KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:23:54 2014 Check: 00 .. Name: bmy_07239T0/1-499 Len: 780 Check: 3983 Weight: 1.00 Name: BACU004740/1-721 Len: 780 Check: 7763 Weight: 1.00 Name: ENSTTRP00000011999/1-708 Len: 780 Check: 4005 Weight: 1.00 Name: ENSP00000352676/1-708 Len: 780 Check: 5219 Weight: 1.00 Name: ENSBTAP00000004401/1-708 Len: 780 Check: 4767 Weight: 1.00 // 1 50 bmy_07239T0/1-499 MDDSYF---- ---------- ---ASVMRA- ---------- ---------- BACU004740/1-721 MSERGIKWAC EYCTYENWPS AIKCTMCRAQ RPSGTIITED PFKSGSSDVG ENSTTRP00000011999/1-708 MSERGIKWAC EYCTYENWPS AIKCTMCRAQ RPSGTIITED PFKSGSSDVG ENSP00000352676/1-708 MSERGIKWAC EYCTYENWPS AIKCTMCRAQ RPSGTIITED PFKSGSSDVG ENSBTAP00000004401/1-708 MSERGIKWAC EYCTYENWPS AIKCTMCRAQ RPSGTIITED PFKSGSSDVG 51 100 bmy_07239T0/1-499 ---------- ---PEIVPAD S--------- ---------- ---------- BACU004740/1-721 RDWDPSGTEG GSSPLICPDS SARPRVKSSY SMENANKWSC HMCTYLNWPR ENSTTRP00000011999/1-708 RDWDPSGTEG GSSPLICPDS SARPRVKSSY SMENANKWSC HMCTYLNWPR ENSP00000352676/1-708 RDWDPSSTEG GSSPLICPDS SARPRVKSSY SMENANKWSC HMCTYLNWPR ENSBTAP00000004401/1-708 RDWDPSSTEG GSSPLICPDS SARPRVKSSY SMENANKWSC HMCTYLNWPR 101 150 bmy_07239T0/1-499 ---------- KSTLTPQHKP ---------- ------C--- ---------- BACU004740/1-721 AIRCTQCLSQ RRTRSPTESP QSSGSGSRPV AFSVDPCEEY NDRNKLNTRT ENSTTRP00000011999/1-708 AIRCTQCLSQ RRTRSPTESP QSSGSGSRPV AFSVDPCEEY NDRNKLNTRT ENSP00000352676/1-708 AIRCTQCLSQ RRTRSPTESP QSSGSGSRPV AFSVDPCEEY NDRNKLNTRT ENSBTAP00000004401/1-708 AIRCTQCLSQ RRTRSPTESP QSSGSGSRPV AFSVDPCEEY NDRNKLNTRT 151 200 bmy_07239T0/1-499 ----CDVTA- ---------- ---------- -TIELQGSVE LAHV------ BACU004740/1-721 QHWTCSICTY ENWAKAKKCV VCDHPRPNNI EAIELAETEE ASSIINEQDR ENSTTRP00000011999/1-708 QHWTCSICTY ENWAKAKKCV VCDHPRPNNI EAIELAETEE ASSIINEQDR ENSP00000352676/1-708 QHWTCSVCTY ENWAKAKRCV VCDHPRPNNI EAIELAETEE ASSIINEQDR ENSBTAP00000004401/1-708 QHWTCSICTY ENWAKAKKCV VCDHPRPNNI EAIEFAETEE ASSIINEQDR 201 250 bmy_07239T0/1-499 ---------G SAHLNDAPGS RKHRESEF-- -RVNATGLC- ---------- BACU004740/1-721 ARWRGSCSSG NSQRRSPPTT KRDSEMKMDF QRIELAGAVG SKEELEVDFK ENSTTRP00000011999/1-708 ARWRGSCSSG NSQRRSPPTT KRDSEMKMDF QRIELAGAVG