KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:23:44 2014 Check: 00 .. Name: ENSTTRP00000001988/1-290 Len: 548 Check: 3973 Weight: 1.00 Name: bmy_03096T0/1-207 Len: 548 Check: 6913 Weight: 1.00 Name: BACU015866/1-429 Len: 548 Check: 9161 Weight: 1.00 Name: ENSP00000438095/1-326 Len: 548 Check: 4028 Weight: 1.00 Name: ENSBTAP00000004358/1-299 Len: 548 Check: 241 Weight: 1.00 // 1 50 ENSTTRP00000001988/1-290 RHSLPPPLAR LPGLPPPPRH FLEPQPLGLR GFKMEHFDAS LSTYFQALLG bmy_03096T0/1-207 ---------- ---------- ---------- ---------- ---------- BACU015866/1-429 ---------- ---------- ---------- ---------- ---------- ENSP00000438095/1-326 ---------- ---------- ---------- ---MEHFDAS LSTYFKALLG ENSBTAP00000004358/1-299 ---------- ---------- ---------- ---MEHFDAS LSTYFRAWLG 51 100 ENSTTRP00000001988/1-290 PRDPRVKGWF LLDSYIPTLL CSILYLLIVW LGPKYMKNRP PFSCRGILVL bmy_03096T0/1-207 ---------- ---------- ---------- ---------- ---------- BACU015866/1-429 ---------- -MENWRP--- CSS------- -APQ---VRR PHCATTVPTL ENSP00000438095/1-326 PRDTRVKGWF LLDNYIPTFI CSVIYLLIVW LGPKYMRNKQ PFSCRGILVV ENSBTAP00000004358/1-299 PRDTRVEGWF LLDNYVPTLV CSILYLLIVW LGPKYMKTRQ PFSCRGILVV 101 150 ENSTTRP00000001988/1-290 YNLGLTLLSL YMFCE----- ---------- ---------- --LVTGVWEG bmy_03096T0/1-207 ---------- ---------- ---------- ---------- ---------- BACU015866/1-429 LQ-------- ---------- ---------- ---------- --LVTGVWEG ENSP00000438095/1-326 YNLGLTLLSL YMFCESKREQ PRRSACASRT DPSTQQQLPE NRLVTGVWEG ENSBTAP00000004358/1-299 YNLGLTLLSL YMFCE----- ---------- ---------- --LVTGVWEG 151 200 ENSTTRP00000001988/1-290 QYNFFCQGTR SGGEADMKXX XXXXXXXXXX XXXXXXXXXX XXRKNYHQVT bmy_03096T0/1-207 ---------- ------MKIV RVLWWYYFSK LIEFMDTFFF ILRKNNHQVT BACU015866/1-429 QYNFFCQGTR SRGEADMKIV RVLWWYYFSK LIEFMDTFFF ILRKNNHQVT ENSP00000438095/1-326 KYNFFCQGTR TAGESDMKII RVLWWYYFSK LIEFMDTFFF ILRKNNHQIT ENSBTAP00000004358/1-299 QYNFFCQGTR SGGEADMKII RVLWWYYFSK LIEFMDTFFF ILRKNNHQIT 201 250 ENSTTRP00000001988/1-290 VLHVYFHASM LNIWWFVMNW VPCGH----- ---------- ------CTVC bmy_03096T0/1-207 VLHVYHHASM LNIWWFVMNW VPCGHSYFGA TLNSFIHVLM YSYYGLSSVP BACU015866/1-429 VLHVYHHASM LNIWWFVMNW VPCGHSYFGA TLNSFIHVLM YSYYGLSSVP ENSP00000438095/1-326 VLHVYHHASM LNIWWFVMNW VPCGHSYFGA TLNSFIHVLM YSYYGLSSVP ENSBTAP00000004358/1-299 VLHVYHHASM LNIWWFVMNW VPCGHSYFGA TLNSFIHVLM YSYYGLSSIP 251 300 ENSTTRP00000001988/1-290 ADHP------ ---PDQLRGH LAVRLPS--- --WLVVFP-D WI-----HDF bmy_03096T0/1-207 SMRPYLWWKK YITQGQLVQF VLTIIQTSCG VIWPCAFPLG WLYFQIGYMI BACU015866/1-429 SMRPYLWWKK YITQGQLLQF VLTIIQTSCG VIWPCAFPLG WLYFQIGYMI ENSP00000438095/1-326 SMRPYLWWKK YITQGQLLQF VLTIIQTSCG VIWPCTFPLG WLYFQIGYMI ENSBTAP00000004358/1-299 SMRPYLWWKK YITQGQLLQF VLTIIQTSCG VIWPCTFPLG WLYFQIGYMI 301 350 ENSTTRP00000001988/1-290 SDCPLHKLLY ---------- ---------S DLQQEGGLPE ERTP----ER bmy_03096T0/1-207 SLIALFTNFY IQM--QLGLC RGSHLPLCLA DLQQEGGLPE ERTPEGPPER BACU015866/1-429 SLIALFTNFY IQTYNKKGAS RRRE---HQK D-HQNGSVTA VNGHTSSFSS ENSP00000438095/1-326 SLIALFTNFY IQTYNKKGAS RRKD---HLK D-HQNGSMAA VNGHTNSFSP ENSBTAP00000004358/1-299 SLITLFTNFY IQTYNKKGVS RRRE---HQK D-HQNGSVAA VNGHISSFSS 351 400 ENSTTRP00000001988/1-290 LRDGRERPHQ QLF------- ---------- ---------- ---------- bmy_03096T0/1-207 LRDGRERPHQ QLF------- ---------- ---------- ---------- BACU015866/1-429 LENNVKPRKQ HLEVKTKIIV KQVLPGEILA LREMRVRSAK SEELRAPKNS ENSP00000438095/1-326 LENNVKPRKL RKD------- ---------- ---------- ---------- ENSBTAP00000004358/1-299 LENNVKPRKQ RKD------- ---------- ---------- ---------- 401 450 ENSTTRP00000001988/1-290 ---------- ---------- ---------- --------FS GTQCEAEEAA bmy_03096T0/1-207 ---------- ---------- ---------- --------FP GKQCEAEEAA BACU015866/1-429 HQELRLLRHQ MRQGCRLLAS FCYCKYARTT STTSFSLPWA GKRCPNCDGP ENSP00000438095/1-326 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000004358/1-299 ---------- ---------- ---------- ---------- ---------- 451 500 ENSTTRP00000001988/1-290 GLRPEG---- ---------- ---------- ---------- ---------- bmy_03096T0/1-207 ---------- ---------- ---------- ---------- ---------- BACU015866/1-429 LKLIPCRGHG GFPVTNFWRH DGRFIFFQSK GEHDHPKPET KLEAEARRAM ENSP00000438095/1-326 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000004358/1-299 ---------- ---------- ---------- ---------- ---------- 501 550 ENSTTRP00000001988/1-290 ---------- ---------- ---------- ---------- -------- bmy_03096T0/1-207 ---------- ---------- ---------- ---------- -------- BACU015866/1-429 KKTHSASSSV SSKLKQGPQI KTFHGLAFSH LLKPFGFALV IRQMEDIL ENSP00000438095/1-326 ---------- ---------- ---------- ---------- -------- ENSBTAP00000004358/1-299 ---------- ---------- ---------- ---------- --------