KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:24:06 2014 Check: 00 .. Name: ENSP00000289932/1-675 Len: 689 Check: 4212 Weight: 1.00 Name: ENSBTAP00000004510/1-674 Len: 689 Check: 9935 Weight: 1.00 Name: ENSTTRP00000014462/1-674 Len: 689 Check: 2588 Weight: 1.00 Name: bmy_18218T0/1-653 Len: 689 Check: 8571 Weight: 1.00 Name: BACU020310/1-674 Len: 689 Check: 1279 Weight: 1.00 // 1 50 ENSP00000289932/1-675 MESGTSSPQP PQLDPLDAFP QKGLEPGDIA VLVLYFLFVL AVGLWSTVKT ENSBTAP00000004510/1-674 MESSASSPPL TQSDPLEAFP RRTLEAGDIA VLVLYFLFVL AVGLWSTVKT ENSTTRP00000014462/1-674 MESSPSSPQP TRPDPLEAFP QRTLEPGDIA VLVLYFLFVL AVGLWSTVKT bmy_18218T0/1-653 MESSPSGPQP TRSDPLEAFP QRTLEPGDIA VLVLYFLFVL AVGLWSTVKT BACU020310/1-674 MESSPSSPQP TRSDPLEAFP QRTLEPGDIA VLVLYFLFVL AVGLWSTVKT 51 100 ENSP00000289932/1-675 KRDTVKGYFL AGGDMVWWPV GASLFASNVG SGHFIGLAGS GAATGISVSA ENSBTAP00000004510/1-674 KRDTVKGYFL AGGNMLWWPV GASLFASNVG SGHFVGLAGS GAAAGLSVTA ENSTTRP00000014462/1-674 KRDTVKGYFL AGGDMVWWPV GASLFASNVG SGHFIGLAGS GAAAGLSVTA bmy_18218T0/1-653 KRDTVKGYFL AGGDMVWWPV GASLFASNVG SGHFIGLAGS GAAAGLSVTA BACU020310/1-674 KRDTVKGYFL AGGDMVWWPV GASLFASNVG SGHFIGLAGS GAAAGLSVTA 101 150 ENSP00000289932/1-675 YELN------ --------GL FSVLMLAWIF LPIYIAGQVT TMPEYLRKRF ENSBTAP00000004510/1-674 YELN------ --------GL FFVLMLSWIF LPIYITGQVT TMPEYLRKRF ENSTTRP00000014462/1-674 YEFN------ --------GL FSVLMLAWIF LPIYIAGQVT TMPEYLRKRF bmy_18218T0/1-653 YEFNVRMLPG HGQPTLYPGL FSVLMLAWIF LPIYIAGQVT TMPEYLRKRF BACU020310/1-674 YEFN------ --------GL FSVLILAWIF LPIYIAGQVT TMPEYLRKRF 151 200 ENSP00000289932/1-675 GGIRIPIILA VLYLFIYIFT KISVDMYAGA IFIQQSLHLD LYLAIVGLLA ENSBTAP00000004510/1-674 GGNRIPIILA VLYLFIYIFT KISVDMYAGA IFIQQSLHVN LYLAIVGLLA ENSTTRP00000014462/1-674 GGNRIPVILA VLYLFIYIFT KISVDMYAGA IFIQQSLRLN LYLAIVGLLA bmy_18218T0/1-653 GGNRIPIILA VLYLFIYIFT KISVDMYAGA IFIQQSLHLN LYLAIVGLLA BACU020310/1-674 GGNRIPIILA VLYLFIYIFT KISVDMYAGA IFIQQSLHLN LYLAIVGLLA 201 250 ENSP00000289932/1-675 ITAVYTVAGG LAAVIYTDAL QTLIMLIGAL TLMGYSFAAV GGMEGLKEKY ENSBTAP00000004510/1-674 VTALYTIAGG LAAVIYTDAL QTLIMLIGAL ILMGYSFAAV GGLEGLEEKY ENSTTRP00000014462/1-674 ITALYTVAGG LAAVIYTDAL QTLIMLIGAL TLMGYSFAAV GGLEGLEEKY bmy_18218T0/1-653 ITALYTVAGG LAAVIYTDAL QTLIMLIGAL TLMGYSFAAV GGLEGLEEKY BACU020310/1-674 ITALYTVAGG LAAVIYTDAL QTLIMLVGAL TLMGYSFAAV GGLEALEEKY 251 300 ENSP00000289932/1-675 FLALASNRSE NSSCGLPRED AFHIFRDPLT SDLPWPGVLF GMSIPSLWYW ENSBTAP00000004510/1-674 FLAMASNRSG NSSCGLPRED AFHIFRDPVT SDLPWPGILF GMSIPSLWYW ENSTTRP00000014462/1-674 FLAVASNRSG NSSCGLPRED AFHIFRDPLT SDLPWPGILF GMSIPSLWYW bmy_18218T0/1-653 FLAVASNRSG NSSCGLPRED AFHIFRDPLT SDLPWPGILF GMSIPSLWYW BACU020310/1-674 FLAVASNRSG NSSCGLPRED AFHIFRDPLT SDLPWPGILF GMSIPSLWYW 301 350 ENSP00000289932/1-675 CTDQVIVQRT LAAKNLSHAK GGALMAAYLK VLPLFIMVFP GMVSRILFPD ENSBTAP00000004510/1-674 CTDQVIVQRT LAAKNLSHAK GGSLMAAYLK VLPLFIMVFP GMVSRVLFPD