SKEELEVDFK ENSP00000352676/1-708 ARWRGSCSSG NSQRRSPPAT KRDSEVKMDF QRIELAGAVG SKEELEVDFK ENSBTAP00000004401/1-708 ARWRGSCSSG NSQRRSPPTM KRDSEVKMDF QRIELAGAVG SKEELEVDFK 251 300 bmy_07239T0/1-499 FLKKXKIELF SVLXLVL--- ---------- ---------- ---------- BACU004740/1-721 KLKQIKNRMK KTDWLFLNAC VVLRYSVWSN ERSVVHSPKQ NQINFNGRKS ENSTTRP00000011999/1-708 KLKQIKNRMK KTDWLFLNAC V--------- ---------- ---------- ENSP00000352676/1-708 KLKQIKNRMK KTDWLFLNAC V--------- ---------- ---------- ENSBTAP00000004401/1-708 KLKQIKNRMK KTDWLFLNAC V--------- ---------- ---------- 301 350 bmy_07239T0/1-499 ---------- ---------- ---------- ---------- ---GVVEGDL BACU004740/1-721 RRRAPEIVPA DSKSTLTPQH KPCCDVTATI ELQGSVELAH VGSGVVEGDL ENSTTRP00000011999/1-708 ---------- ---------- ---------- ---------- ---GVVEGDL ENSP00000352676/1-708 ---------- ---------- ---------- ---------- ---GVVEGDL ENSBTAP00000004401/1-708 ---------- ---------- ---------- ---------- ---GVVEGDL 351 400 bmy_07239T0/1-499 AAIEAYKSSG GDIARQLTAD EVRLLNRPSA FDVGYTLVHL AIRFQRQDML BACU004740/1-721 AAIEAYKSSG GDIARQLTAD EVRLLNRPSA FDVGYTLVHL AIRFQRQDML ENSTTRP00000011999/1-708 AAIEAYKSSG GDIARQLTAD EVRLLNRPSA FDVGYTLVHL AIRFQRQDML ENSP00000352676/1-708 AAIEAYKSSG GDIARQLTAD EVRLLNRPSA FDVGYTLVHL AIRFQRQDML ENSBTAP00000004401/1-708 AAIEAYKSSG GDIARQLTAD EVRLLNRPSA FDVGYTLVHL AIRFQRQDML 401 450 bmy_07239T0/1-499 AILLTEVSQQ AAKCIPAMVC PELTEQIRRE IAASLHQRKG DFACYFLTDL BACU004740/1-721 AILLTEF--- -LNVLDSIFY P--------- ---------- -----LFKMT ENSTTRP00000011999/1-708 AILLTEVSQQ AAKCIPAMVC PELTEQIRRE IAASLHQRKG DFACYFLTDL ENSP00000352676/1-708 AILLTEVSQQ AAKCIPAMVC PELTEQIRRE IAASLHQRKG DFACYFLTDL ENSBTAP00000004401/1-708 AILLTEVSQQ AAKCIPAMVC PELTEQIRRE IAASLHQRKG DFACYFLTDL 451 500 bmy_07239T0/1-499 VTFTLPADIE DLPPTVQEKL FDEVLDRDVQ K--------- ---------- BACU004740/1-721 LNLDFNRNIE DLPPTVQEKL FDEVLDRDVQ K--------- ---------- ENSTTRP00000011999/1-708 VTFTLPADIE DLPPTVQEKL FDEVLDRDVQ KELEEESPII NWSLELATRL ENSP00000352676/1-708 VTFTLPADIE DLPPTVQEKL FDEVLDRDVQ KELEEESPII NWSLELATRL ENSBTAP00000004401/1-708 VTFTLPADIE DLPPTVQEKL FDEVLDRDVQ KELEEESPII NWSLELATRL 501 550 bmy_07239T0/1-499 ---------- --GDCLLDSV LQATWGIYDK