KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:24:17 2014 Check: 00 .. Name: ENSP00000361097/1-949 Len: 950 Check: 7953 Weight: 1.00 Name: ENSBTAP00000004563/1-932 Len: 950 Check: 4493 Weight: 1.00 Name: ENSTTRP00000007692/1-935 Len: 950 Check: 8160 Weight: 1.00 Name: bmy_16892T0/1-935 Len: 950 Check: 6165 Weight: 1.00 Name: BACU005455/1-753 Len: 950 Check: 4582 Weight: 1.00 // 1 50 ENSP00000361097/1-949 MILSLLFSLG GPLGWGLLGA WAQASSTSLS DLQSSRTPGV WKAEAEDTGK ENSBTAP00000004563/1-932 MILTLLFGLG GPLGWGMLGT WAQAPGTSFS DPHSPQPPGV WRAEAEDSSG ENSTTRP00000007692/1-935 MILTLLLSVG GPLGWGLLGA WAQVPSTRFS DPHSPRPPGV WRAEAED--R bmy_16892T0/1-935 MILTLLLSVG GPLGWGLLGA WAQVPSTRFS DPHSPRPPGV WRAEAED--R BACU005455/1-753 MILTLLLSVG GPLGWGLLGA WAQVPSTRFS DPHSPRPPGV WTAEAED--R 51 100 ENSP00000361097/1-949 DPVGRNWCPY PMSKLVTLLA LCKTEKFLIH SQQPCPQGAP DCQKVKVMYR ENSBTAP00000004563/1-932 DPVRRNWCPY QKSRLVTFIA ACKTEKFLVH SQQPCPQGAP NCQKVKVMYR ENSTTRP00000007692/1-935 DPVRRNWCPY QKSRLVTFVA ACKTEKFLVH SQQPCPHGAP DCQKVKVMYR bmy_16892T0/1-935 DPVRRNWCPY QKSRLVTFVA ACKTEKFLVH SQQPCPHGAP DCQKVKVMYR BACU005455/1-753 DPVRRNWCPY QKSRLVTFAA ACKTEKFLVH SQQPCPHGAP DCQKVKVMYR 101 150 ENSP00000361097/1-949 MAHKPVYQVK QKVLTSLAWR CCPGYTGPNC EHHDSMAIPE PADPGDSHQE ENSBTAP00000004563/1-932 VAHKPVYQVK QKVLASVAWR CCPGFAGPDC QHHDPMAIPE PEDPGDSLQE ENSTTRP00000007692/1-935 VAHKPVYQVK QKVLASVAWR CCPGFVGPDC QHHDPRAIPE PEDPGDSLQE bmy_16892T0/1-935 VAHKPVYQVK QKVLASVAWR CCPGFVGPDC QHHDPRAIPE PEDPDDSLQE BACU005455/1-753 VAHKPVYQVK QKVLASVAWR CCPGFVGPDC QHHDPRAIPE PEDPGDSLQE 151 200 ENSP00000361097/1-949 PQDGPVSFKP GHLAAVINEV EVQQEQQEHL LGDLQNDVHR VADSLPGLWK ENSBTAP00000004563/1-932 PWDGPVDFES GHPAAEIRST ---VERQERR LGDLQNDIHQ MADSLPGLWE ENSTTRP00000007692/1-935 PWDGPVDFEP GHRDADISDM ---VEQQERR LGDLQNDIHQ VADSLPGLWK bmy_16892T0/1-935 PWDGPVDFEP GHRDAEISNM ---VEQQERR LGDVQNDIHQ VADSLPGLWK BACU005455/1-753 PWDGPVDFEP GHRDAEISNM ---VEQQERR LGDVQNDIHQ VADSLPGLWK 201 250 ENSP00000361097/1-949 ALPGNLTAAV MEANQTGHEF PDRSLEQVLL PHVDTFLQVH FSPIWRSFNQ ENSBTAP00000004563/1-932 AWASNLTVAT TEANQTELEF PGRALEQVLL PHINTFLQGH LSPMWRSFNQ ENSTTRP00000007692/1-935 ALASNLTVSI TEANQTELEF PGRSLEQVLL PHINTFLQGH LSPMWRSFNQ bmy_16892T0/1-935 ALASNLTVAI TEANQTELEF PGRSLEQVLL PHINTFLQGH LSPMWRSFNQ BACU005455/1-753 ALASNLTVAI TEANQTELEF PGRSLEQVLL PHINTFLQGH LSPMWRSFNQ 251 300 ENSP00000361097/1-949 SLHSLTQAIR NLSLDVEANR QAISRVQDSA VARADFQELG AKFEAKVQEN ENSBTAP00000004563/1-932 SLHSLSQVIR NLSLDVEANQ QALKRVQESS VARADFQELG TKFETKVQEN ENSTTRP00000007692/1-935 SLHSLSQAIR NLSLDVEANR QALKRVQESS VARADFQDLG AKFETKVQEN bmy_16892T0/1-935 