KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:24:18 2014 Check: 00 .. Name: ENSP00000264009/1-492 Len: 765 Check: 903 Weight: 1.00 Name: ENSBTAP00000004568/1-490 Len: 765 Check: 2012 Weight: 1.00 Name: bmy_05279T0/1-557 Len: 765 Check: 7310 Weight: 1.00 Name: BACU018095/1-652 Len: 765 Check: 4414 Weight: 1.00 Name: ENSTTRP00000009717/1-438 Len: 765 Check: 2252 Weight: 1.00 // 1 50 ENSP00000264009/1-492 MQEAPAALPT EPGPSPVPAF LGKLWALVGD PGTDHLIRWS PSGTSFLVSD ENSBTAP00000004568/1-490 MQEAPAALPT EPGPSPVPAF LGKLWALVGD PGTDHLIRWS PSGTSFLVSD bmy_05279T0/1-557 MQDAPAALPT EPGPSPVPAF LGKLWALVGD PGTDHLIRWS PSGTSFLVSD BACU018095/1-652 MQEAPAALPT EPGPSPVPAF LGKLWALVGD PGTDHLIRWS PSGTSFLVSD ENSTTRP00000009717/1-438 MQEAPAALPT EPGPSPVPAF LGKLWALVGD PGTDHLIRWS PSGTSFLVSD 51 100 ENSP00000264009/1-492 QSRFAKEVLP QYFKHSNMAS FVRQLNMYGF RKVVSIEQGG LLRPERDHVE ENSBTAP00000004568/1-490 QSRFAKEVLP QYFKHSNMAS FVRQLNMYGF RKVVSIEQGG LLRPERDHVE bmy_05279T0/1-557 QSRFAKEVLP QYFKHSNMAS FVRQLNMYGF RKVVSIEQGG LLRPERDHVE BACU018095/1-652 QSRFAKEVLP QYFKHSNMAS FVRQLNMYGF RKVVSIEQGG LLRPERDHVE ENSTTRP00000009717/1-438 QSRFAKEVLP QYFKHSNMAS FVRQLNMYGF RKVVSIEQGG LLRPERDHVE 101 150 ENSP00000264009/1-492 FQHPSFVRGR EQLLERVRRK VPALRGDDGR WRPEDLGRLL GEVQALRGVQ ENSBTAP00000004568/1-490 FQHPSFVRGR EQLLERVRRK VPALRGDDGR WRPEDLGRLL GEVQAFRGVQ bmy_05279T0/1-557 FQHPSFVRGR EQLLERVRRK VPALRGDDGR WRPEDLGRLL GEVQAFRGVQ BACU018095/1-652 FQHPSFVRGR EQLLERVRRK VPALRGDDGR WRPEDLGRLL GEVQAFRGVQ ENSTTRP00000009717/1-438 FQHPSFVRGR EQLLERVRRK VPALRGDDGR WRPEDLGRLL GEVQAFRGVQ 151 200 ENSP00000264009/1-492 ESTEARLREL RQ-------- ---------- ---------- ---------- ENSBTAP00000004568/1-490 ESTEARLREL RQ-------- ---------- ---------- ---------- bmy_05279T0/1-557 ESTEARLREL RQCGGGGGGG WGGGRGGSGR EGTGFQAFLG SSFLSRALAP BACU018095/1-652 ESTEARLREL RQ-------- ---------- ---------- ---------- ENSTTRP00000009717/1-438 ESTEARLREL RQ-------- ---------- ---------- ---------- 201 250 ENSP00000264009/1-492 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000004568/1-490 ---------- ---------- ---------- ---------- ---------- bmy_05279T0/1-557 PSRPMGRAEE VCCLWTDDHP TGRGFRPAIL WGVVTGRTLR CLSTLPRLSS BACU018095/1-652 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000009717/1-438 ---------- ---------- ---------- ---------- ---------- 251 300 ENSP00000264009/1-492 -QNEILWREV VTLRQSHGQQ HRVIGKLIQC LFGPLQAGPS NAGGKRKLSL ENSBTAP00000004568/1-490 -QNEILWREV VTLRQSHGQQ HRVIGKLIQC LFGPLQAGSG SAGAKRKLSL bmy_05279T0/1-557 RQNEILWREV VTLRQSHGQQ HRVIGKLIQC LFGPLQAGSS STGAKRKLSL BACU018095/1-652 -QNEILWREV VTLRQSHGQQ HRVIGKLIQC LFGPLQAGSS STGTKRKLSL ENSTTRP00000009717/1-438 -QNEILWREV VTLRQSHGQQ HRVIGKLIQC LFGPLQAGSS SAGTKRKLSL 301 350 ENSP00000264009/1-492 MLDEGSSCPT PAKFNTCPLP GALLQDPYFI QSPLPETNLG L-SPHRARGP ENSBTAP00000004568/1-490 MLDEG--CPS PAKFNTCPLP GALLQDPYFI QSPLPETTLG LSSPHRARGP bmy_05279T0/1-557 MLDEG--CPT PAKFNACPLP GALLQDPYFI QSPLPETTLG LSSPHRARGP BACU018095/1-652 MLDEG--CPT PAKFNACPLP GALLQDPYFI QSPLPETTLG LSSPHRARGP ENSTTRP00000009717/1-438 MLDE---CPT PAKFNACPLP GALLQ-PYFI QSPLPETTLG LSSPHRARGP 351 400 ENSP00000264009/1-492 IISDIPEDSP SPEGTRLSPS SDGRREKGLA LLKEEPASPG GDGEAGLALA ENSBTAP00000004568/1-490 