KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:24:02 2014 Check: 00 .. Name: ENSP00000340594/1-1194 Len: 1474 Check: 2269 Weight: 1.00 Name: ENSBTAP00000004474/1-1187 Len: 1474 Check: 9381 Weight: 1.00 Name: ENSTTRP00000001246/1-1103 Len: 1474 Check: 8419 Weight: 1.00 Name: bmy_16264T0/1-1457 Len: 1474 Check: 4630 Weight: 1.00 Name: BACU004609/1-1119 Len: 1474 Check: 7386 Weight: 1.00 // 1 50 ENSP00000340594/1-1194 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000004474/1-1187 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000001246/1-1103 ---------- ---------- ---------- ---------- ---------- bmy_16264T0/1-1457 MRSAAPPPSP TRPVAELCQE CEEPARASVG HGEPPPPPPP PPPRARLSPE BACU004609/1-1119 ---------- ---------- ---------- ---------- ---------- 51 100 ENSP00000340594/1-1194 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000004474/1-1187 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000001246/1-1103 ---------- ---------- ---------- ---------- ---------- bmy_16264T0/1-1457 RGSELSPHQG RAWLLRRRGM TDPLRRTLSR LRGRRGPRAA GGPGRRAAAA BACU004609/1-1119 ---------- ---------- ---------- ---------- ---------- 101 150 ENSP00000340594/1-1194 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000004474/1-1187 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000001246/1-1103 ---------- ---------- ---------- ---------- ---------- bmy_16264T0/1-1457 ATVAASSAAE GDAGGAPGGP LRERASGARP SLERPPPSPQ AWGPEARVPG BACU004609/1-1119 ---------- ---------- ---------- ---------- ---------- 151 200 ENSP00000340594/1-1194 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000004474/1-1187 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000001246/1-1103 ---------- ---------- ---------- ---------- ---------- bmy_16264T0/1-1457 GRPERSGALG PRPRVGKEAA PPGRGLTRAS LYAPPGSEGS GEDEEDDADY BACU004609/1-1119 ---------- ---------- ---------- ---------- ---------- 201 250 ENSP00000340594/1-1194 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000004474/1-1187 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000001246/1-1103 ---------- ---------- ---------- ---------- ---------- bmy_16264T0/1-1457 YENLPGGSQP APEPEGAEAE RWPPPPPAAG SSPGAEGGRL ETGRLQTQLR BACU004609/1-1119 ---------- ---------- ---------- ---------- ---------- 251 300 ENSP00000340594/1-1194 ---------M HDLPPDSGAR RGGRGLADHS FPAGARAPGQ PPSRGAA--- ENSBTAP00000004474/1-1187 ---------M HDLPPDSGAR RGDRGWADRG