KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:24:04 2014 Check: 00 .. Name: ENSP00000275730/1-914 Len: 1312 Check: 1611 Weight: 1.00 Name: bmy_16125T0/1-1024 Len: 1312 Check: 8696 Weight: 1.00 Name: ENSBTAP00000004493/1-914 Len: 1312 Check: 9031 Weight: 1.00 Name: BACU012067/1-1204 Len: 1312 Check: 541 Weight: 1.00 Name: ENSTTRP00000010525/1-855 Len: 1312 Check: 2624 Weight: 1.00 // 1 50 ENSP00000275730/1-914 MASESSPLLA YRLLGEEGVA LPANGAGGPG GASARKLSTF LGVVVPTVLS bmy_16125T0/1-1024 MASENSPLLA YRLLGEEGVS FPANGAGGPG GASARKLSTF LGVVVPTVLS ENSBTAP00000004493/1-914 MASENSPLLA YRLLGEEGVS FPANGAGGPG GAPARKLSTF LGVVVPTVLS BACU012067/1-1204 MANENSPLLA YRLLGEEGVS FPANGAGGPG GASARKLSTF LGVVVPTVLS ENSTTRP00000010525/1-855 MANENSPLLA YRLLGEEGVS FPASGAGGPG GAPARKLSTF LGVVVPTVLS 51 100 ENSP00000275730/1-914 MFSIVVFLRI GFVVGHAGLL QALAMLLVAY FILALTVLSV CAIATNGAVQ bmy_16125T0/1-1024 MFSIVVFLRI GFVVGHAGLL QALAMLLVAY FILALTVLSV CAIATNGAVR ENSBTAP00000004493/1-914 MFSIVVFLRI GFVVGHAGLL QALAMLLVAY VILALTVLSV CAIATNGAVR BACU012067/1-1204 MFSIVVFLRI GFVVGHAGLL QALAMLLVAY FILALTVLSV CAIATNGAVR ENSTTRP00000010525/1-855 MFSIVVFLRI GFVVGHAGLL QALAMLLVAY LILALTVLSV CAIATNGAVR 101 150 ENSP00000275730/1-914 GGGAYFMISR TLGPEVGGSI GLMFYLANVC GCAVSLLGLV ESVLDVFGAD bmy_16125T0/1-1024 GGGAYFMISR TLGPEVGGSI GLMFYLANVC GCAVSLLGLV ETMLDVFGAD ENSBTAP00000004493/1-914 GGGAYFMISR TLGPEVGGSI GLMFYLANVC GCAVSLLGLV EAILDVFGAD BACU012067/1-1204 GGGAYFMISR TLGPEVGGSI GLMFYLANVC GCAVSLLGLV EAMLDVFGAD ENSTTRP00000010525/1-855 GGGAYFMISR TLGPEVGGSI GLMFYLANVC GCAVSLLGLV EAMLDVFGAD 151 200 ENSP00000275730/1-914 ATGPSGLRVL PQGYGWNLLY GSLLLGLVGG VCTLGAGLYA RASFLT---- bmy_16125T0/1-1024 ATGSSGLRIL PQGYGWNLLY GSLLLGLVGG VCTLGAGLYA RASFLT---- ENSBTAP00000004493/1-914 ASGSSGLRVL PQGYGWSLLY GSLLLGLVGG VCTLGAGLYA RASFLT---- BACU012067/1-1204 ATGSSGLRIL PQGYGWNLLY GSLLLGLVGG VCTLGAGLYA RASFLTFLXX ENSTTRP00000010525/1-855 ATGSSGLRTL PQGYGWNLLY GSLLLGLVGG VCTLGAGLYA RASFLT---- 201 250 ENSP00000275730/1-914 FLLVSGSLAS VLISFVAVGP RDIRLTPRPG PNGSSLPPRF GHFTGFNSST bmy_16125T0/1-1024 FLLVSGSLAS VLVSFVAVRP RDIPLTPRPG PNGSSLPPQV GHFTGFNSST ENSBTAP00000004493/1-914 FLLVSGSLAS VLVSFVAVGP RDIPLAPRPG PNGSSLPPQV GHFTGFNSST BACU012067/1-1204 FLLVSGSLAS VLVSFVAVRP RDIPLTPRPG PNGSSLPPQV GHFTGFNSST ENSTTRP00000010525/1-855 FLLVSGSLAS VLVSFVAVRP RDIPLTPRPG PNGSSLPPQV GHFTGFNSST 251 300 ENSP00000275730/1-914 LKDNLGAGYA EDYTTGAVMN FASVFAVLFN GCTGIMAGAN MSGELKDPSR bmy_16125T0/1-1024 LKANLGAGYA KDYTTGATMT FASVFAVLFN GCTGIMAGAN MSGELKDPSR ENSBTAP00000004493/1-914 LKANLDAGYA KDYTTGAMMT FASVFAVLFN GCTGIMAGAN MSGELKDPSR BACU012067/1-1204 LKANLGAGYA KDYTTGATMT FASVFAVLFN GCTGIMAGAN MSGELKDPSR ENSTTRP00000010525/1-855 LKANLGAGYA KDYTTGATMT FASVFAVLFN GCTGIMAGAN MSGELKDPSR 301 350 ENSP00000275730/1-914 AIPLGTIVAV AYTFFVYVLL FFLSSFTCDR TLLQEDYGFF RAISLWPPLV bmy_16125T0/1-1024 AIPLGTIVAV AYTFFIYILL FFLSSFTCDR ILLQEDYGFF QAISLWSPLV ENSBTAP00000004493/1-914 AIPLGTIVAV AYTFFIYILL FFLSSFTCDR VLLQEDYGFF RAISLWPPLV BACU012067/1-1204 AIPLGTIVAV AYTFFIYILL FFLSSFTCDR ILLQEDYGFF QAISLWSPLV ENSTTRP00000010525/1-855 AIPLGTIVAV AYTFFIYILL FFLSSFTCDR ILLQEDYGFF QAISLWPPLV 351 400 ENSP00000275730/1-914 LIGIYATALS ASMSSLIGAS RILHALARDD LFGVILAPAK VVSRGGNPWA bmy_16125T0/1-1024 LTGIYATSLS ASMSSLIGAS RILHALAQDN LFGVILAPAK VVSQGGNPWG ENSBTAP00000004493/1-914 LVGIYATSLS ASMSSLIGAS RILHALAQDD LFGVILAPAK VVSRGGNPWG BACU012067/1-1204 LTGIYATSLS ASMSSLIGAS RILHALAQDN LFGVILAPAK VVSQGGNPWG ENSTTRP00000010525/1-855 LTGIYATSLS ASMSSLIGAS RILHALAQDN LFGVILAPAK VISQGGNPWG 401 450 ENSP00000275730/1-914 AVLYSWGLVQ LVLLAGKLNT LAAVVTVFYL VAYAAVDL-- -SCLS----L bmy_16125T0/1-1024 AVLYSWGLVQ VSFPLQAALT LTVCPPWLHS RDQEGLDAHW ETCLKRQDVL ENSBTAP00000004493/1-914 AVLYSWGLVQ LVLLAGKLNT LAAVVTVFYL VAYAAVDL-- -SCLS----L BACU012067/1-1204 AVLYSWGLVQ LVLLAGKLNT LAAVVTVFYL VAYAAVDL-- -SCLS----L ENSTTRP00000010525/1-855 AVLYSWGLVQ LVLLAGKLNT LAAVVTVFYL VAYAAVDL-- -SCLS----L 451 500 ENSP00000275730/1-914 EW-------- ---------A SAPNF----- ---------- ---------- bmy_16125T0/1-1024 AWDRERGAWM NAQPLGPCAA GAPGWEGEHA GRCGHCLLLG GLCCRGPVLP ENSBTAP00000004493/1-914 EW-------- ---------A SAPNF----- ---------- ---------- BACU012067/1-1204 EW-------- ---------A SAPNF----- ---------- ---------- ENSTTRP00000010525/1-855 EW-------- ---------A SAPNF----- ---------- ---------- 501 550 ENSP00000275730/1-914 ---------- ---------- ---------- ---------- ---------- bmy_16125T0/1-1024 EPRVGLGPQL PVSEGDACVL REREGGMGRP GTKREEAADG VEWLAVGAAL ENSBTAP00000004493/1-914 ---------- ---------- ---------- ---------- ---------- BACU012067/1-1204 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000010525/1-855 ---------- ---------- ---------- ---------- ---------- 551 600 ENSP00000275730/1-914 ---------R PTFSLFSWHT CLLGVASCLL MMFLISPGAA GGSLLLMGLL bmy_16125T0/1-1024 SVLPSLSAPS PTFSLFSWHT CLLGVASCLL MMFLISPGAA GGSLLLMGLL ENSBTAP00000004493/1-914 ---------R PTFNLFSWHT CLLGVASCLL MMFLISPGAA GGSLLLMGLL BACU012067/1-1204 ---------R PTFSLFSWHT CLLGVASCLL MMFLISPGAA GGSLLLMGLL ENSTTRP00000010525/1-855 ---------- ---------- ---------- ---------- ---------- 601 650 ENSP00000275730/1-914 AALLTARGGP SSWGYVSQAL LFHQVRKYLL RLDVRKDHVK FWRPQLLLLV bmy_16125T0/1-1024 SALLTARGGP SSWGYVSQAL LFHQVRKYLL RLDVRKDHVK FWRPQLLLLV ENSBTAP00000004493/1-914 SALLTARGGP SSWGYVSQAL LFHQVRKYLL RLDVRKDHVK FWRPQLLLLV BACU012067/1-1204 SALLTARGGP SSWGYVSQAL LFHQVRKYLL