IISDLPEDSP SPEGTRLSPS SGGRREKGLA LLKEEPASPG GEGEAGLALA bmy_05279T0/1-557 IISDIPEDSP SPEGTRLSPS SGGRREKGLA LLKEEPASPG GEGEAGLALA BACU018095/1-652 IISDIPEDSP SPEGTRLSPS SSGRREKGLA LLKEEPASPG GEGEAGLALA ENSTTRP00000009717/1-438 IISDIPEDSP SPEGTRLSPS SGGRREKGLA LLKEEPASPG GEGEAGLALA 401 450 ENSP00000264009/1-492 PNECDFCVTA PPPLPVAVVQ AILEGKGSFS PEGPRNAQQP EPGDPREIPD ENSBTAP00000004568/1-490 PNECDFCVTA PPPLPVAVVQ AILEGKGSFS PEGPRNAQQP EPRGPREVPD bmy_05279T0/1-557 PNECDFCVTA PPPLPVAVVQ AILEGKGSLS PEGPRSAQQP EPRGPREVPD BACU018095/1-652 PNECDFCVTA PPPLPVAVVQ AILEGKGSLS PEGPRSAQQP EPRGPREVPD ENSTTRP00000009717/1-438 PNECDFCVTA PPPLPVAVVQ AILEGKGSLS PEGPRSAQQP EPRGPREVPD 451 500 ENSP00000264009/1-492 RGPLGLESGD RSPESLLPPM LLQPPQESVE PAGPLDVLGP SLQGREWTLM ENSBTAP00000004568/1-490 RGPLDLERGG RSPDSLLPPM LLRAPPESVE PAGPLDVLGS SLQGREWTLM bmy_05279T0/1-557 RGPLDLERGA RSPESLLPPM LLRAPPESVE PAGPLD---- ---------- BACU018095/1-652 RGPLDLERGA RSPESLLPPM LLRAPPESVE PAGPLD---- ---------- ENSTTRP00000009717/1-438 RGPLDLERGA RSPESLLPPM LLRAPPEGVE PAGPLDVLGT SLQGREWTLM 501 550 ENSP00000264009/1-492 DLDMELSLMQ PLVPERGEPE LAVKGLNSPS PG-------- ---------- ENSBTAP00000004568/1-490 DLDMELSLLQ PLVPEKCETE LAVKGLNSPG PG-------- ---------- bmy_05279T0/1-557 --------LQ PLVPEKGETE LAVKGLNSPG PG-------- ---------- BACU018095/1-652 --------LQ PLVPEKGETE LAVKGLNSPG PALTMGNTQE RPSETIDRER ENSTTRP00000009717/1-438 DLDMELSLLQ PLVPEKDETE LAVKGLNSPG P--------- ---------- 551 600 ENSP00000264009/1-492 ----KDPTLG APLLLD---V QAALGGPALG L--------- ---------- ENSBTAP00000004568/1-490 ----KDSTLG APLLLD---I PAALGGPALS L--------- ---------- bmy_05279T0/1-557 ----KDSMLG APLLLD---V QAALGGPALS L--------- ---------- BACU018095/1-652 KRLVETLQSD SGLLLDALLA RGVLTGPEYE ALDALPDAER RVRRLLLLVQ ENSTTRP00000009717/1-438 ---------- ---------- ---------- ---------- ---------- 601 650 ENSP00000264009/1-492 ---------- ---------- ---------- ---------- ---PGALTIY ENSBTAP00000004568/1-490 ---------- ---------- ---------- ---------- ---PGALTIY bmy_05279T0/1-557 ---------- ---------- ---------- ---------- ---PGALTIY BACU018095/1-652 SKGEAACQEL LSCAQRTVRA PDPAWDWQHV GTGYRERSYD PPCPGHWTPE ENSTTRP00000009717/1-438 ---------- ---------- ---------- ---------- ---------- 651 700 ENSP00000264009/1-492 STPESRTASY L--------- ---------- ---------- ---------- ENSBTAP00000004568/1-490 SSPESR-ASY L--------- ---------- ---------- ---------- bmy_05279T0/1-557 STPESR-ASY L--------- ---------- ---------- ---------- BACU018095/1-652 EAGSGTACPW LPRASDCDEA RGPEDSEAAQ SGTFEETEPE LEAETSEGAE ENSTTRP00000009717/1-438 ---------- ---------- ---------- ---------- ---------- 701 750 ENSP00000264009/1-492 ---------- -GPEASPSP- ---------- ---------- ---------- ENSBTAP00000004568/1-490 ---------- -GAGDNPSP- ---------- ---------- ---------- bmy_05279T0/1-557 ---------- -GPGANPSP- ---------- ---------- ---------- BACU018095/1-652 PELEPQMDPE PEPGTEPEPE LEPEPDLGAG DESEAQAVPL ETPDPGPQWD ENSTTRP00000009717/1-438 ---------- ---------- ---------- ---------- ---------- 751 800 ENSP00000264009/1-492 ---------- ----- ENSBTAP00000004568/1-490 ---------- ----- bmy_05279T0/1-557 ---------- ----- BACU018095/1-652 KGQTLGPCST ALLSS ENSTTRP00000009717/1-438 ---------- -----