KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:24:16 2014 Check: 00 .. Name: ENSTTRP00000012784/1-921 Len: 965 Check: 4064 Weight: 1.00 Name: ENSP00000373948/1-941 Len: 965 Check: 3702 Weight: 1.00 Name: ENSBTAP00000004561/1-942 Len: 965 Check: 2621 Weight: 1.00 Name: bmy_22109T0/1-546 Len: 965 Check: 3126 Weight: 1.00 Name: BACU016871/1-794 Len: 965 Check: 6362 Weight: 1.00 // 1 50 ENSTTRP00000012784/1-921 MSTAEAAATA QARAPGSTIK FSSPRQIPVV GVVTEDEEAQ GVFKPVDLNC ENSP00000373948/1-941 MWTEEAGATA EAQESGIRNK SSSSSQIPVV GVVTEDDEAQ DVFKPMDLNR ENSBTAP00000004561/1-942 MSRAEAAEPA EAPEPSSRIK FSSPRQIPIV GVVTEDEEVQ GAFKSMDLNR bmy_22109T0/1-546 ---------- ---------- ---------- ---------- -----MDLNR BACU016871/1-794 ---------- ---------- ---------- ---------- ---------- 51 100 ENSTTRP00000012784/1-921 VIKLLEETG- DDLEEKQLKS VKKMVQCYQN GLPLRDLAQI FKILNLCAGK ENSP00000373948/1-941 VIKLLEETDK DGLEEKQLKF VKKLVQCYQN GLPLRDLAQI FKILNLCSGK ENSBTAP00000004561/1-942 VIKLFEETGK DDLEERQLKS VKKLVQCYQN GFPLRDLAQI FKILNLCAEK bmy_22109T0/1-546 VIKLLEETGK ---------- ---------- --PLRDLAQI FKILNLCAGK BACU016871/1-794 ---------- ---------- ---------- ---------- ---------- 101 150 ENSTTRP00000012784/1-921 IKKQPHFIEP ACNILKLCGX XXXXXXXXXX XXXXXXXXXX XXXX------ ENSP00000373948/1-941 IKNQPRFIES AYDIIKLCGL PFLKKKVSDE ITYAEDTANS IALL------ ENSBTAP00000004561/1-942 IKTQPHFIEP AYNIIKLCGL PFLKKKASDE ITYAEDTANS IGLL------ bmy_22109T0/1-546 IKKQPHFXEP AYNILKLCGL PFLKKKVSDE ITYAEDTANS IALLDISDLR BACU016871/1-794 ---------- ---------- ---------- ---------- ---------- 151 200 ENSTTRP00000012784/1-921 ---------- -------XDL MIIPSSELRI QICKCIIDFY HAEPPKQHIT ENSP00000373948/1-941 ---------- -------GDL MKIPSSELRI QICKCIVDFY HAEPPKKHIP ENSBTAP00000004561/1-942 ---------- -------GDL MKIQNSELRI QICKCIIDFY HAEPPKKHIT bmy_22109T0/1-546 AGFWKRMKEK HSFIFLAGDL MIIPSSELRI QICKCIIDFY HAEPPKKHIT BACU016871/1-794 ---------- ---------- MIIPSSELRI QICKCIIDFY HAEPPKKHIT 201 250 ENSTTRP00000012784/1-921 G--------- --------LA KIMVQSLVLF ENQLVEKLWV LK-LQHLSAS ENSP00000373948/1-941 GYQQASSSYK IQMAEVGGLA KTMVQSMTLL ENQLVEKLWV LKVLQHLSTS ENSBTAP00000004561/1-942 GYQQASSSYK IKMAEVGELA KTMIQSLELL ENQLVEKLWV LKALQHLSTS bmy_22109T0/1-546 GYQQASSSYK IKMAEVGGLA KTMVQSLALL ENQLVEKLWV LKALQHLSAS BACU016871/1-794 GYQQASSSYK IKMAEVGGLA KTMVQSLALL ENQLVEKLWV LKALQHLSAS 251 300 ENSTTRP00000012784/1-921 EVNCTLMVKA QAASGICAHL NDPDPSGQLL FRSSEILWNL LEKSSKEEII ENSP00000373948/1-941 EVNCTIMMKA QAASGICTHL NDPDPSGQLL FRSSEILWNL LEKSSKEEVI ENSBTAP00000004561/1-942 EVNCTLMVKA QAASGICAHL NDPDPSGQLL FRSSEILWNL LEKSSKEEII bmy_22109T0/1-546 EVNCTLMVKA QAASGICAHL NDPDPSGQLL FRSSEILWNL LEKSSKEEII BACU016871/1-794 