CPAGARAPGQ PPSPCGAADR ENSTTRP00000001246/1-1103 ---------- ---------- ---------- ---------- ---------- bmy_16264T0/1-1457 EAYYLLIQAM HDLPPDSGRR QGDRGRADRG CPAGARAPGQ PPSPCGA--- BACU004609/1-1119 ---------- ---------- ---------- ---------- ---------- 301 350 ENSP00000340594/1-1194 --YRRACPRD GERGGGGRPR QQVSPPRSPQ REPRGGQLRT PRMRPSCSRS ENSBTAP00000004474/1-1187 RAYRRACPRV WERGGGGRPW QQVSPPRSPP GESGGGRPRT PRMRLSCSRS ENSTTRP00000001246/1-1103 ---------- ---------- ---------- ---------- --MRLPCSRS bmy_16264T0/1-1457 -AARRACPRD CERGGGGRPW QQVSPPRSPP KESGGGRPRT PRMLLSCSRS BACU004609/1-1119 ---------- ---------- ---------- ---------- --MLLSCSRS 351 400 ENSP00000340594/1-1194 LESLRVGAKP PPFQRWPSDS WIRCGAHRDW DEPPPRGGRM DGWSGDRARA ENSBTAP00000004474/1-1187 LDSLQVGAKT PPFQRWPSDS WIWCGTRREP DEPPPRGGGM HGWSGGSARA ENSTTRP00000001246/1-1103 LDSLRVGAKP PPLQRWRSDS WIRCGARGEP DEPPPRGGGM DGWSGGSSRA bmy_16264T0/1-1457 LDSLRVGAKP PPLQRWRSDS WIRCGARGEP EEPPPRGGGM DGWSGGSSRA BACU004609/1-1119 LDSLRVGAKP PPLQRWRSDS WIRCGARGEP DEPPPRGGGM DGWSGGSSRA 401 450 ENSP00000340594/1-1194 AAPTGLQPPG CKDHGCSSGS PFRDPAGSSV IRSGKGDRQE GPSFLRPPAV ENSBTAP00000004474/1-1187 AAPSGPRLPR SEDPGRSTGS ---------- --RGKGDGQE GLPFLRPPAV ENSTTRP00000001246/1-1103 AAPSGLRPPS SEDPRRSSGS ---------- --RSKEDGQE GLPFLKPPAV bmy_16264T0/1-1457 AAPSGLRTRS SEDPRRSSGS ---------- --RGKEDGQE GLPFLKPPAV BACU004609/1-1119 AAPSGLRTRS SEDPRRSSGS ---------- --RGKEDGQE GLPFLKPPAV 451 500 ENSP00000340594/1-1194 TVKKLQKWMY KGRLLSLGMK GRARGTAPKV TGTQAASPNV GALKVRENRV ENSBTAP00000004474/1-1187 TVKKLQKWMY KGRLLSLGMK GRARRTPPDG TGAQATASNL GSLKMRESQI ENSTTRP00000001246/1-1103 TVKKLQKWMY KGRLLSLGMK GRARRTPPEV TRAQATSPNL GALKMRESQV bmy_16264T0/1-1457 TVKKLQKWMY KGRLLSLGMK GRARRTPPEV TRAQATSPNL GALKMRESQV BACU004609/1-1119 TVKKLQKWMY KGRLLSLGMK GRARRTPPEV TRAQATSPNL GAMKMRENQV 501 550 ENSP00000340594/1-1194 LSVPPDQRIT LT-------- --------DL FENAYGSSMK GRELEELKDN ENSBTAP00000004474/1-1187 LSVPPDQRIT LT-------- --------DL FENVCESSMK RNELKDLKDN ENSTTRP00000001246/1-1103 VSVPPDQRIT LT-------- --------DL FENVYESSMK RRELEDLKDN bmy_16264T0/1-1457 VSVPPDQRIT LTALNSSVRN SAIVAPEANL FENVYESSMK RRELEDLNDN BACU004609/1-1119 VSVPPDQRIT LTALNSSVRN SAIVAPEANL FENVYESSMK RRELEDLKDN 551 600 ENSP00000340594/1-1194 IEFRGHKPLN SITVSKKRNW LYQSTLRPLN LEEENKKCQD RSHLSISPVS ENSBTAP00000004474/1-1187 IGFRGHKPLN SITVSKKRNW LYQSTLRSFN LEEENKKCQD ISHLSVSPIS