KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:23:50 2014 Check: 00 .. Name: ENSP00000230859/1-542 Len: 566 Check: 9175 Weight: 1.00 Name: ENSBTAP00000004384/1-541 Len: 566 Check: 5956 Weight: 1.00 Name: ENSTTRP00000011906/1-540 Len: 566 Check: 3888 Weight: 1.00 Name: BACU014710/1-523 Len: 566 Check: 4678 Weight: 1.00 Name: bmy_21296T0/1-542 Len: 566 Check: 4383 Weight: 1.00 // 1 50 ENSP00000230859/1-542 MSPCPEEAAM RREVVKRIET VVKDLWPTAD ---------- ---------- ENSBTAP00000004384/1-541 MSPCPEEAAM RREVVRRIET VVKDLWPTAD ---------- ---------- ENSTTRP00000011906/1-540 MSPCPEEAAM RREVVKRIET VVKDLWPTAD ---------- ---------- BACU014710/1-523 MSPCPEEAAM RREVVKRIET VVKDLWPTAD VGIPFALLCR YKFMSAPCGR bmy_21296T0/1-542 MSPCPEEAAM RREVVKRIET VVKDLWPTAD ---------- ---------- 51 100 ENSP00000230859/1-542 ----VQIFGS FSTGLYLPTS DIDLVVFGKW ERPPLQLLEQ ALRKHNVAEP ENSBTAP00000004384/1-541 ----VQIFGS FSTGLYLPTS DIDLVVFGKW ERPPLQLLEQ ALRKHNVAEP ENSTTRP00000011906/1-540 ----VQIFGS FSTGLYLPTS DIDLVVFGKW ERPPLQLLEQ ALRKHSVAEP BACU014710/1-523 LCLWVQIFGS FSTGLYLPTS DIDLVVFGKW ERPPLQLLEQ ALRKHSVAEP bmy_21296T0/1-542 ----VQIFGS FSTGLYLPTS DIDLVVFGKW ERPPLQLLEQ ALRKHSVAEP 101 150 ENSP00000230859/1-542 CSIKVLDKAT VPIIKLTDQE TEVKVDISFN METGVRAAEF IKNYMKKYSL ENSBTAP00000004384/1-541 GSIKVLDKAT VPIIKLTDQE TEVKVDISFN METGVRAAEF IKNYMKKYSL ENSTTRP00000011906/1-540 GSIKVLDKAT VPIIKLTDQE TEVKVDISFN METGVRAAEF IKNYMKKYSL BACU014710/1-523 GSIKVLDKAT VPIIKLTDQE TEVKVDISFN METGVRAAEF IKNYMK---- bmy_21296T0/1-542 GSIKVLDKAT VPIIKLTDQE TEVKVDISFN METGVRAAEF IKNYMKKYSL 151 200 ENSP00000230859/1-542 LPYLILVLKQ FLLQRDLNEV FTGGISSYSL ILMAISFLQL HPRIDARRAD ENSBTAP00000004384/1-541 LPYLILVLKQ FLLQRDLNEV FTGGISSYSL ILMAISFLQL HPRIDARRAD ENSTTRP00000011906/1-540 LPYLILVLKQ FLLQRDLNEV FTGGISSYSL ILMAISFLQL HPRIDARRAD BACU014710/1-523 ---------- ---------- ---------- ---------L HPRIDARRAD bmy_21296T0/1-542 LPYLILVLKQ FLLQRDLNEV FTGGISSYSL ILMAISFLQL HPRIDARRAD 201 250 ENSP00000230859/1-542 ENLGMLLVEF FELYGRNFNY LKTGIRIKEG GAYIAKEEIM KAMTSGYRPS ENSBTAP00000004384/1-541 ENLGMLLVEF FELYGRNFNY LKTGIRIKEG GAYIAKEEIM KAMTSGYRPS ENSTTRP00000011906/1-540 ENLGMLLVEF FELYGRNFNY LKTGIRIKEG GAYIAKEEIM KAMTSGYRPS BACU014710/1-523 ENLGMLLVEF FELYGRNFNY LKTGIRIKEG GAYIAKEEIM KAMTSGYRPS bmy_21296T0/1-542 ENLGMLLVEF FELYGRNFNY LKTGIRIKEG GAYIAKEEIM KAMTSGYRPS 251 300 ENSP00000230859/1-542 MLCIEDPLLP GNDVGRSSYG AMQVKQVFDY AYIVLSHAVS PLARSYPNRD ENSBTAP00000004384/1-541 