KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:23:53 2014 Check: 00 .. Name: BACU003333/1-1350 Len: 1351 Check: 7754 Weight: 1.00 Name: bmy_01608T0/1-793 Len: 1351 Check: 7769 Weight: 1.00 Name: ENSTTRP00000001448/1-794 Len: 1351 Check: 1764 Weight: 1.00 Name: ENSBTAP00000004398/1-793 Len: 1351 Check: 8266 Weight: 1.00 Name: ENSP00000215793/1-793 Len: 1351 Check: 9486 Weight: 1.00 // 1 50 BACU003333/1-1350 MPAGPVQAVP PPPPAATEPK QPTEEEASSK EDSTPSKPVV GIIYPPPEVR bmy_01608T0/1-793 MPAGPVQAVP PPPPAATEPK QPTEEEASSK EDSTPSKPVV GIIYPPPEVR ENSTTRP00000001448/1-794 MPAGPVQAVP PPPPAATEPK QPTEEEASSK EDSTPSKPVV GIIYPPPEVR ENSBTAP00000004398/1-793 MPAGPVQAVP PPPPAATEPK QPTEEEASSK EDSTPSKPVV GIIYPPPEVR ENSP00000215793/1-793 MPAGPVQAVP PPPPVPTEPK QPTEEEASSK EDSAPSKPVV GIIYPPPEVR 51 100 BACU003333/1-1350 NIVDKTASFV ARNGPEFEAR IRQNEINNPK FNFLNPNDPY HAYYRHKVSE bmy_01608T0/1-793 NIVDKTASFV ARNGPEFEAR IRQNEINNPK FNFLNPNDPY HAYYRHKVSE ENSTTRP00000001448/1-794 NIVDKTASFV ARNGPEFEAR IRQNEINNPK FNFLNPNDPY HAYYRHKVSE ENSBTAP00000004398/1-793 NIVDKTASFV ARNGPEFEAR IRQNEINNPK FNFLNPNDPY HAYYRHKVSE ENSP00000215793/1-793 NIVDKTASFV ARNGPEFEAR IRQNEINNPK FNFLNPNDPY HAYYRHKVSE 101 150 BACU003333/1-1350 FKEGKAQEPS AAIPKVM-QQ QQQATQQQLP QKVQAQVIQE TIVPKEPPPE bmy_01608T0/1-793 FKEGKAQEPS AAIPKVM-QQ QQQATQQQLP QKVQAQVIQE TIVPKEPPPE ENSTTRP00000001448/1-794 FKEGKAQEPS AAIPKVMQQQ QQQATQQQLP QKVQAQVIQE TIVPKEPPPE ENSBTAP00000004398/1-793 FKEGKAQEPS AAIPKVM-QQ QQQASQQQLP QKVQAQVIQE TIVPKEPPPE ENSP00000215793/1-793 FKEGKAQEPS AAIPKVM-QQ QQQTTQQQLP QKVQAQVIQE TIVPKEPPPE 151 200 BACU003333/1-1350 FEFIADPPSI SAFDLDVVKL TAQFVARNGR QFLTQLMQKE QRNYQFDFLR bmy_01608T0/1-793 FEFIADPPSI SAFDLDVVKL TAQFVARNGR QFLTQLMQKE QRNYQFDFLR ENSTTRP00000001448/1-794 FEFIADPPSI SAFDLDVVKL TAQFVARNGR QFLTQLMQKE QRNYQFDFLR ENSBTAP00000004398/1-793 FEFIADPPSI SAFDLDVVKL TAQFVARNGR QFLTQLMQKE QRNYQFDFLR ENSP00000215793/1-793 FEFIADPPSI SAFDLDVVKL TAQFVARNGR QFLTQLMQKE QRNYQFDFLR 201 250 BACU003333/1-1350 PQHSLFNYFT KLVEQYTKIL IPPKGLFTKL KKEAENPREV LDQVCYRVEW bmy_01608T0/1-793 PQHSLFNYFT KLVEQYTKIL IPPKGLFTKL KKEAENPREV LDQVCYRVEW ENSTTRP00000001448/1-794 PQHSLFNYFT KLVEQYTKIL IPPKGLFTKL KKEAENPREV LDQVCYRVEW ENSBTAP00000004398/1-793 PQHSLFNYFT KLVEQYTKIL IPPKGLFTKL KKEAENPREV LDQVCYRVEW ENSP00000215793/1-793 PQHSLFNYFT KLVEQYTKIL IPPKGLFSKL KKEAENPREV LDQVCYRVEW 251 300 BACU003333/1-1350 AKFQERERKK EEEEKEKERV AYAQIDWHDF VVVETVDFQP NEQGNFPPPT bmy_01608T0/1-793 AKFQERERKK EEEEKEKERV AYAQIDWHDF VVVETVDFQP NEQGNFPPPT ENSTTRP00000001448/1-794 AKFQERERKK EEEEKEKERV AYAQIDWHDF VVVETVDFQP NEQGNFPPPT ENSBTAP00000004398/1-793 AKFQERERKK EEEEKEKERV AYAQIDWHDF VVVETVDFQP NEQGNFPPPT ENSP00000215793/1-793 AKFQERERKK EEEEKEKERV AYAQIDWHDF VVVETVDFQP