ENSTTRP00000001246/1-1103 IGFRGHKPLN SITVSKKRNW LYQSTLRSFN LEDENKKCQD ISHLSISPVS bmy_16264T0/1-1457 IGFRGHKPLN SITVSKKRNW LYQSTLRSFN LEEENKKCQD ISHLSISPVS BACU004609/1-1119 IGFRGHKPLN SITVSKKRNW LYQSTLRSFN LEEENKKCQD ISHLSISPVS 601 650 ENSP00000340594/1-1194 LPKHQLSQSF LKSSKEYCTY VVCNATNSSL SKNCALDFNE ENDADDEGEI ENSBTAP00000004474/1-1187 LPKQQLSQPF LKSSEEYCTY MVCNATNSSL SRNCSLDFNE ENDADDEGEI ENSTTRP00000001246/1-1103 LPKLQLSRPF LKSSEEYCTY MVCTATNSSL SRDCSLDFNE ENDADDEGEI bmy_16264T0/1-1457 LPKLQLSRPF LKSSEEYCTY MVCNATNSSL SRNCSLDFNE ENDADDEGEI BACU004609/1-1119 LPKLQLSRPF LKSSEEYCTY MVCNATNSSL SRNCSLDFNE ENDADDEGEI 651 700 ENSP00000340594/1-1194 WYNPIPEDDD LGISSALSFG EADSAVLKLP AVNLSMLSGS DLMKAERHTE ENSBTAP00000004474/1-1187 WYNPIPEDDD FGISNALSFG ETDSAVLKFP DVSLRVLSGS NLMKAEQYTE ENSTTRP00000001246/1-1103 WYNPIPEDDD FGISNALSFG EADSAVLKFP DVGLRVLSGS DLMKEEQHTE bmy_16264T0/1-1457 WYNPIPEDDD FGISNALSFG EADSAVLKFP DVGLRVLSGS DLTKGEQHTE BACU004609/1-1119 WYNPIPEDDD FGISNALSFG EADSAVLKFP DVGLRVLSGS DLMKGEQHTE 701 750 ENSP00000340594/1-1194 DSLCSSEHAG DIQTTRSNGM NPIHPAHSTE FVQQYKQKLG HKTQEGIMVE ENSBTAP00000004474/1-1187 DSFCSSEHTG DVQTTQSHEI NPVDSICPTE FVQRYKQSHR HKMQERIIIE ENSTTRP00000001246/1-1103 DLLCSSEHTG DVQTTQSNEI NPIDSIYSTE FVEQYKQRHG HKTQEGIIVE bmy_16264T0/1-1457 DLLCSSEHTG DVQTTQSNEI NPIDSTYSTE FVQQYKQRHG HKTQEGIIVE BACU004609/1-1119 DLLCSSEHTG DVQTTQSNEI NPMDSTYSTE FVQQYKQKHG HKTQEGIIVE 751 800 ENSP00000340594/1-1194 DSPMLKSPFA GSGILAATNS TELGIMEPSS PNPSPVKKGS SINWSLPDKI ENSBTAP00000004474/1-1187 DSPMLKSPFS GPGSVAATNK TDLGVMEPSS PSPSPVKKGS SMNWSFPDKI ENSTTRP00000001246/1-1103 ESPTLKSPFA GPGIVAATNK PDLGVAGPSS PSPSPVKKGS SIHWSFPDKI bmy_16264T0/1-1457 ESPMLRSPFA GPGIVAATNK PDLGVTEPSS TSPSPVKKGS SIHWSFPDKI BACU004609/1-1119 ESPMLRSPFA GPGIVAATNK PDLGVTEPSS TSPSPVKKGS SIHWSFPDKI 801 850 ENSP00000340594/1-1194 KSPRTVRKLS MKMKKLPEFS RKLSVKGTLN YINSPDNTPS LSKYNCREVH ENSBTAP00000004474/1-1187 KSPRTVRKLS MKMKKLPELS RKLSVKGTLN YVNSPDNTPS LSKCNCQEIH ENSTTRP00000001246/1-1103 KSPRTVRKLS MRMKRLPEFS RKLSVKGNLN YGNSPDNTPS LSKCNWQEIH bmy_16264T0/1-1457 KSPRTVRKLS MKMKRLPEFS RKLSVKGTLN YGNSPDNTPS LSKCNCQEIH BACU004609/1-1119 KSPRTVRKLS MKMKRLPEFS RKLSVKGSLN YGNSPDNTPS LSKCNCQEIH 851 900 ENSP00000340594/1-1194 HTDILPSGNT TTAAKRNVIS RYHLDTSVSS QQSYQKKNSM SSKYSCKGGY ENSBTAP00000004474/1-1187 HAVILPSGNT TTAAKRNVIS RYHLDTSVSS QPTYQKKTSV SSKYSCKGGY ENSTTRP00000001246/1-1103 NAVILPSGNT