KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:23:52 2014 Check: 00 .. Name: ENSTTRP00000010262/1-460 Len: 671 Check: 1884 Weight: 1.00 Name: ENSP00000335592/1-462 Len: 671 Check: 3630 Weight: 1.00 Name: ENSBTAP00000004397/1-462 Len: 671 Check: 431 Weight: 1.00 Name: bmy_08169T0/1-610 Len: 671 Check: 4803 Weight: 1.00 Name: BACU004690/1-630 Len: 671 Check: 5063 Weight: 1.00 // 1 50 ENSTTRP00000010262/1-460 -------MDN GMFSSFI--M IKNLLLF--- ---------- ---------- ENSP00000335592/1-462 -------MDN GMFSGFI--M IKNLLLF--- ---------- ---------- ENSBTAP00000004397/1-462 -------MDN GMFSSFI--M IKNLLLF--- ---------- ---------- bmy_08169T0/1-610 MGLLLMILAS AVLGSFLTLL TQFLLLYRKQ PEPPPDEAAR AADGFRYIKP BACU004690/1-630 MGLLLMILAS VVLGSFLTLL TQFLLLYRKQ PEPPPDEAAR AADGFRYIKP 51 100 ENSTTRP00000010262/1-460 ---------- ---------- ---------- ---------- --CISMNLAS ENSP00000335592/1-462 ---------- ---------- ---------- ---------- --CISMNLSS ENSBTAP00000004397/1-462 ---------- ---------- ---------- ---------- --CISMNLAS bmy_08169T0/1-610 VPDLPLREYL YGGGGAEEPS GGPPEGGTTP APETPAPPTR ETCYFLNATI BACU004690/1-630 VPDLALREYL YGGGGAEEPS SVPPEGGTTP APETPAPPTR ETCYFLNATI 101 150 ENSTTRP00000010262/1-460 HFGFSQMP-- -------TSS VKDETNDNIT IFT--RILDG LLDGYDNRLR ENSP00000335592/1-462 HFGFSQMP-- -------TSS VKDETNDNIT IFT--RILDG LLDGYDNRLR ENSBTAP00000004397/1-462 HFGFSQMP-- -------TSS VKAETDDNIT IFT--RILDG LLDGYDNRLR bmy_08169T0/1-610 LFLFRELRDT ALARRWVTKK IKVEFEELLQ TKTAGRLLEG L------SLR BACU004690/1-630 LFLFRELRDT ALARRWVTKK IKVEFEELLQ TKTAGRLLEG L------SLR 151 200 ENSTTRP00000010262/1-460 PV-LGERITQ VRTDIYVTSF GPVS------ ---------- ------DTEM ENSP00000335592/1-462 PG-LGERITQ VRTDIYVTSF GPVS------ ---------- ------DTEM ENSBTAP00000004397/1-462 PG-LGERITQ VRTDIYVTSF GPVS------ ---------- ------DTEM bmy_08169T0/1-610 DVFLGETVPF IKTIRLLRPV VPSATGEPDV PEGEALPATS PEELAFEAEV BACU004690/1-630 DVFLGETVPF IKTIRLLRPV VPSATGEPDV PEGEALPATS PEELAFEAEV 201 250 ENSTTRP00000010262/1-460 EYT------- -IDVFFRQS- ---------- ---------- ---------- ENSP00000335592/1-462 EYT------- -IDVFFRQS- ---------- ---------- ---------- ENSBTAP00000004397/1-462 EYT------- -IDVFFRQS- ---------- ---------- ---------- bmy_08169T0/1-610 EYSGGFHLAI DVDLVFGKSA YLFVKLSRVV GRLRFVLTRV PFTHWFFSFV BACU004690/1-630 EYSGGFHLAI DVDLVFGKSA YLFVKLSRVV GRLRFVLTRV PFTHWFFSFV 251 300 ENSTTRP00000010262/1-460 ---------- ---------- ---------- ---------- ---------- ENSP00000335592/1-462 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000004397/1-462 ---------- ---------- ---------- ---------- ---------- bmy_08169T0/1-610 EDPLIDFEVR SQFEGRPMPQ LTSIIVNQLK KVIKRKHTLP SYKISFVKAE BACU004690/1-630 EDPLIDFEVR SQFEGRPMPQ LTSIIINQLK KVIKRKHTLP SYKI------ 301 350 ENSTTRP00000010262/1-460 ---------- WKDERLRFKG PMQRLPLNNL LASKIWTPDT FFHNGKKSIA ENSP00000335592/1-462 ---------- WKDERLRFKG