KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:23:49 2014 Check: 00 .. Name: ENSTTRP00000015001/1-760 Len: 846 Check: 4196 Weight: 1.00 Name: ENSP00000324287/1-778 Len: 846 Check: 3848 Weight: 1.00 Name: ENSBTAP00000004381/1-780 Len: 846 Check: 9310 Weight: 1.00 Name: bmy_02292T0/1-718 Len: 846 Check: 1922 Weight: 1.00 Name: BACU003796/1-772 Len: 846 Check: 4337 Weight: 1.00 // 1 50 ENSTTRP00000015001/1-760 ---------- --------AA LEEVEGDVAE LELKLDKXXX XXXXXXXXXX ENSP00000324287/1-778 MKMTVDFEEC LKDSPRFRAA LEEVEGDVAE LELKLDKLVK LCIAMIDTGK ENSBTAP00000004381/1-780 SVVTHDYEIF ILCSKFFRAA LEEVEGDVAE LELKLDKLVK LCIAMIDTGK bmy_02292T0/1-718 --MTVDFEEC LKDSPRFRAA LEEVEGDVAE LELKLDKLVK LCIAMIDTGK BACU003796/1-772 ---------- ---------- ---------- ---------- ----MIDTGK 51 100 ENSTTRP00000015001/1-760 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXILFDQ ENSP00000324287/1-778 AFCVANKQFM NGIRDLAQYS SNDAVVETSL TKFSDSLQEM INFHTILFDQ ENSBTAP00000004381/1-780 AFCVANKQFM NGIRDLAQYS SNDAVVETSL TKFSDSLQEM INFHTILFDQ bmy_02292T0/1-718 AFCVANKQFM NGIRDLAQYS SNDAVVETSL TKFSDSLQEM INFHTILFDQ BACU003796/1-772 AFCVANKQFM NGIRDLAQYS SNDAVVETSL TKFSDSLQEM INFHTILFDQ 101 150 ENSTTRP00000015001/1-760 TQRSIKAQLQ NFVKEDLRKF KDAKKQFEKV SEEKENALVK NAQVQRNKQH ENSP00000324287/1-778 TQRSIKAQLQ NFVKEDLRKF KDAKKQFEKV SEEKENALVK NAQVQRNKQH ENSBTAP00000004381/1-780 TQRSIKAQLQ NFVKEDLRKF KDAKKQFEKV SEEKENALVK NAQVQRNKQH bmy_02292T0/1-718 TQRSIKAQLQ NFVKEDLRKF KDAKKQFEKV SEEKENALVK NAQVQRNKQH BACU003796/1-772 TQRSIKAQLQ NFVKEDLRKF KDAKKQFEKV SEEKENALVK NAQVQRNKQH 151 200 ENSTTRP00000015001/1-760 EVEEATNILT ATRKCFRHIA LDYVLQINVL QSKRRSEILK SMLSFMYAHL ENSP00000324287/1-778 EVEEATNILT ATRKCFRHIA LDYVLQINVL QSKRRSEILK SMLSFMYAHL ENSBTAP00000004381/1-780 EVEEATNILT ATRKCFRHIA LDYVLQINVL QSKRRSEILK SMLSFMYAHL bmy_02292T0/1-718 EVEEATNILT ATRKCFRHIA LDYVLQINVL QSKRRSEILK SMLSFMYAHL BACU003796/1-772 EVEEATNILT ATRKCFRHIA LDYVLQ---- ---------- -MLSFMYAHL 201 250 ENSTTRP00000015001/1-760 AFFHQGYDLF SELGPYMKDL GAQLDRLVVD AAKEKREMEQ KHSTIQQKDF ENSP00000324287/1-778 AFFHQGYDLF SELGPYMKDL GAQLDRLVVD AAKEKREMEQ KHSTIQQKDF ENSBTAP00000004381/1-780 AFFHQGYDLF SELGPYMKDL GAQLDRLVVD AAKEKREMEQ KHSTIQQKDF bmy_02292T0/1-718 AFFHQGYDLF SELGPYMKDL GAQLDRLVVD AAKEKREMEQ KHSTIQQKDF BACU003796/1-772 AFFHQGYDLF SELGPYMKDL GAQLDRLVVD AAKEKREMEQ KHSTIQQKDF 251 300 ENSTTRP00000015001/1-760 SSDDSKLEYN VDAANGIVME GYLFKRASNA FKTWNRRWFS IQNNQLVYQK ENSP00000324287/1-778 SSDDSKLEYN VDAANGIVME GYLFKRASNA FKTWNRRWFS IQNNQLVYQK ENSBTAP00000004381/1-780 SNDDSKLEYN VDAANGIVME GYLFKRASNA FKTWNRRWFS IQNNQLVYQK bmy_02292T0/1-718 SSDDSKLEYN VDAANGIVME GYLFKRASNA FKTWNRRWFS IQNNQLVYQK BACU003796/1-772 SSDDSKLEYN VDAANGIVME GYLFKRASNA FKTWNRRWFS IQNNQLVYQK 301 350 ENSTTRP00000015001/1-760 KFKDNPTVVV EDLRLCTVKH CEDIERRFCF EVVSPTKSCM LQADSEKLRQ ENSP00000324287/1-778 KFKDNPTVVV EDLRLCTVKH CEDIERRFCF EVVSPTKSCM LQADSEKLRQ ENSBTAP00000004381/1-780 KFKDNPTVVV EDLRLCTVKH CEDIERRFCF EVVSPTKSCM LQADSEKLRQ bmy_02292T0/1-718 KFKDNPTVVV EDLRLCTVKH CEDIERRFCF EVVSPTKSCM LQADSEKLRQ BACU003796/1-772 KFKDNPTVVV EDLRLCTVKH CEDIERRFCF EVVSPTKSCM LQADSEKLRQ 351 400 ENSTTRP00000015001/1-760 AWIKAVQTSI ATAYREKGDE SEKLDKKSSP STGSLDSGNE SKDKLLKGES ENSP00000324287/1-778 AWIKAVQTSI ATAYREKGDE SEKLDKKSSP STGSLDSGNE SKEKLLKGES ENSBTAP00000004381/1-780 AWIKAVQTSI ATAYREKGDE SEKLDKKSSP STGSLDSGNE SKDKLLKGES bmy_02292T0/1-718 AWIKAVQTSI ATAYREKGDE SE-------- ---------- ---------- BACU003796/1-772 AWIKAVQTSI ATAYREKGDE SEKLDKKSSP STGSLDSGNE SKDKLLKGES 401 450 ENSTTRP00000015001/1-760 ALQRVQCIPG NASCCDCGLA DPRWASINLG ITLCIECSGI H--RSLGVHF ENSP00000324287/1-778 ALQRVQCIPG NASCCDCGLA DPRWASINLG ITLCIECSGI H--RSLGVHF ENSBTAP00000004381/1-780 ALQRVQCIPG NASCCDCGLA DPRWASINLG ITLCIECSGI HRLRSLGVHF bmy_02292T0/1-718 ---------- ---------- ---------- ---------- ---------- BACU003796/1-772 ALQRVQCIPG NASCCDCGLA DPRWASINLG ITLCIECSGI H--RSLGVHF 451 500 ENSTTRP00000015001/1-760 SKVRSLTLDT WEPELLKLMC EWGNDVRNRV YEANVEKMGL KKPPSGQRQE ENSP00000324287/1-778 SKVRSLTLDT WEPELLKLMC ELGNDVINRV YEANVEKMGI KKPQPGQRQE ENSBTAP00000004381/1-780 SKVRSLTLDT WEPELLKLMC ELGNDVINRV YEANLEKMGI KKPHPGQRQE bmy_02292T0/1-718 ---------- -------LMC ELGNDVMNRV YEADVEKMGI KKPQPGQRQE BACU003796/1-772 SKVRSLTLDT WEPELLKLMC ELGNDVMNRV YEADVEKMGI KKPQPGQRQE 501 550 ENSTTRP00000015001/1-760 KEAYIRAKYV ERKFVDKYSI SSSPPEQEKQ IVSKSCEEKR LSISKLGPSE ENSP00000324287/1-778 KEAYIRAKYV ERKFVDKYSI SLSPPEQQKK FVSKSSEEKR LSISKFGPGD ENSBTAP00000004381/1-780 KEAYIRAKYV ERKFVDKYSM SSSPPEQEKK IVSKSCEEKR LSISKLGPSE bmy_02292T0/1-718 KEAYIRAKYV ERKFVDKYSI SSSPPEQEKK IASKSCEEKR LSISKLGPSE BACU003796/1-772 KEAYIRAKYV ERKFVDKYAI SSSPPEQEKK IASKSCEEKR