TTAAKRNVIS RYHLDTSVSS QHSYQKKTSV SSKYSCKSGY bmy_16264T0/1-1457 HAVILPSGNT TTAAKRNVIS RYHLDTSVSS QHSYQKKTSV SSKYSCKSGY BACU004609/1-1119 HAVILPSGNT TTAAKRNVIS RYHLDTSVSS QHSYQKKTSV SSKYSCKSGY 901 950 ENSP00000340594/1-1194 LSDGDSPELT TKASKHGSEN KFGKGKEIIS NSCSKNEIDI DAFRHYSFSD ENSBTAP00000004474/1-1187 LSDGDSPELI AKSSKYGFEN KFAKGKDIIP NSSSKNEIDI DAFRHYSFSD ENSTTRP00000001246/1-1103 LSDGDSPELI AKSSKHGCEN KFAKGKEIIP NSCSKNEIDI DAFRHYSFSD bmy_16264T0/1-1457 LSDGDSPELI AKSSKHGCEN KFAKGKEIIP NSCSKNEIDI DAFRHYSFSD BACU004609/1-1119 LSDGDSPELI AKSSKHGCEN KFAKGKEIIP NSCSKNEIDI DAFRHYSFSD 951 1000 ENSP00000340594/1-1194 QPKCSQYISG LMSVHFYGAE DLKPPRIDSK DVFCAIQVDS VNKARTALLT ENSBTAP00000004474/1-1187 QPKCSQYISG LMSVHFYGAE DLKPPRIDSK DVFCAIQVDS VNKARTALLT ENSTTRP00000001246/1-1103 QPKCSQYISG LMSVHFYGAE DLKPPRIDSK DVFCAIQVDS VNKARTALLT bmy_16264T0/1-1457 QPKCSQYISG LMSVHFYGAE DLKPPRIDSK DVFCAIQVDS VNKARTALLT BACU004609/1-1119 QPKCSQYISG LMSVHFYGAE DLKPPRIDSK DVFCAIQVDS VNKARTALLT 1001 1050 ENSP00000340594/1-1194 CRTTFLDMDH TFNIEIENAQ HLKLVVFSWE PTPRKNRVCC HGTVVLPTLF ENSBTAP00000004474/1-1187 CRTTFLDMDH TFNIEIENAQ HLKLVVFSWE PTPRKNRVCC HGTVVLPTLF ENSTTRP00000001246/1-1103 CRTTFLDMDH TFNIEIENAQ HLKLVVFSWE PTPRKNRVCC HGTVVLPTLF bmy_16264T0/1-1457 CRTTFLDMDH TFNIEIENAQ HLKLVVFSWE PTPRKNRVCC HGTVVLPTLF BACU004609/1-1119 CRTTFLDMDH TFNIEIENAQ HLKLVVFSWE PTPRKNRVCC HGTVVLPTLF 1051 1100 ENSP00000340594/1-1194 RVTKTHQLAV KLEPRGLIYV KVTLMEQWEN SLHGLDINQE PIIFGVDIQK ENSBTAP00000004474/1-1187 RVTKTHQLAV KLEPRGLIYV KVTLLEQWEN SLHGLDINRE PVVFGVDIRR ENSTTRP00000001246/1-1103 RVTKTHQLAV KLEPRGLIYV KVTLLEQWEN SLHGLDINRE PVIFGVDIRK bmy_16264T0/1-1457 RVTKTHQLAV KLEPRGLIYV KVTLLEQWEN SLHGLDINRE PVIFGVDIRE BACU004609/1-1119 RVTKTHQLAV KLEPRGLIYV KVTLLEQWEN SLHGLDINRE PVIFGVDIRE 1101 1150 ENSP00000340594/1-1194 VVEKENIGLM VPLLIQKCIM EIEKRGCQVV GLYRLCGSAA VKKELREAFE ENSBTAP00000004474/1-1187 VVEKENIGLM VPLLIQKCIM EIEKRGCQVV GLYRLCGSAA VKKELREAFE ENSTTRP00000001246/1-1103 VVEKENIGLM VPLLIQKCIM EIEKRGCQVV GLYRLCGSAA VKKELREAFE bmy_16264T0/1-1457 VVEKENIGLM VPLLIQKCIM EIEKRGCQVV GLYRLCGSAA VKKELREAFE BACU004609/1-1119 VVEKENIGLM VPLLIQKCIM EIEKRGCQVV GLYRLCGSAA VKKELREAFE 1151 1200 ENSP00000340594/1-1194 RDSKAVGLCE NQYPDINVIT GVLKDYLREL PSPLITKQLY EAVLDAMAKS ENSBTAP00000004474/1-1187 RDSKAVGLCE SQYPDINVIT GVLKDYLREL PSPLITKQLY EAVLDAMAKN ENSTTRP00000001246/1-1103 RDSKAVGLCE SQYPDINVIT GVLKDYLREL PSPLITKQLY