NEQGNFPPPT 301 350 BACU003333/1-1350 TPEELGARIL IQERYEKFGE SEEVEMEVES DEEDEKQEKA EEPPSQLDQD bmy_01608T0/1-793 TPEELGARIL IQERYEKFGE SEEVEMEVES DEEDEKQEKA EEPPSQLDQD ENSTTRP00000001448/1-794 TPEELGARIL IQERYEKFGE SEEVEMEVES DEEDEKQEKA EEPPSQLDQD ENSBTAP00000004398/1-793 TPEELGARIL IQERYEKFGE SEEVEMEVES DEEDEKQEKA EEPPSQLDQD ENSP00000215793/1-793 TPEELGARIL IQERYEKFGE SEEVEMEVES DEEDDKQEKA EEPPSQLDQD 351 400 BACU003333/1-1350 TQVQDMDEGS DDEEEGQKVP PPPETPMPPP LPPTPDQVIV RKDYDPKASK bmy_01608T0/1-793 TQVQDMDEGS DDEEEGQKVP PPPETPMPPP LPPTPDQVIV RKDYDPKASK ENSTTRP00000001448/1-794 TQVQDMDEGS DDEEEGQKVP PPPETPMPPP LPPTPDQVIV RKDYDPKASK ENSBTAP00000004398/1-793 TQVQDMDEGS DDEEEGQKVP PPPETPMPPP LPPTPDQVIV RKDYDPKASK ENSP00000215793/1-793 TQVQDMDEGS DDEEEGQKVP PPPETPMPPP LPPTPDQVIV RKDYDPKASK 401 450 BACU003333/1-1350 PLPPAPAPDE YLVSPITGEK IPASKMQEHM RIGLLDPRWL EQRDRSIREK bmy_01608T0/1-793 PLPPAPAPDE YLVSPITGEK IPASKMQEHM RIGLLDPRWL EQRDRSIREK ENSTTRP00000001448/1-794 PLPPAPAPDE YLVSPITGEK IPASKMQEHM RIGLLDPRWL EQRDRSLRDK ENSBTAP00000004398/1-793 PLPPAPAPDE YLVSPITGEK IPASKMQEHM RIGLLDPRWL EQRDRSIREK ENSP00000215793/1-793 PLPPAPAPDE YLVSPITGEK IPASKMQEHM RIGLLDPRWL EQRDRSIREK 451 500 BACU003333/1-1350 QSDDEVYAPG LDIESSLKQL AERRTDIFGV EETAIGKKIG EEEIQKPEEK bmy_01608T0/1-793 QSDDEVYAPG LDIESSLKQL AERRTDIFGV EETAIGKKIG EEEIQKPEEK ENSTTRP00000001448/1-794 QSDDEVYAPG LDIESSLKQL AERRTDIFGV EETAIGKKIG EEEIQKPEEK ENSBTAP00000004398/1-793 QSDDEVYAPG LDIESSLKQL AERRTDIFGV EETAIGKKIG EEEIQKPEEK ENSP00000215793/1-793 QSDDEVYAPG LDIESSLKQL AERRTDIFGV EETAIGKKIG EEEIQKPEEK 501 550 BACU003333/1-1350 VTWDGHSGSM ARTQQAAQAN ITLQEQIEAI HKAKGLVPED DTKEKIGPSK bmy_01608T0/1-793 VTWDGHSGSM ARTQQAAQAN ITLQEQIEAI HKAKGLVPED DTKEKIGPSK ENSTTRP00000001448/1-794 VTWDGHSGSM ARTQQAAQAN ITLQEQIEAI HKAKGLVPED DTKEKIGPSK ENSBTAP00000004398/1-793 VTWDGHSGSM ARTQQAAQAN ITLQEQIEAI HKAKGLVPED DTKEKIGPSK ENSP00000215793/1-793 VTWDGHSGSM ARTQQAAQAN ITLQEQIEAI HKAKGLVPED DTKEKIGPSK 551 600 BACU003333/1-1350 PNEIPQQPPP PSSATNIPSS APPITSVPRP PAMPPPVRTT VVSAVPVMPR bmy_01608T0/1-793 PNEIPQQPPP PSSATNIPSS APPITSVPRP PAMPPPVRTT VVSAVPVMPR ENSTTRP00000001448/1-794 PNEIPQQPPP PSSATNIPSS APPITSVPRP PAMPPPVRTT VVSAVPVMPR ENSBTAP00000004398/1-793 PNEIPQQPPP PSSATNIPSS APPITSVPRP PAMPPPVRTT VVSAVPVMPR ENSP00000215793/1-793 PNEIPQQPPP PSSATNIPSS APPITSVPRP PTMPPPVRTT VVSAVPVMPR 601 650 BACU003333/1-1350 PPMASVVRLP PGSVIAPMPP IIHAPRINVV PMPPSAPPIM APRPPPMIVP bmy_01608T0/1-793 PPMASVVRLP PGSVIAPMPP IIHAPRINVV PMPPSAPPIM APRPPPMIVP ENSTTRP00000001448/1-794 PPMASVVRLP PGSVIAPMPP IIHAPRINVV PMPPSAPPIM APRPPPMIVP ENSBTAP00000004398/1-793 PPMASVVRLP PGSVIAPMPP IIHAPRINVV PMPPSAPPIM APRPPPMIVP ENSP00000215793/1-793 PPMASVVRLP PGSVIAPMPP IIHAPRINVV