SLNSLSQAIR NLSLDVEANR QALKRVQESS VARADFQDLG AKFETKVQEN BACU005455/1-753 SLNSLSQAIR NLSLDVEANR QALQRVQESS VARADFQDLG AKFETKVQEN 301 350 ENSP00000361097/1-949 TQRVGQLRQD VEDRLHAQHF TLHRSISELQ ADVDTKLKRL HKAQEAPGTN ENSBTAP00000004563/1-932 AQRVGQLRQD VEDRLHAQRL SLHQSLSEVQ TDVDIKLKKL LKAQESVAIN ENSTTRP00000007692/1-935 TQRVGQLRQD VAGHLHAQHL SLHQSLLEVQ ADVDTKLKKL LKAQESPGVN bmy_16892T0/1-935 AQRVGQLRQD VEDHLHAQHL SLHQSLLEVQ ADVDTKLKKL LKAQESPGVN BACU005455/1-753 AQRVGQLRQD VEGHLHAQHL SLHQSLLEVQ ADVDTKLKKL LKAQESPGVN 351 400 ENSP00000361097/1-949 GSLVLATPGA GARPEPDSLQ ARLGQLQRNL SELHMTTARR EEELQYTLED ENSBTAP00000004563/1-932 SSLVLAAAGA AARPEPESLN ARLGQLQRNL SALHVATAHR EEALRSTLAD ENSTTRP00000007692/1-935 GSLVLVAAGA AARPEPESLQ ARLGQLQRNL SALHVTTAHR EEELQGTLAD bmy_16892T0/1-935 GSLVLVAAGA AARPEPESLQ ARLGQLQRNL SALHVATAHR EEELQSTLAD BACU005455/1-753 GSLVLVAAGA AARPEPESLQ ARLGQLQRNL SALHVATAHR EEELQSTLAD 401 450 ENSP00000361097/1-949 MRATLTRHVD EIKELYSESD ETFDQISKVE RQVEELQVNH TALRELRVIL ENSBTAP00000004563/1-932 MKATLAWHVD EIKELYSESD DTFDEISKLQ RQVQELEVNH TALRELRVIL ENSTTRP00000007692/1-935 MKATLAQHVD EIKELYLESD DTYEQISKVE RQVQELQVNH TALRELRVIL bmy_16892T0/1-935 MKATLAQHVD EIKELYLESD DTYEQISKVE RQVQELQVNH TALRELRVIL BACU005455/1-753 MKATLAQHVD EIKELYLESD DTYEQISKVE RQVQELQVNH TALRELRVIL 451 500 ENSP00000361097/1-949 MEKSLIMEEN KEEVERQLLE LNLTLQHLQG GHADLIKYVK DCNCQKLYLD ENSBTAP00000004563/1-932 MEKSLIMEEN KEDMERQLLE LNLTLQHLQG AHADLIKYVK DCNCQKLYFD ENSTTRP00000007692/1-935 MEKSLIMEEN KEDMERQLLE LNLTLQHLQG GHADLIKYVK DCNCQKLYFD bmy_16892T0/1-935 MEKSLIMEEN KEDMERQLLE LNLTLQHLQG AHADLIKYVK DCNCQKLYFD BACU005455/1-753 MEKSLIMEEN KEDMERQLLE LNLTLQHLQG AHADLIKYVK DCNCQKLYFD 501 550 ENSP00000361097/1-949 LDVIREGQRD ATRALEETQV SLDERRQLDG SSLQALQNAV DAVSLAVDAH ENSBTAP00000004563/1-932 LDVIREDQRD TTRALEETQV TLDERRQQDG SSLQALRDTV ASLSLAVDTQ ENSTTRP00000007692/1-935 LDVIREGQRD TTRALEETQV SLDERRQRDG SSLQALSSTV AALSLAVDAH bmy_16892T0/1-935 LDVIREGQRD TTRALEETQV SLDERRQRDG SSLQALSGTV AALSLAVDAH BACU005455/1-753 LDVIREGQRD TTRALEETQV SLDERRQRDG SSLQALSSTV AAL------- 551 600 ENSP00000361097/1-949 KAEGERARAA TSRLRSQVQA LDDEVGALKA AAAEARHEVR QLHSAFAALL ENSBTAP00000004563/1-932 QAEGERARAE AARLRSQLRA LGGEVSALQA AETEIRRDIR QLHSSFSALL ENSTTRP00000007692/1-935 QAAAERARAD AARLRSQLRT LGSEVSALRA AEGEMRREIR RLHGSFAALL bmy_16892T0/1-935 RAEAERARAD AARLRSQLRT LGGEVSALRA AEAEMRREIR RLHGSFAALL BACU005455/1-753 ---------- ---------- ---------- ---------- ---------- 601 650 ENSP00000361097/1-949 EDALRHEAVL AALFGEEVLE EMSEQTPGPL PLSYEQIRVA LQDAASGLQE ENSBTAP00000004563/1-932 EDALRHEAVL AALFGEEVME