KEY:
ENSP* - Homo sapiens (Human)
ENSBTA* - Bos taurus (Cow)
ENSTTR* - Tursiops truncatus (Dolphin)
bmy_* - Balaena mysticetus (Bowhead whale)
BACU* - Balaenoptera acutorostrata (Minke whale)
Copy from below the line for a valid .msf file.
----------------------------------------------------------------------------------
NoName MSF: 5 Type: P Thu May 15 16:23:42 2014 Check: 00 ..
Name: bmy_11086T0/1-282 Len: 334 Check: 2202 Weight: 1.00
Name: BACU019125/1-330 Len: 334 Check: 7925 Weight: 1.00
Name: ENSTTRP00000005837/1-331 Len: 334 Check: 9439 Weight: 1.00
Name: ENSP00000357880/1-334 Len: 334 Check: 389 Weight: 1.00
Name: ENSBTAP00000004338/1-334 Len: 334 Check: 291 Weight: 1.00
//
1 50
bmy_11086T0/1-282 MEAAHFFEGT EKLLEVRFSR QQPDSNQGSG DLRTIPRYKW DILLKDVQCS
BACU019125/1-330 MEVAHFFEET EKVLEVWFSR QQPDANQVSG DLHTIPRSEW DILLKDVQCS
ENSTTRP00000005837/1-331 MEAAHFFEGT EKLLEVWFSR QQPDANQGSG DLRTIPRSEW DILLKDVLCS
ENSP00000357880/1-334 MEAAHFFEGT EKLLEVWFSR QQPDANQGSG DLRTIPRSEW DILLKDVQCS
ENSBTAP00000004338/1-334 MEAAHFFEGT EKLLEVWFSR QQPDANQGSG DLRTIPRSEW DILLKDVQCS
51 100
bmy_11086T0/1-282 VISVTKTDKQ EAY------- ---------- ---------- ----------
BACU019125/1-330 IISVTKTDKQ EAYVLSESSM FVSKRRFILK T-WYSLLLKA LVPLLKLARD
ENSTTRP00000005837/1-331 IISVTKTDKQ EAYVL--SSM FVSKRRFILK TCGTTLLLKA LVPLLKLARN
ENSP00000357880/1-334 IISVTKTDKQ EAYVLSESSM FVSKRRFILK TCGTTLLLKA LVPLLKLARD
ENSBTAP00000004338/1-334 IISVTKTDKQ EAYVLSESSM FVSKRRFILK TCGTTLLLKA LVPLLKLARD
101 150
bmy_11086T0/1-282 ---------- -----NFMKP SHQGYPHGNF REEIEFLNAI FPNGAAYCMG
BACU019125/1-330 YSGSD--QSF FYSCKNFMKS SHQGYPHRNF QEEIEFLNAI FPNGAAYCMG
ENSTTRP00000005837/1-331 YSGFDSIQSF FYSRKNFMKP SHQGYPHRNF QEEIEFLNAI FPNGATYCMG
ENSP00000357880/1-334 YSGFDSIQSF FYSRKNFMKP SHQGYPHRNF QEEIEFLNAI FPNGAAYCMG
ENSBTAP00000004338/1-334 YSGFDSIQSF FYSRKNFMKP SHQGYPHRNF QEEIEFLNAI FPNGAAYCMG
151 200
bmy_11086T0/1-282 RMNSDCWYLY TLDFPESRVI NQPDQTLEIL MSELDPAVMD QCYMKDGITA
BACU019125/1-330 GMNSDCWYLY TLDFPGSRVI NQPDQTLEIL MSELDPAVMD QFYMKDGVTA
ENSTTRP00000005837/1-331 RMNSDCWCFC TLDFPESRVI NQPDQTLEIL LSELDPAVTD QFYMKDGVTA
ENSP00000357880/1-334 RMNSDCWYLY TLDFPESRVI SQPDQTLEIL MSELDPAVMD QFYMKDGVTA
ENSBTAP00000004338/1-334 RMNSDCWYLY TLDFPESRVI NQPDQTLEIL MSELDPAVMD QFYMKDGVTA
201 250
bmy_11086T0/1-282 KDVTHESRIR DLIPGSVIDA TLFDPCGYSM NGMKSDGTYW TTHITPEPEF
BACU019125/1-330 KDVTRESGIC DLIPGSVIDP TLFNPCGYSM NGMKSDGTYW TIHITPEPQF
ENSTTRP00000005837/1-331 KDVTRESGIR DLIPGSVIDA TLFNPCGYSM NGMKLDGTYW TIHIT-EPEF
ENSP00000357880/1-334 KDVTRESGIR DLIPGSVIDA TMFNPCGYSM NGMKSDGTYW TIHITPEPEF
ENSBTAP00000004338/1-334 KDVTRESGIR DLIPGSVIDA TMFNPCGYSM NGMKSDGTYW TIHITPEPEF
251 300
bmy_11086T0/1-282 SYVSFETNLS QTSYDDLIRK VVEVFKPGKF VTTLFANQSS KCRTVLSSPQ
BACU019125/1-330 SYVSFETNLS QTSYDDLIRK VVEVFKPGK- VTTLFVNQSS KCHTVLSSHQ
ENSTTRP00000005837/1-331 SYVSFETNLS QTSYDDQIRK VVEVFKPGKF VTTLFVNQSS KCLTVLSPPQ
ENSP00000357880/1-334 SYVSFETNLS QTSYDDLIRK VVEVFKPGKF VTTLFVNQSS KCRTVLASPQ
ENSBTAP00000004338/1-334 SYVSFETNLS QTSYDDLIRK VVEVFKPGKF VTTLFVNQSS KCRTVLSSPQ
301 350
bmy_11086T0/1-282 KTESFKGLDC QSALFSDYNF VFTSFAKKRQ QQQS
BACU019125/1-330 KIEGFKRLDC QSAMFNDYNF VFTSFAKQQQ QQQS
ENSTTRP00000005837/1-331 SIEGFKRLDC QSAMFSDYNF VFTSFAEKQQ QQQS
ENSP00000357880/1-334 KIEGFKRLDC QSAMFNDYNF VFTSFAKKQQ QQQS
ENSBTAP00000004338/1-334 KIEGFKRLDC QSALFNDYNF VFTSFAKKQQ QQQS