFSCDI BACU011179/1-814 --------GE SSLIMNKLKC PHCSYVAKYR RTLKRHLLIH TGVRSFSCDI ENSTTRP00000010949/1-523 PKQETWENGE SSLIMNKLKC PHCSYVAKYR RTLKRHLLIH TGVRSFSCDI 801 850 ENSP00000387462/1-871 CGKLFTRREH VKRHSLVHKK DKKYKCMVCK KIFMLAASVG IRHGSRRYGV bmy_09578T0/1-721 ---------- -------HKK DKKYKCMVCK KIFMLAASVG IRHGSRRYGV ENSBTAP00000004333/1-869 CGKLFTRREH VKRHSLVHKK DKKYKCMVCK KIFMLAASVG IRHGSRRYGV BACU011179/1-814 CGKLFTRREH VKRHSLVHKK DKKYKCMVCK KIFMLAASVG IRHGSRRYGV ENSTTRP00000010949/1-523 CGKLFTRREH VKRHSLVHKK DKKYKCMVCK KIFMLAASVG IRHGSRRYGV 851 900 ENSP00000387462/1-871 CVDCADKSQP GGQEGVDQGQ DTEFPRDEEY EENEVGEADE ELVDDGEDQN bmy_09578T0/1-721 CVDCADKSQP GGQEGVDQGQ DTDFPRDEEY EGNGGGEADE ELVDDGEDQN ENSBTAP00000004333/1-869 CVDCADKSQP GGQEGVDQGQ DTDFPRDEEY EGNGGGEADE ELVDDGEDQN BACU011179/1-814 CVDCADKSQP GGQEGVDQGQ DTDFPRDEEY EGNGGGEADE ELVDDGEDQN ENSTTRP00000010949/1-523 CVDCADKSQP GGQEGVDQGQ DTDFPRDEEY EGNGGGEADE ELADDGEDQN 901 950 ENSP00000387462/1-871 DPSRWDESGE VCMSLDD--- ---------- ---------- ---------- bmy_09578T0/1-721 DASRWDESGD VSESSEDCRT DSDRRKEKMQ RQNSLRKSSC IHFLSSWQFP ENSBTAP00000004333/1-869 DASRWDESGD VCMSLDD--- ---------- ---------- ---------- BACU011179/1-814 DASRWDESGD VCMSLDD--- ---------- ---------- ---------- ENSTTRP00000010949/1-523 DASRWDESGD VCMSLDD--- ---------- ---------- ---------- 951 1000 ENSP00000387462/1-871 ---------- ---------- ---------- ---------- ---------- bmy_09578T0/1-721 YLQARAGYYS HDTQKRRQLK GSSEEVPGDT CSCDPGFENP SILLHLLGSM ENSBTAP00000004333/1-869 ---------- ---------- ---------- ---------- ---------- BACU011179/1-814 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000010949/1-523 ---------- ---------- ---------- ---------- ---------- 1001 1050 ENSP00000387462/1-871 - bmy_09578T0/1-721 A ENSBTAP00000004333/1-869 - BACU011179/1-814 - ENSTTRP00000010949/1-523 -