LSISKLGTSE 551 600 ENSTTRP00000015001/1-760 QVRASPQSSV ---------- ---------- ---------- ---------- ENSP00000324287/1-778 QVRASAQSSV ---------- ---------- ---------- ---------- ENSBTAP00000004381/1-780 QIRASPQSSV ---------- ---------- ---------- ---------- bmy_02292T0/1-718 QVRASPQSSV TFFPALFPSY GLLCALLTCM SPVVAVNSDE ARRESLFCPD BACU003796/1-772 QVRASPQSSV TFFPALFPSY GLLCALLTCM SPVVAVNSDE ARRESLFCPD 601 650 ENSTTRP00000015001/1-760 ---------- --------KS NDSGIQQSSD DGRESLPSTV SANSLYEPET ENSP00000324287/1-778 ---------- --------RS NDSGIQQSSD DGRESLPSTV SANSLYEPEG ENSBTAP00000004381/1-780 ---------- --------KS NDSGIQQSSD DGRESLPSTV SANSLYEPEA bmy_02292T0/1-718 ELDSLFSYFD TSSKLRSIKS NDSGIQQSSD DGRESLPSTV SANSLYEP-- BACU003796/1-772 ELDSLFSYFD TSSKLRSIKS NDSGIQQSSD DGRESLPSTV SANSLYEPEA 651 700 ENSTTRP00000015001/1-760 ERQDSSVFLD SQHLNPGLQL YRASYEKNLP KMAEALAHGA DVNWPNSEEN ENSP00000324287/1-778 ERQDSSMFLD SKHLNPGLQL YRASYEKNLP KMAEALAHGA DVNWANSEEN ENSBTAP00000004381/1-780 ERQDSSVFLD SKHLNPGLQL YRASYEKNLP KMAEALAHGA DVNWSNSEEN bmy_02292T0/1-718 ---------- ------GLQL YRASYEKNLP KMAEALAHGA DVNWANSEEN BACU003796/1-772 ERQDSSVFLD SKHLNPGLQL YRASYEKNLP KMAEALARGA DVNWANSEEN 701 750 ENSTTRP00000015001/1-760 KATPLIQAVL GGSLVTCEFL LQNGANVNQR DVQGRGPLHH ATVLGHTGQV ENSP00000324287/1-778 KATPLIQAVL GGSLVTCEFL LQNGANVNQR DVQGRGPLHH ATVLGHTGQV ENSBTAP00000004381/1-780 KATPLIQAVL GGSLVTCEFL LQNGANVNQR DVQGRGPLHH ATVLGHTGQV bmy_02292T0/1-718 KATPLIQAVL GGSLVTCEFL LQNGANVNQR DVQGRGPLHH ATVLGHTGQV BACU003796/1-772 KATPLIQAVL GGSLVTCEFL LQNGANVNQR DVQGRGPLHH ATVLGHTGQV 751 800 ENSTTRP00000015001/1-760 CLFLKRGANQ HATDEEGKDP LSIAVEAANA DIVTLLRLAR MNEEMRESEG ENSP00000324287/1-778 CLFLKRGANQ HATDEEGKDP LSIAVEAANA DIVTLLRLAR MNEEMRESEG ENSBTAP00000004381/1-780 CLFLKRGANQ HATDEEGKDP LSIAVEAANA DIVTLLRLAR MNEEMRESEG bmy_02292T0/1-718 CLFLKRGANQ HATDEEGKDP LSIAVEAANA DIVTLLRLAR MNEEMRESEG BACU003796/1-772 CLFLKRGANQ HATDEEGKDP LSIAVEAANA DIVTLLRLAR MNEEMRESEG 801 850 ENSTTRP00000015001/1-760 LYGQPGDETY QDIFRDFSQM ASNNPEKLNR FQQDSQKF-- ------ ENSP00000324287/1-778 LYGQPGDETY QDIFRDFSQM ASNNPEKLNR FQQDSQKF-- ------ ENSBTAP00000004381/1-780 LYGQPGDETY QDIFRDFSQM ASNNPEKLNR FQQDSQKF-- ------ bmy_02292T0/1-718 LYGQPG---- --------QY STNNHTEM-Q YKKCIQEFIS LQLEHS BACU003796/1-772 LYGQPG---- --------QY STNNHTEM-Q YKKCIQEFIS LQLEDS