PMQRLPLNNL LASKIWTPDT FFHNGKKSIA ENSBTAP00000004397/1-462 ---------- WKDERLRFKG PMQRLPLNNL LASKIWTPDT FFHNGKKSIA bmy_08169T0/1-610 SFNLIDHRLR WKDERLRFKG LMQRLPLNNL LASKIWTPDT FFHNGKKFIA BACU004690/1-630 ---------- ---------- --------SL LASKIWTPDT FFHNGKKSIA 351 400 ENSTTRP00000010262/1-460 HNMTTPNKLL RLEDDGTLLY TMRLTISAEC PMQLEDFPMD AHACPLKFGS ENSP00000335592/1-462 HNMTTPNKLL RLEDDGTLLY TMRLTISAEC PMQLEDFPMD AHACPLKFGS ENSBTAP00000004397/1-462 HNMTTPNKLL RLEDDGTLLY TMRLTISAEC PMQLEDFPMD AHACPLKFGS bmy_08169T0/1-610 HNMTMPNKLL RLEDDATLLY TMRLTISAEC PMQLEDFPMD AHACPLKFGS BACU004690/1-630 HNMTTPNQLL RLEDDATLLY TMCLTISAEC PMQLEDFPMD AHACPLKFGS 401 450 ENSTTRP00000010262/1-460 YAYPNSEVVY VWTNGTTKSV VVAEDGSRLN QYHLMGQTVG TE-NISTSTG ENSP00000335592/1-462 YAYPNSEVVY VWTNGSTKSV VVAEDGSRLN QYHLMGQTVG TE-NISTSTG ENSBTAP00000004397/1-462 YAYPNSEVIY VWTNGTAKSV VVAEDGSRLN QYHLMGQTVG TE-NISTSTG bmy_08169T0/1-610 YAYPNSEVVY VWTNGTTKSV VVAEDGSRLN QYHLMGQTVG TEKNISTSTG BACU004690/1-630 YAYPNSKVVY VWTNGTTKSV VVAEDGSRLN QYHLMGQTVG TEKNISTSKG 451 500 ENSTTRP00000010262/1-460 EYTIMTAHFH LKRKIGYFVI QTYLPCIMTV ILSQVSFWLN RESVPARTVF ENSP00000335592/1-462 EYTIMTAHFH LKRKIGYFVI QTYLPCIMTV ILSQVSFWLN RESVPARTVF ENSBTAP00000004397/1-462 EYTIMTAHFH LKRKIGYFVI QTYLPCIMTV ILSQVSFWLN RESVPARTVF bmy_08169T0/1-610 EYTIMTAHFH LKRKIGYFVI QTYLPCVMTV ILSQVSFWLN RESFPARTVF BACU004690/1-630 EYTIMTAHFH LKRKIGYFVI QTCLPCIMTV ILSQVSFWLN RESFPARTVF 501 550 ENSTTRP00000010262/1-460 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX FIAVCYAFV- SALIEF-TVN ENSP00000335592/1-462 GVTTVLTMTT LSISARNSLP KVAYATAMDW FIAVCYAFVF SALIEFATVN ENSBTAP00000004397/1-462 GVTTVLTMTT LSISARNSLP KVAYATAMDW FIAVCYAFVF SALIEFATVN bmy_08169T0/1-610 GLTTVLTMTT LSISARNSLP KVAYATAMDW FIAVCYAFVF SALIEFATVN BACU004690/1-630 GLTTVLTMTT LSISAQNSLP KVAYATAMDW FIAVCYAFVF SALIEFATVN 551 600 ENSTTRP00000010262/1-460 YFTKRGWAWD GKKALEAAKI KKKERELTLN KSTNAYTTGK MTHPPNIPKE ENSP00000335592/1-462 YFTKRGWAWD GKKALEAAKI KKK-REVILN KSTNAFTTGK MSHPPNIPKE ENSBTAP00000004397/1-462 YFTKRGWAWD GKKALEAAKI KKKERELTIN KSTNAYTTGK MTHPPNIPKE bmy_08169T0/1-610 YFTKRGWAWD GRKALEAAKI KKKECELTLN KSTNAYTTGK MTHPPKHRKG BACU004690/1-630 YFTKRGWAWD GKKALEAAKI KKKECELTLN KSTNAYTTGK MTQPQNIAKE 601 650 ENSTTRP00000010262/1-460 QTPSGTSNAS SASVKP-EDK TSENKKTYNS ISKIDKMSRI IFPVLFGTFN ENSP00000335592/1-462 QTPAGTSNTT SVSVKPSEEK TSESKKTYNS ISKIDKMSRI VFPVLFGTFN ENSBTAP00000004397/1-462 QTPAGTTNAS SASVKP-EDK ASENKKTYNS ISKIDKMSRI IFPLLFGTFN bmy_08169T0/1-610 ADPC------ ---------- --RDLKCLFS LSKT------ ---------- BACU004690/1-630 QAPAGTSNAS SASVKP-EDK TSENKKTYNS ISKIDKMSRI IFPVLFGTFN 651 700 ENSTTRP00000010262/1-460 LVYWATYLNR EPVIKGATSP K ENSP00000335592/1-462 LVYWATYLNR EPVIKGAASP K ENSBTAP00000004397/1-462 LVYWATYLNR EPVIKGATSP K bmy_08169T0/1-610 ---------- ---------- - BACU004690/1-630 LVYWATYLNR EPVIKGATSP K