RLDVRKDHVK FWRPQLLLLV ENSTTRP00000010525/1-855 ---------- ---------- LFPRVRKYLL RLDVRKDHVK FWRPQLLLLV 651 700 ENSP00000275730/1-914 GNPRGALPLL RLANQLKKGG LYVLGHVTLG DLDSLPSDPV QPQYGAWLSL bmy_16125T0/1-1024 GNPRGALPLL RLANQLKKGG LYVLGHVTLG DLDSLPSDPV QPQYGAWLSL ENSBTAP00000004493/1-914 GNPRGALPLL RLANQLKKGG LYVLGHVTLG DLDSLPSDPV QPQYGAWLSL BACU012067/1-1204 GNPRGALPLL RLANQLKKGG LYVLGHVTLG DLDSLPSDPV QPQYGAWLSL ENSTTRP00000010525/1-855 GNPRGALPLL RLANQLKKGG LYVLGHVTLG DLDSLPSDPV QPQYGAWLSL 701 750 ENSP00000275730/1-914 VDRAQVKAFV DLTLSPSVRQ GAQHLLRISG LGGMKPNTLV LGFYDDAPPQ bmy_16125T0/1-1024 VDRAQVKAFV DLTLSPSVRQ GAQHLLRISG LGGMKPNTLV LGFYDDAAPQ ENSBTAP00000004493/1-914 VDRAQVKAFV DLTLSPSVRQ GAQHLLRISG LGGMKPNTLV LGFYDDAAPQ BACU012067/1-1204 VDRAQVKAFV DLTLSPSVRQ GAQHLLRISG LGGMKPNTLV LGFYDDAAPQ ENSTTRP00000010525/1-855 VDRAQVKAFV DLTLSPSVRQ GAQHLLRISG LGGMKPNTLV LGFYDDAAPQ 751 800 ENSP00000275730/1-914 DHFLTDPAFS EPADSTREGS SPALSTLFPP PRAPGSPRAL NPQDYVATVA bmy_16125T0/1-1024 DHFLTDPAFS EPADGTQEGG SPALSTLFPP PRALGSPRAL SPQDYVATVA ENSBTAP00000004493/1-914 DHFLTDPAFS EPADGTQEAG APALSTLFPP PRAPGSPRAL SPQDYVATVA BACU012067/1-1204 DHFLTDPAFS EPADGTQEGG SPALSTLFPP PRAPGSPRAL SPQDYVATVA ENSTTRP00000010525/1-855 DHFLTDPAFS EPADGIQEGG SPALSTLFPP PRAPGSPRAL SPQDYVATVA 801 850 ENSP00000275730/1-914 DALKMNKNVV LARASGALPP ERLSRGSGGT SQLHHVDVWP LNLLRPRGGP bmy_16125T0/1-1024 DALKMNKNVV LARACGALPP ERLSRGSGGT SQLHHVDVWP LNLLRPRGGP ENSBTAP00000004493/1-914 DALKMNKNVV LARACGALPP ERLSRGSGGT SQPHHVDVWP LNLLRPRGGP BACU012067/1-1204 DALKMNKNVV LARACGALPP ERLSRGSGGT SQLHHVDVWP LNLLRPRGGP ENSTTRP00000010525/1-855 DALKMNKNVV LARACGHLPP ERLSRGSGGT SQLHHVDVWP LNLLRPRGGP 851 900 ENSP00000275730/1-914 GYVDVCGLFL LQMATILGMV PAWHSARLRI FLCLGPREAP GAAEGRLRAL bmy_16125T0/1-1024 GYVDVCGLFL LQMATILGMV PAWHSARLRI FLCLGPREAP GAAEGRLRAL ENSBTAP00000004493/1-914 GYVDVCGLFL LQMATILGMV PAWHSARLRI FLCLGPREAP GAAEGRLRAL BACU012067/1-1204 GYVDVCGLFL LQMATILGMV PAWHSARLRI FLCLGPREAP GAAEGRLRAL ENSTTRP00000010525/1-855 GYVDVCGLFL LQMATILGMV PAWHSARLRI FLCLGPREAP GAAEGRLRAL 901 950 ENSP00000275730/1-914 LSQLRIRAEV QEVVWGEGAG -AGEPEAEEE GDFVNSGRGD AEAEALARSA bmy_16125T0/1-1024 LSQLRIRAQV QEVVWGEGAA SSQEPEEEEE GDFVNGRRGD AEAEALACSA ENSBTAP00000004493/1-914 LSQLRIRAEV REVVWGEGAA -SEEPEEEEE GDFVNGRRGD AEAEALACSA BACU012067/1-1204 LSQLRIRAQV QEVVWGEGAA SSQEPEEEEE GDFVNGRRGD AEAEALACSA ENSTTRP00000010525/1-855 LSQLRIRAQV QEVVWGEGSA SSQEPEEEEE GDFVNGRRGD AEAEALACSA 951 1000 ENSP00000275730/1-914 NALVRAQQGR GTGGGPGGPE GGDAE-GPIT ALTFLYLPRP PADPARYPRY bmy_16125T0/1-1024 NALVRAQQGR GGGGGPGGPE GGDGEEGPAT ALTFLYLPRP PADPARYPRY ENSBTAP00000004493/1-914 NALVRAQQGR GR-GGPGGPE EGDGEVGPAT ALTFLYLPRP