KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:24:05 2014 Check: 00 .. Name: bmy_04542T0/1-355 Len: 460 Check: 5870 Weight: 1.00 Name: ENSP00000406293/1-348 Len: 460 Check: 5710 Weight: 1.00 Name: ENSBTAP00000004501/1-348 Len: 460 Check: 9592 Weight: 1.00 Name: BACU005768/1-396 Len: 460 Check: 7618 Weight: 1.00 Name: ENSTTRP00000007343/1-349 Len: 460 Check: 471 Weight: 1.00 // 1 50 bmy_04542T0/1-355 PHCREAGGRG GVGGEPRPRR ACVSGASGAR AACAPSAFAP PAPGTRLPPL ENSP00000406293/1-348 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000004501/1-348 ---------- ---------- ---------- ---------- ---------- BACU005768/1-396 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000007343/1-349 ---------- ---------- ---------- ---------- ---------- 51 100 bmy_04542T0/1-355 RPSSRRASRA NMGQEEELLR IAKKLEKMVA RKNTEGALDL LKKLNSWQMS ENSP00000406293/1-348 ---------- -MGQEEELLR IAKKLEKMVA RKNTEGALDL LKKLHSCQMS ENSBTAP00000004501/1-348 ---------- -MGQEEELLR IAKKLEKMVA RKKTEGALDL LKKLGSWQMS BACU005768/1-396 ---------- -MGQEDELLR IAKKPEKMVA RKNTEGALDL LKKLNSWQMS ENSTTRP00000007343/1-349 ---------- -MGQEEELLR IAKKLEKMVA RKNTEGALDL LKKLNSWQMS 101 150 bmy_04542T0/1-355 IQLLQTTRIG VAVNGVRKHC SDKEVVSLAK VLIRNWKQLL ---APPKGEK ENSP00000406293/1-348 IQLLQTTRIG VAVNGVRKHC SDKEVVSLAK VLIKNWKRLL DSPGPPKGEK ENSBTAP00000004501/1-348 IQLLQTTRIG VAVNGVRKHC SNKEVVALAK VLIRNWKQLL DSPATPKGEK BACU005768/1-396 IQLLQTTRIG VAVNGVRKHC SDKEVVSLAK VLIRNWKQLL ---APPKGEK ENSTTRP00000007343/1-349 IQLLQTTRIG VAVNGVRKHC SDKEVVSLAK VLIRNWKQLL DSPAPPKGEK 151 200 bmy_04542T0/1-355 REERVKAKKK EKGLDCSDWK PETSLSPPRK KRVEEPKDRR DSVDSKSSAT ENSP00000406293/1-348 GEEREKAKKK EKGLECSDWK PEAGLSPPRK KR-EDPKTRR DSVDSKSSAS ENSBTAP00000004501/1-348 GEERVKAKKK EKGLDCSDWK PETSLSPPRK KRVEEPKDRR DSVDSKSSAT BACU005768/1-396 REERVKAKKK EKGLDCSDWK PETSLSPPRK KRAEEPKDRR DSVDSKSSAT ENSTTRP00000007343/1-349 GEERVKAKKK EKGLDCSDWK PETSLSPPRK KRVEEPKDRR DSVDSKSSAT 201 250 bmy_04542T0/1-355 SSPKRPSMER SNSGKSKAET PRTPSSPSSP TFAPSVCLLA PCYLTGDSVR ENSP00000406293/1-348 SSPKRPSVER SNSSKSKAES PKTPSSPLTP TFASSMCLLA PCYLTGDSVR ENSBTAP00000004501/1-348 SSPKRPSMER SNSSKSKAET PRTPSSPSSP TFAPSVCLLA PCYLTGDSVR BACU005768/1-396 SSPKRPSMER SNSGKSKAET PRTPSSPSSP TFAPSVCLLA PCYLTGDSVR ENSTTRP00000007343/1-349 SSPKRPSMER SNSGKLKAET PRTPSSPSSP TFAPSVCVLA PCYLTGDSVR 251 300 bmy_04542T0/1-355 DKCVEMLSAA LKADDDYKDY GVNCDKMASE IEDHI----- ---------- ENSP00000406293/1-348 DKCVEMLSAA LKADDDYKDY GVNCDKMASE IEDHI----- ---------- ENSBTAP00000004501/1-348 DKCVEMLSAA LKADDDYKDY GVNCDKMASE IEDHI----- ---------- BACU005768/1-396 DKCVEMLSAA LKADDDYKDY GVNCDKMASE IEDHILELCQ GCGCLNCPAA ENSTTRP00000007343/1-349 DKCVEMLSAA LKADDDYKDY GVNCDKMASE IEDHI----- ---------- 301 350 bmy_04542T0/1-355 ---------- ---------Y QELKSTDMKY RNRVRSRISN LKDPRNPGLR ENSP00000406293/1-348 ---------- ---------Y QELKSTDMKY RNRVRSRISN LKDPRNPGLR ENSBTAP00000004501/1-348 ---------- ---------Y QELKSTDMKY RNRVRSRISN LKDPRNPGLR BACU005768/1-396 GLPSTGDPGH GWPLTVSHIY QELKSTDMKY RNRVRSRISN LKDPRNPGLR ENSTTRP00000007343/1-349 ---------- ---------Y QELKSTDMKY RNRVRSRISN LKDPRNPGLR 351 400 bmy_04542T0/1-355 RNVLSGAISS GLIAKMTAE- ---------- ---------- ---VRVGAGT ENSP00000406293/1-348 RNVLSGAISA GLIAKMTAEE MASDELRELR NAMTQEAIRE HQMAKTGGTT ENSBTAP00000004501/1-348 RNVLSGAISA GLIAKMTAEE MASDELRELR NAMTQEAIRE HQMAKTGGTT BACU005768/1-396 RNVLSGAISS GLIAKMTAEE MASDELRELR NAMTQEAIRE HQMAKTGGTT ENSTTRP00000007343/1-349 RNVLSGAISS GLIAKMTAEE MASDELRELR NAMTQEAIRE HQMAKTGGTT 401 450 bmy_04542T0/1-355 SAWWDKGPGP ---SSLAQV- ---------- ---------- ---------- ENSP00000406293/1-348 TDLFQCSKCK KKNCTYNQVQ TRSADEPMTT FVLCNECGNR WKFC------ ENSBTAP00000004501/1-348 TDLFQCSKCK KKNCTYNQVQ TRT-DEPMTT FVLCNECGNR WKFC------ BACU005768/1-396 TDLFQCSKCK KKNCTYNQVQ TRSADEPMTT FVLCNECGNR WKVCMSVSFF ENSTTRP00000007343/1-349 TDLFQCSKCK KKNCTYNQVQ TRSADEPMTT FVLCNECGNR WKFC------ 451 500 bmy_04542T0/1-355 ---------- ENSP00000406293/1-348 ---------- ENSBTAP00000004501/1-348 ---------- BACU005768/1-396 LPCHPQMLPT ENSTTRP00000007343/1-349 ----------