KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:23:48 2014 Check: 00 .. Name: ENSTTRP00000016367/1-333 Len: 361 Check: 1025 Weight: 1.00 Name: ENSP00000264607/1-335 Len: 361 Check: 1438 Weight: 1.00 Name: ENSBTAP00000004378/1-332 Len: 361 Check: 2696 Weight: 1.00 Name: bmy_22690T0/1-223 Len: 361 Check: 6598 Weight: 1.00 Name: BACU020560/1-321 Len: 361 Check: 6249 Weight: 1.00 // 1 50 ENSTTRP00000016367/1-333 MAEGG---GR AGPGLAGPNL KEWLREQFCD HPLEHCEDTR LHDAAYVGDL ENSP00000264607/1-335 MAEGGSPDGR AGPGSAGRNL KEWLREQFCD HPLEHCEDTR LHDAAYVGDL ENSBTAP00000004378/1-332 MAEGG---GR AGPAPAGPNL KEWLREQFCD HPLEHCEDTR LHDAAYVGDL bmy_22690T0/1-223 ---------- ---------- ---------- ---------- ---------- BACU020560/1-321 ---------- -----AGPNL KEWLREQFCD HPLEHCEDTR LHDAAYVGDL 51 100 ENSTTRP00000016367/1-333 QTLRSLLQEE SYRXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSP00000264607/1-335 QTLRSLLQEE SYRSRINEKS VWCCGWLPCT PLRIAATAGH GSCVDFLIRK ENSBTAP00000004378/1-332 QTLRSLLQEE SYRSRINEKS VWCCGWLPCT PLRIAATAGH GNCVDFLIRK bmy_22690T0/1-223 ---------- ---------- ---------- ---------- ---------- BACU020560/1-321 QTLRSLLQEE SYRSPINQKS VWCCGWLPCT PLRIAATAGH GNCVDFLIRK 101 150 ENSTTRP00000016367/1-333 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSP00000264607/1-335 GAEVDLVDVK GQTALYVAVV NGHLESTQIL LEAGADPNGS RHHRSTPVYH ENSBTAP00000004378/1-332 GAEVDLVDVK GQTALYVAVV NGHLESAQIL LEAGADPNGS RHHRSTPVYH bmy_22690T0/1-223 ---------- ---------- ---------- --------GS RHHRSTPVYH BACU020560/1-321 GAEVDLVDVK GQTALYVAVV NGHLESAQIL LEAGADPNGS RHHRSTPVYH 151 200 ENSTTRP00000016367/1-333 XXXXXXXXXX XXXXXYGADV DVNHHLTPDV QPPFSRRLTS LVVCPLYISA ENSP00000264607/1-335 ASRVGRADIL KALIRYGADV DVNHHLTPDV QPRFSRRLTS LVVCPLYISA ENSBTAP00000004378/1-332 ASRVGRADIL KALIRYGADV DVNHHLTPDA QPPFSRRLTS LVVCPLYISA bmy_22690T0/1-223 ASRVGRADIL KALIRYGADV DVNHHLTPDV QPPFSRRLTS LVVCPLYISA BACU020560/1-321 ASRVGRADIL KALIRYGADV DVNHHLTPDV QPPFSRRLTS LVVCPLYISA 201 250 ENSTTRP00000016367/1-333 AYHNLQCFKL LLQAGANPDF NCNGPVNTQG FYRGSPGCVM DAVLRHGCEA ENSP00000264607/1-335 AYHNLQCFRL LLLAGANPDF NCNGPVNTQG FYRGSPGCVM DAVLRHGCEA ENSBTAP00000004378/1-332 AYHNLQCFKL LLQAGANPDF NCNGPVNTQG FYRGSPGCVM DAVLRHGCEA bmy_22690T0/1-223 AYHNLQCFKL LLQAGANPDF NCKGPVNTQG FYRGSPGCVM DAVLRHGCEA BACU020560/1-321 AYHNLQCFKL LLQAGANPDF NCNGPVNTQG LSRGSPGCVM DAVLRHGCEA 251 300 ENSTTRP00000016367/1-333 AFVSLLVEFG ANLNLVKWES LGPESRGRRK VDPEALQVFK EARSVPRTLL ENSP00000264607/1-335 AFVSLLVEFG ANLNLVKWES LGPESRGRRK VDPEALQVFK EARSVPRTLL ENSBTAP00000004378/1-332 AFVSLLVEFG ANLNLVKWES LGPESRGRRK VDPEALQVFK EARSVPRSLL bmy_22690T0/1-223 AFVSLLVEFG ANLSLVKWES LGPESRGRRK VDPEALQVFK EARSVPRTLL BACU020560/1-321 AFVSLLVEFG ANLSLVRWES SGPESRGRRK VDPEALQVFK EARSVPRTLL 301 350 ENSTTRP00000016367/1-333 NLCRVAVRRA LGKYRLHLIP SLPLPDPIKK FLLYEQ---- ---------- ENSP00000264607/1-335 CLCRVAVRRA LGKHRLHLIP SLPLPDPIKK FLLHE----- ---------- ENSBTAP00000004378/1-332 NLCRVAVRRA LGKYRLHLIP SLPLPDPIKK FLLYE----- ---------- bmy_22690T0/1-223 NLCRVAVRRA LGKHRLHLIP SLPLPDPIKK FLLYEQNSRA VVDCGEEEAI BACU020560/1-321 NLCRVAVRRA LGKHRLHLIP SLPLPDPIKK FLLYEQ---- ---------- 351 400 ENSTTRP00000016367/1-333 ---------- - ENSP00000264607/1-335 ---------- - ENSBTAP00000004378/1-332 ---------- - bmy_22690T0/1-223 CRAGRHRFLP L BACU020560/1-321 ---------- -