ENSTTRP00000014462/1-674 CTDQVIVQRT LAAKNLSHAK GGSLMAAYLK VLPLFIMVFP GMVSRVLFPD bmy_18218T0/1-653 CTDQVIVQRT LAAKNLSHAK GGSLMAAYLK VLPLFIMVFP GMVSRVLFPD BACU020310/1-674 CTDQVIVQRT LAAKNLSHAK GGSLMAAYLK VLPLFIMVFP GMVSRVLFPD 351 400 ENSP00000289932/1-675 QVACADPEIC QKICSNPSGC SDIAYPKLVL ELLPTGLRGL MMAVMVAALM ENSBTAP00000004510/1-674 EVACADPEIC RKVCSNPAGC SDIAYPKLVL ELLPTGLRGL MMAVMVAALT ENSTTRP00000014462/1-674 QVACADPEIC QKVCSNPAGC SDIAYPKLVL ELLPTGLRGL MMAVMVAALM bmy_18218T0/1-653 QVACADPEIC QKVCSNPAGC SDIAYPKLVL ELLPTGLRGL MMAVMVAALM BACU020310/1-674 QVACADPEIC QKVCSNPAGC SDIAYPKLVL ELLPTGLRGL MMAVMVAALM 401 450 ENSP00000289932/1-675 SSLTSIFNSA STIFTMDLWN HLRPRASEKE LMIVGRVFVL LLVLVSILWI ENSBTAP00000004510/1-674 SSLTSIFNSA STIFTMDLWN HLRPRASEKE LMIVGRVFVL LLVLVSILWI ENSTTRP00000014462/1-674 SSLTSIFNSA STIFTMDLWN HLRPRASEKE LMIVGRVFVL LLVLVSILWI bmy_18218T0/1-653 SSLTSIFNSA STIFTMDLWN HLRPRASEKE LMIVGRVFVL LLVLVSILWI BACU020310/1-674 SSLTSIFNSA STIFTMDLWN HLRPRASEKE LMIVGRVFVL LLVLVSILWI 451 500 ENSP00000289932/1-675 PVVQASQGGQ LFIYIQSISS YLQPPVAVVF IMGCFWKRTN EKGAFWGLIS ENSBTAP00000004510/1-674 PVVQASQGGQ LFIYIQSISS YLQPPVAVVF IMGCFWKRAN EKGAFFGLVL ENSTTRP00000014462/1-674 PVVQASQGGQ LFIYIQSISS YLQPPVAVVF IMGCFWKRTN EKGAFFGLIL bmy_18218T0/1-653 PVVQASQGGQ LFIYIQSISS YLQPPVAVVF IMGCFWKRTN EKGAFFGLIL BACU020310/1-674 PVVQASQGGQ LFIYIQSISS YLQPPVAVVF IMGCFWKRTN EKGAFFGLIL 501 550 ENSP00000289932/1-675 GLLLGLVRLV LDFIYVQPRC DQPDERPVLV KSIHYLYFSM ILSTVTLITV ENSBTAP00000004510/1-674 GLLLGLVRLI LDFIYVQPRC DQLDERPAVV KDVHYLYFSM ILSSVTLITV ENSTTRP00000014462/1-674 GLLLGLVRLV LDFIYVQPRC DQPDERPAVV KDVHYLYFSM ILSSVTLITV bmy_18218T0/1-653 GLLLGLVRLV LDFIYVQPRC DQPDERPAV- ---------- ---------- BACU020310/1-674 GLLLGLVRLV LDFIYVQPRC DQPDERPAVV KDVHYLYFSM ILSSVTLITV 551 600 ENSP00000289932/1-675 STVSWFTEPP SKEMVSHLTW FTRHDPVVQK EQAPPAAPLS LTLSQNGMPE ENSBTAP00000004510/1-674 CAVSWFTEPP SKEMVSRLTW FTRHDPVVQK EQVPSATPPP LTLSQNGTPE ENSTTRP00000014462/1-674 SVVSWFTEPP SKEMVSRLTW FTRHDPMVQK EQVSPATPPP LTLSQNRTPE bmy_18218T0/1-653 ---------- ----VSRLTW FTRRDPMVQK EQVPPATPPP LTLSQNRTPE BACU020310/1-674 SAVSWFTEPP SKEMVSRLTW FTRRDPMVQK EQVPPATPPP LTLSQNRTPE 601 650 ENSP00000289932/1-675 ASSSSSVQFE MVQENTSKTH SCDMTPKQSK VVKAILWLCG IQEKGKEELP ENSBTAP00000004510/1-674 ASGTN-TQFE MVQENLSKTH SCDMTTKRSK VVKAILWLCG VENKGKEQAP ENSTTRP00000014462/1-674 ASRTN-VQFE IVQENMPQNH SCDMTKKQSK VVKAILWLCG VENKGKEEMP bmy_18218T0/1-653 ASRTN-IQFE IVQENMPKTH SCDMTKKQSK VVKALLWLCG VENKGKEELP BACU020310/1-674 ASGTN-TQFE IVQENMPKTH SCDMTEKQSK VVKALLWLCG VENKGKEELP 651 700 ENSP00000289932/1-675 ARAEAIIVSL EENPLVKTLL DVNLIFCVSC AIFIWGYFA ENSBTAP00000004510/1-674 SRADPIIVSL EENPLVKTLL DLNLIICISC AIFLWGYFA ENSTTRP00000014462/1-674 SRTDPVIVSL DENPLVKTLL DVNLIICVSC AIFLWGYFA bmy_18218T0/1-653 SRADPVIVSL DENPLVKTLL DVNLIICISC AIFLWGYFA BACU020310/1-674 SRADPVIVSL DENPLVKTLL DVNLIICISC AIFLWGYFA