KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:23:57 2014 Check: 00 .. Name: ENSBTAP00000004413/1-332 Len: 332 Check: 2742 Weight: 1.00 Name: ENSP00000238721/1-332 Len: 332 Check: 2877 Weight: 1.00 Name: ENSTTRP00000012743/1-269 Len: 332 Check: 8464 Weight: 1.00 Name: bmy_05486T0/1-205 Len: 332 Check: 5217 Weight: 1.00 Name: BACU010229/1-332 Len: 332 Check: 2731 Weight: 1.00 // 1 50 ENSBTAP00000004413/1-332 MIAVHFDKPG GPENLYLKEV AKPSPGEGEV LLKVAASALN RADLLQRQGQ ENSP00000238721/1-332 MLAVHFDKPG GPENLYVKEV AKPSPGEGEV LLKVAASALN RADLMQRQGQ ENSTTRP00000012743/1-269 LLAVHFDKPG GPENLYLKEV AKPSPGEGEV LLKVAASALN RADLLQXXXX bmy_05486T0/1-205 ---------- ---------- ---------- ---------- ---------- BACU010229/1-332 MLAVHFDKPG GPENLYLKEV AKPSPGEGEV LLKVAASALN RADLLQRQGQ 51 100 ENSBTAP00000004413/1-332 YAPPPGASNI LGLEASGHVA ELGAGCQGPW RVGDPAMVLL SGGGQAQYVT ENSP00000238721/1-332 YDPPPGASNI LGLEASGHVA ELGPGCQGHW KIGDTAMALL PGGGQAQYVT ENSTTRP00000012743/1-269 XXPPPGASNI WGLEAPGHVA EQGPGCQGH- KIGDPAIVLL PSGG--QYVT bmy_05486T0/1-205 ---------- ---------- ---------- ---------- ---------M BACU010229/1-332 YAPPPGASNI LGLEASGHVA EQGPGCQGHW KIGDPAMVLL PSGGQAQYVT 101 150 ENSBTAP00000004413/1-332 VPAELLMPIP AGLTMCQAAA IPEAWLTAFQ LLHLVGNVQA GDSVLIHAGA ENSP00000238721/1-332 VPEGLLMPIP EGLTLTQAAA IPEAWLTAFQ LLHLVGNVQA GDYVLIHAGL ENSTTRP00000012743/1-269 VPEGLLMPIP AGLTMHQAAA IPEAWLTASQ LLHLLGNVQA GDSVLIHAGA bmy_05486T0/1-205 VP-------- ---------- ---------- VLSVAGNVQA GDSVLIHAGA BACU010229/1-332 VPEGLLMPIP EGLTMPQAAA IPEAWLTAFQ LLHLLGNVQA GDSVLIHAGA 151 200 ENSBTAP00000004413/1-332 SGVGTAAIQL ARMAGATPLV TAGSQEKLQI AEKLGAAAGF NYKEEDFSEA ENSP00000238721/1-332 SGVGTAAIQL TRMAGAIPLV TAGSQKKLQM AEKLGAAAGF NYKKEDFSEA ENSTTRP00000012743/1-269 SGVGTAAIQL TQMAGAVPLV TAGSQHRLQM AETLGAAAGF NYKEEDFSEA bmy_05486T0/1-205 SGVGTAAIQL TRMAGAIPLV TAGSQHKLQM AEKLGAAAGF NYKEEDFSEA BACU010229/1-332 SGVGTAAIQL TRMAGAIPLV TAGSQHKLQM AEKLGAAAGF NYKEEDFSEA 201 250 ENSBTAP00000004413/1-332 TLKLTKGAGV NLILDCIGGS YWEKNVNCLA LDGHWVLYGL LGGAVISGPL ENSP00000238721/1-332 TLKFTKGAGV NLILDCIGGS YWEKNVNCLA LDGRWVLYGL MGGGDINGPL ENSTTRP00000012743/1-269 TLKFSKGAGV NLILDCIGGS YWEKNVNCLA LDGRWVLYGL TGGADISGPL bmy_05486T0/1-205 TLKFSKGAGV NLILDCIGGS YWEKNVNCLA LDGRWVLYGL MGGADISGPL BACU010229/1-332 TLKFSKGAGV NLILDCIGGS YWEKNVNCLA LDGRWVLYGL MGGADISGPL 251 300 ENSBTAP00000004413/1-332 FSKLLFKRGS LITSLLRPRD KKYKQMLVKA FTEQILPHFS TEGPQRLLPV ENSP00000238721/1-332 FSKLLFKRGS LITSLLRSRD NKYKQMLVNA FTEQILPHFS TEGPQRLLPV ENSTTRP00000012743/1-269 VSKILFKGGS LITSLLRSRD KK-------- ---------- ---------- bmy_05486T0/1-205 FSKLLFKRGS LITSLLRSRD KKYKQMLVKA FTEQILPHFS TGNPQRLLPV BACU010229/1-332 FSKLLFKRGS LITSLLRSRD KKYKQMLVKA FTEQILPHFS TGNPQRLLPV 301 350 ENSBTAP00000004413/1-332 LDRVYPVAEI QEAHEYMETN KNVGKIVLEL PQ ENSP00000238721/1-332 LDRIYPVTEI QEAHKYMEAN KNIGKIVLEL PQ ENSTTRP00000012743/1-269 ---------- ---------- ---------- -- bmy_05486T0/1-205 LDRVYPITEI QEAHAYMETN KNVGKIVLEL PH BACU010229/1-332 LDRVYPITEI QEAHAYMETN KNVGKIVLEL PH