ETVLDAMAKH bmy_16264T0/1-1457 KDSKAVGLCE SQYPDINVIT GVLKDYLREL PSPLITKQLY EAVLDAMAKN BACU004609/1-1119 KDSKAVGLCE SQYPDINVIT GVLKDYLREL PSPLITKQLY EAVLDAMAKN 1201 1250 ENSP00000340594/1-1194 PLKMSSNGCE NDPGDSKYTV DLLDCLPEIE KATLKMLLDH LKLVASYHEV ENSBTAP00000004474/1-1187 PLKMSSNGCE NDPGDSQYTF GLLDCLPDVE KATLMMLLDH LKLVASYHDV ENSTTRP00000001246/1-1103 PLKMSSNGCE NDPSDSKYTV DLLDCLPDVE KATLMMLLDH LKLVASYRDV bmy_16264T0/1-1457 PLKMSSNGCE NDPSDSKYTV DLLDCLPDVE KATLMMLLDH LKLVASYRDV BACU004609/1-1119 PLKMSSNGCE NDPSDSKYTV DLLDCLPDVE KATLMMLLDH LKLVASYRDV 1251 1300 ENSP00000340594/1-1194 NKMTCQNLAV CFGPVLLSQR QEPSTHNNRV FTDSEELASA LDFKKHIEVL ENSBTAP00000004474/1-1187 NKMTCQNLAV CFGPVLLSQR QETSTHNNRV FTDSKELATA LDFKKHIEVL ENSTTRP00000001246/1-1103 NKMTCQNLAV CFGPVLLSQR QETSSHNNRV FTDSEELASA LDFKKHIEVL bmy_16264T0/1-1457 NKMTCQNLAV CFGPVLLSQR QETSTHNNRV FTDSEELASA LDFKKHIEVL BACU004609/1-1119 NKMTCQNLAV CFGPVLLSQR QETSTHNNRV FTDSEELASA LDFKKHIEVL 1301 1350 ENSP00000340594/1-1194 HYLLQLWPVQ RLTVKKSTDN LFPEQKSSLN YLRQKKERPH MLNLSGTDSS ENSBTAP00000004474/1-1187 HYLLQLWPVQ RLTIKESADN LFPEQKSSLN YLRRKKERPY LLNLSGTESS ENSTTRP00000001246/1-1103 HYLLQLWPVQ RLTIKESANN LFPEQKSSLN YLRRKKERPY LLNLSGTDSS bmy_16264T0/1-1457 HYLLQLWPVQ RLTIKESANN LFPEHKSSLN YLRRKKERPY LLNLSGTDSS BACU004609/1-1119 HYLLQLWPVQ RLTIKESANN LFPEHKSSLN YLRRKKERPY LLNLSGTDSS 1351 1400 ENSP00000340594/1-1194 GVLRPRQNRL DSPLSNRYAG DWSSCGENYF LNTKENLNDV DYDDVPSEDR ENSBTAP00000004474/1-1187 GVLRPRQTRL ESPLSNRYAG DWSSCGENYF LNTKENLNTV DYDDVPSEDR ENSTTRP00000001246/1-1103 RVLRPRQTRL DSPLSNRYAG DWSSCGDNYF LNMKENLNDV DYDDVPSEDR bmy_16264T0/1-1457 RVLRPRQTRL DSPLSNRYAG DWSSCGENYF LNMKENLNDV DYDDVPSEDR BACU004609/1-1119 RVLRPRQTRL DSPLSNRYAG DWSSCGENYF LNMKENLNDV DYDDVPSEDR 1401 1450 ENSP00000340594/1-1194 KIGENYSKMD GPEVMIEQPI PMSKECTFQT YLTMQTVEST VDRKNNLKDL ENSBTAP00000004474/1-1187 ENGENCSKIY EPDITIEQPT PLSQECTFQT YLTVQTMESR VDRKVNLKDL ENSTTRP00000001246/1-1103 ENGENCSKMY EPDIMIEQPT PTSKECTFQT YLTMQAIESR -DRKVNLKDL bmy_16264T0/1-1457 ENGENCSKMY EPDIMIEQPT PTSKECTFQT YLTMQAIESR -DXKVNLKDL BACU004609/1-1119 ENGENCSKMY EPDIMIEQPT PTSKECAFQT YLTMQAIESR -DRKVNLKDL 1451 1500 ENSP00000340594/1-1194 QESIDTLIGN LERELNKNKL NMSF ENSBTAP00000004474/1-1187 QESIDTLIGN LESELNKNKL NMSV ENSTTRP00000001246/1-1103 QESIDTLIGN LERELKKNKL NMSV bmy_16264T0/1-1457 QESIDTLIGN LERELNKNKL NMSV BACU004609/1-1119 QESIDTLIGN LERELNKNKL NMSV