EVNCTLMVKA QAASGICAHL NDPDPSGQLL FRSSEILWNL LEKSSKEEII 301 350 ENSTTRP00000012784/1-921 QQLSNLECLL ALKKVFKNLF TRGLSHYDRQ L-NDILVITT XXXXXXXXXX ENSP00000373948/1-941 QQLSNLECLL ALKEVFKNLF MRGFSHYDRQ LRNDILVITT IIAQNPEAPM ENSBTAP00000004561/1-942 QQLSNLKCLL ALKEVFKNLF IRGVSHYDRQ LRNDILVITT IISQNPGAPM bmy_22109T0/1-546 QQLSNLECLL ALKKVFKNLF TRGLSHYDRQ LRNDILVITT IISQNPGAPM BACU016871/1-794 QQLSNLECLL ALKKVLKNLF TRGLSHYDRQ LRNDILVITT IISQNPGAPM 351 400 ENSTTRP00000012784/1-921 XECGFTRDLI LFATFNEVKS QNPLVKGLKF SNSYEDFELK KLLFNIIVTF ENSP00000373948/1-941 IECGFTKDLI LFATFNEVKS QNLLVKGLKL SNSYEDFELK KLLFNVIVIL ENSBTAP00000004561/1-942 IESGFTRDLI LFATFNEVKS QNPLVKGLKL SNSYEDFELK KLLFNIIVIL bmy_22109T0/1-546 IECGFTRDLI LFATFNEVKS QNPLVKGLKF SNSYEDFELK KLLFNIIVTF BACU016871/1-794 IECGFTRDLI LFATFNEVKS QNPLVKGLKF SNSYEDFELK KLLFNIIVTF 401 450 ENSTTRP00000012784/1-921 CKDLSTIQLL IDGKVILALF TYVKKPEKHK IVEWSAAQYE ELQLHAIATL ENSP00000373948/1-941 CKDLPTVQLL IDGKVILALF TYVKKPEKQK IIDWSAAQHE ELQLHAIATL ENSBTAP00000004561/1-942 CKDLSTIQLL IDGKVILALF TYVKRPEKHK ILEWSAAQYE ELQLHAIATL bmy_22109T0/1-546 CKDLSTIQLL IDGKVILALF TYVKKPEKHK IVEWSAAQYE ELQLHAIATL BACU016871/1-794 YKDLSTIQLL IDGKVILALF TYVKKPEKHK IVEWSAAQYE ELQLHAIATL 451 500 ENSTTRP00000012784/1-921 SSVAPFLIDE YMLYQGNAHV LAFLEWCDSE XXXXXXXXXX XXXXXXXXXX ENSP00000373948/1-941 SSVAPLLIEE YMSCQGNARV LAFLEWCESE DPFFSHGNSF HGTGGRGNKF ENSBTAP00000004561/1-942 SSVAPFLIDE YLFYKGNDQV LEFLAWCDNE DSFFSHGNSF HGAGGRGNKF bmy_22109T0/1-546 SSVAPFLIDE YMLYQGNAHV LAFLEWCDSE DSFFSHGNSF HGTGGRGNKF BACU016871/1-794 SSVAPFLIDE YMLYQGNAHV LAFLEWCDSE DSFFSHGNSF HGPGGRGNKF 501 550 ENSTTRP00000012784/1-921 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXIFKN IISKYNDKEE ENSP00000373948/1-941 AQMRYSLRLL RAVVYLEDET VNKDLCEKGT IQQMIGIFKN IISKPNEKEE ENSBTAP00000004561/1-942 AQMRYSLRLL RAMVYLENDT INKDLCENGA IQQLIGIFKN TISKYNDKEE bmy_22109T0/1-546 AQMRYSLRLL RAMVYLEHET INKDLCEKRA IQQLIGIFKN TISKYNDKEE BACU016871/1-794 AQMRYSLRLL RAMVYLEHET INKDLCEKRA IQQLIGIFKN TISKYNDKEE 551 600 ENSTTRP00000012784/1-921 AILLEIQSDI LLILSGLCEH HIPRKEIFGT EGVDIILHVM KTDPKKLQSG ENSP00000373948/1-941 AIVLEIQSDI LLILSGLCEN HIQRKEIFGT EGVDIVLHVM KTDPRKLQSG ENSBTAP00000004561/1-942 AILLEIQSDI LLILSGLCEY HIPGKEIFGT EGVDIILHVM KTDPKKLQSG bmy_22109T0/1-546 AILLEIQSDI LLILSGLCEH HIPRKV---- ---------- ---------- BACU016871/1-794 AIVLEIQSDI LLILSGLCEH HIPRKEIFGT EGVDIILHVM KTDPKKLQSG 601 650 ENSTTRP00000012784/1-921 LGYNVLLFST LDSIWCCILG CYPSEDYFLE KEGIFLLLDL MA-LNQKKFC ENSP00000373948/1-941 LGYNVLLFST LDSIWCCILG CYPSEDYFLE KEGIFLLLDL LA-LNQKKFC ENSBTAP00000004561/1-942 LGYNVLLYST LDSIWCCILG CYPSEDYFLE KEGIFLLLDL LAKLNQKKFC bmy_22109T0/1-546 ---------- ------CM-- ---------- ---------- ---------- BACU016871/1-794 LGYNVLLFST LDSIWCCILG CYPSEDYFLE KEGIFLLLDL MA-LNQKKFC 651 700 ENSTTRP00000012784/1-921 NLILGIMVEF CDNPKTVAYV NAWRGKKDQT AASLLIKLWR KEEKELGVKR ENSP00000373948/1-941 NLILGIMVEF CDNPKTAAHV NAWQGKKDQT AASLLIKLWR KEEKELGVKR ENSBTAP00000004561/1-942 NLILGIMVEF CDNPKTAAHV NAWRGKKDQT AASLLIKLWR KEEKELGVKR bmy_22109T0/1-546 ---------- ---------- ---------- ---------- ---------- BACU016871/1-794 NLILGIMVEF CDNPKTAAHV NAWRGKKDQT AASLLIKLWR KEEKELGVKR 701 750 ENSTTRP00000012784/1-921 DKHGKIVDTK KPLFTSFQEE QKITPLPANC PTIAVMDVAE NIRAKIYAVL ENSP00000373948/1-941 DKNGKIIDTK KPLFTSFQEE QKIIPLPANC PSIAVMDVSE NIRAKIYAIL ENSBTAP00000004561/1-942 DKYGKIVDTK KPLFTSFQEE QKIIPLPANC PTIAVMDVAE NIRAKIYAVL bmy_22109T0/1-546 ---------- ---------- ------PVN- ---------- ---------- BACU016871/1-794 DKHGKIVDTK KPLFTSFQEE QKITPLPANC PTIAVMDVAE NIRAKIYAVL 751 800 ENSTTRP00000012784/1-921 GKLDFENLPG LSAEDFVTLC IIHRYLDFKI GEIWNEIYEE IKLEKLRPVT ENSP00000373948/1-941 GKLDFENLPG LSAEDFVTLC IIHRYLDFKI GEIWNEIYEE IKLEKLRPVT ENSBTAP00000004561/1-942 GKLDFENLPG LSAEDFVTLC IIHRYLDFKI GEIWNEIYEE IKLEKLRPVT bmy_22109T0/1-546 ---------- ---QSFVQIS QSHNTMNFFL VNV------- ---------- BACU016871/1-794 GKLDFENLPG LSAEDFVTLC IIHRYLDFKI GEIWNEIYEE IKLENLRPVT 801 850 ENSTTRP00000012784/1-921 TDKKILESII TASENIGKMV ASLQSEMIES QACQDVQNEQ KVYTKVQATH ENSP00000373948/1-941 TDKKALEAIT TASENIGKMV ASLQSDIIES QACQDMQNEQ KVYAKIQATH ENSBTAP00000004561/1-942 TDKKILESIT AASENIGKMV VSLQSEMIES QARQDVQNEQ KVYTKIQATH bmy_22109T0/1-546 ---------- ---------- ---------- ---------- ---------- BACU016871/1-794 TDKKILESII TASENIGKMV ASLQSEMIES QARQDVQNEQ KVYTKVQATH 851 900 ENSTTRP00000012784/1-921 KQRELANKSW EYFLARTSNV KTLKKAKRLQ EKGIESSRYT EHPPNAVFHP ENSP00000373948/1-941 KQRELANKSW EDFLARTSNA KTLKKAKSLQ EKAIEASRYH KRPQNAIFHQ ENSBTAP00000004561/1-942 KQRELANKSW ENFLARTSNA KTLKKAKRLQ EKAIESSRYG ERPPNAIFHR bmy_22109T0/1-546 ------HKCW CF-------- ---------- ---------- -------FNL BACU016871/1-794 KQRELANKSW ENFLARTSNV KTLKKAKRLQ EKGIESSRYS ERPPNAIFHR 901 950 ENSTTRP00000012784/1-921 TDIKGLHTTV PSGGVVTVES TPALLVGGPL ADTDIALKKL PIRGGALQRV ENSP00000373948/1-941 THIKGLNTTV PSGGVVTVES TPARLVGGPL VDTDIALKKL PIRGGALQRV ENSBTAP00000004561/1-942 TDIKGLNATV PSGGVVTVES TPARLVGGPL ADTDIALKKL PIRGGALQKV bmy_22109T0/1-546 TKI------- ---------- ---------- ---------- ---------- BACU016871/1-794 TDIEGLNTTV PSGGVVTVES TPARLVGGPL ADTDIALKKL PIRGGALQRV 951 1000 ENSTTRP00000012784/1-921 KAVKTVNEPE KSVPA ENSP00000373948/1-941 KAVKIVDAPK KSIPT ENSBTAP00000004561/1-942 KAVKTVDEPK KSDPA bmy_22109T0/1-546 ---------- ----- BACU016871/1-794 KAVKTVNEPE KSVPT