KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:24:03 2014 Check: 00 .. Name: ENSP00000396954/1-282 Len: 288 Check: 8069 Weight: 1.00 Name: ENSTTRP00000001056/1-278 Len: 288 Check: 9894 Weight: 1.00 Name: bmy_06356T0/1-280 Len: 288 Check: 9067 Weight: 1.00 Name: ENSBTAP00000004485/1-283 Len: 288 Check: 1859 Weight: 1.00 Name: BACU011061/1-160 Len: 288 Check: 3226 Weight: 1.00 // 1 50 ENSP00000396954/1-282 MSLLATLGLE LDRALLPASG LGWLVDYGKL PPAPAPLAPY EVLGGALEGG ENSTTRP00000001056/1-278 MSLLATLGLE LDRTLLPASG LGWLVDYGKL PLAPAPLGPY EVLGGALEGG bmy_06356T0/1-280 MSLLATLGLE LDRTLLPASG LGWLVDYGKL PLAPAPLGPY EVLGGALEGG ENSBTAP00000004485/1-283 MSLLATLGLE LDRTLLPASG LGWLVDYGKL PLAPAPLGPY EVLGGALEGG BACU011061/1-160 MSLLATLGLE LDRTLLPASG LGWLVDYGKL PLAPAPLGPY EVLGGALEGG 51 100 ENSP00000396954/1-282 LPVGGEPLAG DGFSDWMTER VDFTALLPLE PPLPPGTLPQ PSPTPPDLEA ENSTTRP00000001056/1-278 LPAGGEPLAG DGFSDWMTER VDFTALLPLE PPLPSGALPP PSPPPPDLEA bmy_06356T0/1-280 LPGGGEPLAG DGFSDWMTER LDFTALLPLE PPLPSGALPP PSPPPPDLEA ENSBTAP00000004485/1-283 LPGGGEPLAG DGFSDWMTER VDFTALLPLE PPLPSGALPP PSPPPPDLEA BACU011061/1-160 LPGGGEPLAG DGFSDWMTER VDFTALLPLE PPLPS----- ---------- 101 150 ENSP00000396954/1-282 MASLLKKELE QMEDFFLDAP PLPPPSPPPL PPPPLPP--- ---APSLPLS ENSTTRP00000001056/1-278 MASLLKKELE QMED-FLDAP LLPPSSPPPT QPAPAP---- ---ALSLPLP bmy_06356T0/1-280 MASLLKKELE QMEDFFLDAP LLPPSSPPPT QPAPAP---- ---SLSLPLP ENSBTAP00000004485/1-283 MASLLKKELE QMEDYFLDAP LLPPSSPPPP PPQPPAPAPS LPLPLPLPLP BACU011061/1-160 ---------- ---------- ---------- ---------- ---------- 151 200 ENSP00000396954/1-282 LPSFDLPQPP VLDTLDLLAI YCRNEAGQEE VGMPPLPPPQ QPPPPSPPQP ENSTTRP00000001056/1-278 LPTFDLPPTP APDTLDLLAI YCRSEAEQGD SGLAPLCPPQ QPPSP-PPQP bmy_06356T0/1-280 LPTFDLPPPP APDTLDLLAI YCRSEAAQGE SGLAPLSPPP QPPPP-PPQP ENSBTAP00000004485/1-283 LPTFDLPQPP SLDTLDLLAI YCRGEAGQGD SGLAPLPPPP QAPPP-P--- BACU011061/1-160 ---------- ---------- ---------- ---------- ---------- 201 250 ENSP00000396954/1-282 SRLAPYPHPA TTRGDRKQKK RDQNKSAALR YRQRKRAEGE ALEGECQGLE ENSTTRP00000001056/1-278 SRPTPYPNPA ATRGDRKQKK RDQN-SAALR YRQRKRAEGE ALEGECQGLE bmy_06356T0/1-280 SRPTPYPNPA ATRGDRKQKK RDQNKSAALR YRQRKRAEGE ALEGECQGLE ENSBTAP00000004485/1-283 -RPAPYPSPA ASRGDRKQKK RDQNKSAALR YRQRKRAEGE ALEGECQGLE BACU011061/1-160 ---------- ---GDRKQKK RDQNKSAALR YRQRKRAEGE ALEGECQGLE 251 300 ENSP00000396954/1-282 ARNRELKERA ESVEREIQYV KDLLIEVYKA RSQRTRSC ENSTTRP00000001056/1-278 ARNRELRERV ESVEREIQYV KDLLIEVYKA RSQRTRPS bmy_06356T0/1-280 ARNRELRERA ESVEREIQYV KDLLIEVYKA RSQRTRSS ENSBTAP00000004485/1-283 ARNRELRERA ESVEREIQYV KDLLIEVYKA RSQRTRNS BACU011061/1-160 ARNRELRERA ESVEREIQYV KDLLIEVYKA RSQRTRSS