PADSARYLRY BACU012067/1-1204 NALVRAQQGR GGGGGPGGPE GGDGEEGPAT ALTFLYLPRP PADPARYPRY ENSTTRP00000010525/1-855 NALVRAQQGR GGGGGPGGPE GGDGEEGPAT ALTFLYLPRP PADPARYPRY 1001 1050 ENSP00000275730/1-914 LALLETLTRD LGPTLLVHGV ---------- ---------- ---------- bmy_16125T0/1-1024 LALLEILSRD LGPTLLIHGV ---------- ---------- ---------- ENSBTAP00000004493/1-914 LGLLEILSRD LGPTLLIHGV ---------- ---------- ---------- BACU012067/1-1204 LALLEILSRD LGPTLLIHGA YEPPQPPAYR SGSGSLKPNG GGVPPPPLPA ENSTTRP00000010525/1-855 LALLEVLSRD LGPTLLIHGV ---------- ---------- ---------- 1051 1100 ENSP00000275730/1-914 ---------- ---------- ---------- ---------- ---------- bmy_16125T0/1-1024 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000004493/1-914 ---------- ---------- ---------- ---------- ---------- BACU012067/1-1204 SPYGGPTPAS YATATPPAGP AFPVQVKVAQ PVPLSQPPEE ELERLTKKLV ENSTTRP00000010525/1-855 ---------- ---------- ---------- ---------- ---------- 1101 1150 ENSP00000275730/1-914 ---------- ---------- ---------- ---------- ---------- bmy_16125T0/1-1024 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000004493/1-914 ---------- ---------- ---------- ---------- ---------- BACU012067/1-1204 HDMNHPPSGE YFGRCGGCGE DVVGDGAGVV ALDRVFHVGC FVCSTCRAQL ENSTTRP00000010525/1-855 ---------- ---------- ---------- ---------- ---------- 1151 1200 ENSP00000275730/1-914 ---------- ---------- ---------- ---------- ---------T bmy_16125T0/1-1024 ---------- ---------- ---------- ---------- ---------T ENSBTAP00000004493/1-914 ---------- ---------- ---------- ---------- ---------T BACU012067/1-1204 RGQHFYAVER RAYCESCYVA TLEKCSTCSQ PILDRILRAM GKAYHPGCFT ENSTTRP00000010525/1-855 ---------- ---------- ---------- ---------- ---------T 1201 1250 ENSP00000275730/1-914 PVTC------ ---------- ---------- ---------- ---------- bmy_16125T0/1-1024 PVTC------ ---------- ---------- ---------- ---------- ENSBTAP00000004493/1-914 PVTC------ ---------- ---------- ---------- ---------- BACU012067/1-1204 CVVCHRGLDG IPFTVDATSQ IHCIEDFHRK FAPRCSVCGG AIMPEPGQEE ENSTTRP00000010525/1-855 PVTC------ ---------- ---------- ---------- ---------- 1251 1300 ENSP00000275730/1-914 ---------- ---------- ---------- ---------- ---------- bmy_16125T0/1-1024 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000004493/1-914 ---------- ---------- ---------- ---------- ---------- BACU012067/1-1204 TVRIVALDRS FHIGCYKCEE CGLLLSSEGE CQGCYPLDGH ILCKACSAWR ENSTTRP00000010525/1-855 ---------- ---------- ---------- ---------- ---------- 1301 1350 ENSP00000275730/1-914 ---------T DL bmy_16125T0/1-1024 ---------T DL ENSBTAP00000004493/1-914 ---------T DL BACU012067/1-1204 IQELSATVTT DC ENSTTRP00000010525/1-855 ---------T DL