MLCIEDPLLP GNDVGRSSYG AMQVKQVFDY AYIVLSHAVS PLARSYPNRD ENSTTRP00000011906/1-540 MLCIEDPLLP GNDVGRSSYG AMQVKQVFDY AYIVLSHAVS PLARSYPNRD BACU014710/1-523 MLCIEDPLLP GNDVGRSSYG AMQVKQVFDY AYIVLSHAVS PLARSYPNRD bmy_21296T0/1-542 MLCIEDPLLP GNDVGRSSYG AMQVKQVFDY AYIVLSHAVS PLARSYPNRD 301 350 ENSP00000230859/1-542 AESTLGRIIK VTQEVIDYRR WIKEKWGSKA HPSPGMDSRI KIKERIATCN ENSBTAP00000004384/1-541 SESTLGRIIK VTQEVIDYRT WIKEKWGGRV HAAPDPDNRV KTAERMGTCE ENSTTRP00000011906/1-540 SESTLGRIIK VTQEVIDYRA WIKEKWGGRA HAPPDADDRI KTTERTGTCE BACU014710/1-523 SESTLGRIIK VTQEVIDYRA WIKEKWGSRA HAAPDPDDRI KTAERVGACE bmy_21296T0/1-542 SESTLGRIIK VTQEVIDYRA WIKEKWGSRA HAAPDPDDRI KTTERVGACE 351 400 ENSP00000230859/1-542 GEQTQNREPE SPYGQRLTLS LSSPQLLSSG SSASSVSSLS GSDVDSDTPP ENSBTAP00000004384/1-541 GDQPPRRDPE PPLGPRLPLP LPGPQLRSSG SSASSVSSLS GSDIDSDTPP ENSTTRP00000011906/1-540 GEQPPRRDPE SPCGPRLALS LPSPQLLSSG SSASSVSSLS GSDIDSDTPP BACU014710/1-523 GGQPPRRDPE SPCGPRLALA LPSPQLLSSG SSASSVSSLS GSDIDSDTPP bmy_21296T0/1-542 GEQPPRRDPE SPCGPRLALS LPSPQLLSSG SSASSVSSLS GSDIDSDTPP 401 450 ENSP00000230859/1-542 CTTPSVYQFS LQAPAPLMAG LPTALPMPSG KPQPTTSRTL IMTTNNQTRF ENSBTAP00000004384/1-541 CTTPSVYQFS LQAPTPLLAS LPAALPMASG KPQSTTSRTL VMTTNTQTRF ENSTTRP00000011906/1-540 CPTPSVRQFS LQVPAPLPAS LPAALPVPSG RPQSA--RTL VMXXXXXTRF BACU014710/1-523 CPTPSVRQFS LQAPAPLPAS LPAALPVPSG RPQPATPRTL VMATNTQPRF bmy_21296T0/1-542 CPTPSVRQFS LQAPAPLPAS LPAALPVPSG RPQPATPRTL VMATNTQTRF 451 500 ENSP00000230859/1-542 TIPPPTLGVA PVPCRQAGVE GTASLKAVHH MSSPAIPSAS PNPLSSPHLY ENSBTAP00000004384/1-541 TIPPPTLGVA PVPCRQAGIE AAPALKAVHH VSSPAIPSAS PNPLSSPHLY ENSTTRP00000011906/1-540 TIPPPTLGVA PVPCRPAGIE GAPVLKAVHH VSSPAVPSAP PNALSSPHLY BACU014710/1-523 TIPPPTLGVA PVPCRPAGIE GAPALKAVHH VSSPAVPSAP PNALASPHLY bmy_21296T0/1-542 TIPPPTLGVA PVPCRPAGIE GAPALKAVHH VSSPAVPSAP PNALSSPHLY 501 550 ENSP00000230859/1-542 HKQHNGMKLS MKGSHGHTQG GGYSSVGSGG VRPPVGNRGH HQYNRTGWRR ENSBTAP00000004384/1-541 HK-HSGMKLS MKGSHSHGQG GSYSSVGTGG VRPPVGNRGH HQYNRTGWRR ENSTTRP00000011906/1-540 HKQHSGMKLS MKGSHSHGQG GSYSAVGSGG VRPPVGNRGH HQYNRAGWRR BACU014710/1-523 HKQHSGMKLS MKGSHSHGQG GSYSAVGSGG VRPPVGNRGH HQYNRAGWRR bmy_21296T0/1-542 HKQHSGMKLS MKGSHSHGQG GSYSAVGSGG VRPPVGNRGH HQYNRAGWRR 551 600 ENSP00000230859/1-542 KKHTHTRDSL PVSLSR ENSBTAP00000004384/1-541 KKHTHTRDSL PVSLSR ENSTTRP00000011906/1-540 RKHTHTRDSL PVSLSR BACU014710/1-523 RKHTHTRDSL PVSLSR bmy_21296T0/1-542 RKHTHTRDSL PVSLSR