PMPPSAPPIM APRPPPMIVP 651 700 BACU003333/1-1350 TAFVPAPPVA PVPAPAPMPP VHPPPPMEDE PASKKLKTED SLMPEEEFLR bmy_01608T0/1-793 TAFVPAPPVA PVPAPAPMPP VHPPPPMEDE PASKKLKTED SLMPEEEFLR ENSTTRP00000001448/1-794 TAFVPAPPVA PVPAPAPMPP VHPPPPMEDE PASKKLKTED SLMPEEEFLR ENSBTAP00000004398/1-793 TAFVPAPPVA PVPAPAPMPP VHPPPPMEDE PASKKLKTED SLMPEEEFLR ENSP00000215793/1-793 TAFVPAPPVA PVPAPAPMPP VHPPPPMEDE PTSKKLKTED SLMPEEEFLR 701 750 BACU003333/1-1350 RNKGPVSIKV QVPNMQDKTE WKLNGQVLVF TLPLTDQVSV IKVKIHEATG bmy_01608T0/1-793 RNKGPVSIKV QVPNMQDKTE WKLNGQVLVF TLPLTDQVSV IKVKIHEATG ENSTTRP00000001448/1-794 RNKGPVSIKV QVPNMQDKTE WKLNGQVLVF TLPLTDQVSV IKVKIHEATG ENSBTAP00000004398/1-793 RNKGPVSIKV QVPNMQDKTE WKLNGQVLVF TLPLTDQVSV IKVKIHEATG ENSP00000215793/1-793 RNKGPVSIKV QVPNMQDKTE WKLNGQVLVF TLPLTDQVSV IKVKIHEATG 751 800 BACU003333/1-1350 MPAGKQKLQY EVSWVSVVLA PAVVREANKS LVESEEWGDT WVWSFESILE bmy_01608T0/1-793 MPAGKQKLQY E--------- ---------- ---------- ---------- ENSTTRP00000001448/1-794 MPAGKQKLQY E--------- ---------- ---------- ---------- ENSBTAP00000004398/1-793 MPAGKQKLQY E--------- ---------- ---------- ---------- ENSP00000215793/1-793 MPAGKQKLQY E--------- ---------- ---------- ---------- 801 850 BACU003333/1-1350 VMMLVGGAGA AADELSSLGS DSEANGFAER RIDKFGFIVG SQGAEGATGL bmy_01608T0/1-793 --------GI FIKDSNSLAY YNMANG---- ---------- ---------- ENSTTRP00000001448/1-794 --------GI FIKDSNSLAY YNMANG---- ---------- ---------- ENSBTAP00000004398/1-793 --------GI FIKDSNSLAY YNMANG---- ---------- ---------- ENSP00000215793/1-793 --------GI FIKDSNSLAY YNMANG---- ---------- ---------- 851 900 BACU003333/1-1350 LKLEFPTQLQ SAQCFRPDKF QRKIRFGSPV GVLGPQTRLD LVKEGASTPA bmy_01608T0/1-793 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000001448/1-794 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000004398/1-793 ---------- ---------- ---------- ---------- ---------- ENSP00000215793/1-793 ---------- ---------- ---------- ---------- ---------- 901 950 BACU003333/1-1350 AALGRQEEVP LEVLRQRESK WLDMLNNWDK WMAKKHKKIR LRCQKGIPPS bmy_01608T0/1-793 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000001448/1-794 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000004398/1-793 ---------- ---------- ---------- ---------- ---------- ENSP00000215793/1-793 ---------- ---------- ---------- ---------- ---------- 951 1000 BACU003333/1-1350 LRGRAWQYLS GGKVKLQQNP GKFDELDMSP GDPKWLDVIE RDLHRQFPFH bmy_01608T0/1-793 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000001448/1-794 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000004398/1-793 ---------- ---------- ---------- ---------- ---------- ENSP00000215793/1-793 ---------- ---------- ---------- ---------- ---------- 1001 1050 BACU003333/1-1350 EMFVSRGGHG