DSVLRKALHD SLHDCSHWFY BACU004740/1-721 ---------- --GDCLLDSV LQATWGIYDK DSVLRKALHD SLHDCSHWFY ENSTTRP00000011999/1-708 DSRLYALWNR TAGDCLLDSV LQATWGIYDK DSVLRKALHD SLHDCSHWFY ENSP00000352676/1-708 DSRLYALWNR TAGDCLLDSV LQATWGIYDK DSVLRKALHD SLHDCSHWFY ENSBTAP00000004401/1-708 DSRLYALWNR TAGDCLLDSV LQATWGIYDK DSVLRKALHD SLHDCSHWFY 551 600 bmy_07239T0/1-499 TRWKDWESWY SQSFGLHFSL REEQWQEDWA FILSLASQPG ASLEQTHIFV BACU004740/1-721 TRWKDWESWY SQSFGLHFSL REEQWQEDWA FILSLASQPG ASLEQTHIFV ENSTTRP00000011999/1-708 TRWKDWESWY SQSFGLHFSL REEQWQEDWA FILSLASQPG ASLEQTHIFV ENSP00000352676/1-708 TRWKDWESWY SQSFGLHFSL REEQWQEDWA FILSLASQPG ASLEQTHIFV ENSBTAP00000004401/1-708 TRWKDWESWY SQSFGLHFSL REEQWQEDWA FILSLASQPG ASLEQTHIFV 601 650 bmy_07239T0/1-499 LAHILRRPII VYGVKYYKSF RGETLGYTRF QGVYLPLLWE QSFCWKSPIA BACU004740/1-721 LAHILRRPII VYGVKYYKSF RGETLGYTRF QGVYLPLLWE QSFCWKSPIA ENSTTRP00000011999/1-708 LAHILRRPII VYGVKYYKSF RGETLGYTRF QGVYLPLLWE QSFCWKSPIA ENSP00000352676/1-708 LAHILRRPII VYGVKYYKSF RGETLGYTRF QGVYLPLLWE QSFCWKSPIA ENSBTAP00000004401/1-708 LAHILRRPII VYGVKYYKSF RGETLGYTRF QGVYLPLLWE QSFCWKSPIA 651 700 bmy_07239T0/1-499 LGYTRGHFSA LVAMENDGYG NRGAGANLNT DDDVTITFLP LVDSERKLLH BACU004740/1-721 LGYTRGHFSA LVAMENDGYG NRGAGANLNT DDDVTITFLP LVDSERKLLH ENSTTRP00000011999/1-708 LGYTRGHFSA LVAMENDGYG NRGAGANLNT DDDVTITFLP LVDSERKLLH ENSP00000352676/1-708 LGYTRGHFSA LVAMENDGYG NRGAGANLNT DDDVTITFLP LVDSERKLLH ENSBTAP00000004401/1-708 LGYTRGHFSA LVAMENDGYG NRGAGANLNT DDDVTITFLP LVDSERKLLH 701 750 bmy_07239T0/1-499 VHFLSAQELG NEEQQEKLLR EWLECCVTEG GVLVAMQKSS RRRNHPLVTQ BACU004740/1-721 VHFLSAQELG NEEQQEKLLR EWLECCVTEG GVLVAMQKSS RRRNHPLVTQ ENSTTRP00000011999/1-708 VHFLSAQELG NEEQQEKLLR EWLDCCVTEG GVLVAMQKSS RRRNHPLVTQ ENSP00000352676/1-708 VHFLSAQELG NEEQQEKLLR EWLDCCVTEG GVLVAMQKSS RRRNHPLVTQ ENSBTAP00000004401/1-708 VHFLSAQELG NEEQQEKLLR EWLDCCVTEG GVLVAMQKSS RRRNHPLVTQ 751 800 bmy_07239T0/1-499 MVEKWLDRYR QIRPCTSLSD GEEDEDDEDE BACU004740/1-721 MVEKWLDRYR QIRPCTSLSD GEEDEDDEDE ENSTTRP00000011999/1-708 MVEKWLDRYR QIRPCSSLSD GEEDEDDEDE ENSP00000352676/1-708 MVEKWLDRYR QIRPCTSLSD GEEDEDDEDE ENSBTAP00000004401/1-708 MVEKWLDRYR QIRPCTSLSD GEEDEDDEDE