EMSEEGPGTL PLRYEQIRVA LMDAASGLQE ENSTTRP00000007692/1-935 EDALRHEAVL AALFGEEVME DMSEEAPSPL PLRYEQIRTA LLDAASGLQE bmy_16892T0/1-935 EDALRHEAVL AALFGEEVME DMSEEAPGPL PLRYEQIRTA LLDAASGLQE BACU005455/1-753 ---------- ---------- ---------- ---------- ---------- 651 700 ENSP00000361097/1-949 QALGWDELAA RVTALEQASE PPRPAEHLEP SHDAGREEAA TTALAGLARE ENSBTAP00000004563/1-932 QALGWDALAA RVTALEQASG ARRQTARLEP SRAASPEEVG -----GLAQE ENSTTRP00000007692/1-935 QALGWDALAA RVTALERASG TSGQAERLEP NRDASPAAAG GPDLAGLVQE bmy_16892T0/1-935 QALGWDALAA RVTALERASG TSGQAERLEP NRDASPAAAG GPDLAGLARE BACU005455/1-753 ---------- ---------- ---------- ---------- ---------- 701 750 ENSP00000361097/1-949 LQSLSNDVKN VGRCCEAEAG AGAASLNASL HGLHNALFAT QRSLEQHQRL ENSBTAP00000004563/1-932 LQRLSSDLER VGRCCEA--- SWVSSLNSSL EGLRGELSTT ERGLERHQRL ENSTTRP00000007692/1-935 LQRLSSRMES VRECCEA--- SWASSFNSSL EGLRGELSTT EHDLQRHQRL bmy_16892T0/1-935 LQRLSSHMER VGRCCEA--- SWASSFNNSL EGLREELSTT ERGLQRHQRL BACU005455/1-753 ---------- ---------- --------SL EGLREELSTT ERGLQQHQRL 751 800 ENSP00000361097/1-949 FHSLFGNFQG LMEANVSLDL GKLQTMLSRK GKKQQKDLEA PRKRDKKEAE ENSBTAP00000004563/1-932 FHSLFGNFQG LVAANVSLDL QKLQAMLNRK GKKQQKGLEA PKRRDRKQVE ENSTTRP00000007692/1-935 FHSLFGNFKE LLVANISLDL GKLQAILSRK GKKQQKGLEA PRRREQKQVE bmy_16892T0/1-935 FHSLFGNFQE LLVANVSLDL GKLQAMLIRK GKKQQKGLEA PRRRDRKQVE BACU005455/1-753 FHSLFGNFQE LLVANVSLDL GKLQAMLIRK GKKQQKGLEA PRRRDRKQVE 801 850 ENSP00000361097/1-949 PLVDIRVTGP VPGALGAALW EAGSPVAFYA SFSEGTAALQ TVKFNTTYIN ENSBTAP00000004563/1-932 SLEDARVKGP A-------LW EAGSPVAFYA SFSEGTTALQ TVKFNTAYIN ENSTTRP00000007692/1-935 SLEDAHVKGP V-------LW DAGSPVAFYA SFSEGTDALQ TVKFNTTYIN bmy_16892T0/1-935 SLEDAHVKGP V-------LW DAGSPVAFYA SFSEGTDALQ TVKFNTTYIN BACU005455/1-753 SLEDAHVKGP V-------LW DTGSPVAFYA SFSEGTDALQ TVKFNTTYIN 851 900 ENSP00000361097/1-949 IGSSYFPEHG YFRAPERGVY LFAVSVEFGP GPGTGQLVFG GHHRTPVCTT ENSBTAP00000004563/1-932 VGSSYFPEHG YFRAPERGVY LFAVSIEFGP GPGTGQLVFG GHHRTPVYTT ENSTTRP00000007692/1-935 IGSSYFPEHG YFRASERGVY LFAVSIEFGP GPGTGQLVFG GHRRTPVYTT bmy_16892T0/1-935 IGNSYFPEHG YFRASERGVY LFAVSIEFGP GPGTGQLVFG GHRRTPVYTT BACU005455/1-753 IGNSYFPEHG YFRASERGVY LFAVSIEFGP GPGTGQLVFG GHRRTPVYTT 901 950 ENSP00000361097/1-949 -GQGSGSTAT VFAMAELQKG ERVWFELTQG SITKRSLSGT AFGGFLMFKT ENSBTAP00000004563/1-932 EEQRGGSPAT TFAMAELQKG ERVWFELTQG SIMKRSPPGT AFGGFLMFKT ENSTTRP00000007692/1-935 KEQRGGSPAT TFAMAELQKG ERVWFELTQG SIMKRSPPGT AFGGFLIFKT bmy_16892T0/1-935 EEQRGGSPAT TFAMAELQKG ERVWFELTQG SIMKRSPPGT AFGGFLIFKT BACU005455/1-753 EEQRGGSPAT TFAMAELQKG ERVWFELTQG SIMKRSPPGT AFGGFLIFKT