QQDLFRVLKA YTLYRPEEGY CQAQAPIAAV LLMHMPAEQA bmy_01608T0/1-793 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000001448/1-794 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000004398/1-793 ---------- ---------- ---------- ---------- ---------- ENSP00000215793/1-793 ---------- ---------- ---------- ---------- ---------- 1051 1100 BACU003333/1-1350 FWCLVQICEK YLPGYYSEKL EAIQLDGEIL FSLLQKVSPV AHKHLSQQKI bmy_01608T0/1-793 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000001448/1-794 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000004398/1-793 ---------- ---------- ---------- ---------- ---------- ENSP00000215793/1-793 ---------- ---------- ---------- ---------- ---------- 1101 1150 BACU003333/1-1350 DPLLYMTEWF MCAFSRTLPW SSVLRVWDMF FCEGVKIIFR VGLVLLKHAL bmy_01608T0/1-793 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000001448/1-794 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000004398/1-793 ---------- ---------- ---------- ---------- ---------- ENSP00000215793/1-793 ---------- ---------- ---------- ---------- ---------- 1151 1200 BACU003333/1-1350 GSPEKLKACQ GQYETIERLR SLSPKIMQEA FLVQEVVELP VTERQIEREH bmy_01608T0/1-793 ---------- ---------- ---------- ----AIIHLA LKER------ ENSTTRP00000001448/1-794 ---------- ---------- ---------- ----AIIHLA LKER------ ENSBTAP00000004398/1-793 ---------- ---------- ---------- ----AVIHLA LKER------ ENSP00000215793/1-793 ---------- ---------- ---------- ----AVIHLA LKER------ 1201 1250 BACU003333/1-1350 LIQLRRWQET RGELQCHSPP RLHGAKAILE AEPGPWPTLQ PSPSIRLPPD bmy_01608T0/1-793 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000001448/1-794 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000004398/1-793 ---------- ---------- ---------- ---------- ---------- ENSP00000215793/1-793 ---------- ---------- ---------- ---------- ---------- 1251 1300 BACU003333/1-1350 APLPGSKGKY KPPKQVQKEQ RKQAKASGQR DKPPTPSQAK VAAAAGDTCP bmy_01608T0/1-793 ---------- ---------- -------GGR KK-------- ---------- ENSTTRP00000001448/1-794 ---------- ---------- -------GGR KK-------- ---------- ENSBTAP00000004398/1-793 ---------- ---------- -------GGR KK-------- ---------- ENSP00000215793/1-793 ---------- ---------- -------GGR KK-------- ---------- 1301 1350 BACU003333/1-1350 PRDVPPKDLV YQDPQDSAPQ DSAPQDSAPQ DSAYHCSQES LTSQESEDTY bmy_01608T0/1-793 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000001448/1-794 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000004398/1-793 ---------- ---------- ---------- ---------- ---------- ENSP00000215793/1-793 ---------- ---------- ---------- ---------- ---------- 1351 1400 BACU003333/1-1350 L bmy_01608T0/1-793 - ENSTTRP00000001448/1-794 - ENSBTAP00000004398/1-793 - ENSP00000215793/1-793 -