KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:24:18 2014 Check: 00 .. Name: ENSTTRP00000008232/1-565 Len: 920 Check: 3141 Weight: 1.00 Name: ENSP00000418707/1-426 Len: 920 Check: 3937 Weight: 1.00 Name: bmy_04035T0/1-434 Len: 920 Check: 2377 Weight: 1.00 Name: BACU011835/1-857 Len: 920 Check: 776 Weight: 1.00 Name: ENSBTAP00000004569/1-335 Len: 920 Check: 3327 Weight: 1.00 // 1 50 ENSTTRP00000008232/1-565 MMAEQVKCAS AGGGSGAGSG PVVNAELEVK KLQELVRKLE KQNEQLRSRA ENSP00000418707/1-426 ---------- ---------- ---------M VGVGLCLRL- ----LLFFRF bmy_04035T0/1-434 ---------- ---------- -------MEA ARRSLCFRLE QVITLKLVRS BACU011835/1-857 -----MTLSI ECRDENYARV VLHRRNSHDA SDRKTNERDE PKATISWYRS ENSBTAP00000004569/1-335 ---------- ---------- ---------- ---------- ---------- 51 100 ENSTTRP00000008232/1-565 ASAAAAPHLL LLPPPPPAAP PPAGLQPLAP RSPPAAAAAA SG-------- ENSP00000418707/1-426 KRTLDRICVL FL--LGWHRK PRSDG----- ---------- ---------- bmy_04035T0/1-434 TAIAQNENTI NLDSVQIELS HRGGM----- ---------- ---------- BACU011835/1-857 DGTLDRQSWF PPPPPGYKAA PSTGASGREP TVHPPIPPKP SSSVSSPNQL ENSBTAP00000004569/1-335 ---------- ---------- ---------- ---------- ---------- 101 150 ENSTTRP00000008232/1-565 ---------- ---------- ---------- ---------- ---------- ENSP00000418707/1-426 ---------- ---------- ---------- ---------- ---------- bmy_04035T0/1-434 ---------- ---------- ---------- ---------- ---------- BACU011835/1-857 RQDNRPKSLE NLLVVNTRTD KDGKGKQDLD GLIKVNPETN KNIKSSEQDL ENSBTAP00000004569/1-335 ---------- ---------- ---------- ---------- ---------- 151 200 ENSTTRP00000008232/1-565 ---------- ---------- ---------- ---------- ---------- ENSP00000418707/1-426 ---------- ---------- ---------- ---------- ---------- bmy_04035T0/1-434 ---------- ---------- ---------- ---------- ---------- BACU011835/1-857 DELINVSPKA VKNTAGNQDL DKLIKVNPET LSNNQRNRDL NNLIKVNPEV ENSBTAP00000004569/1-335 ---------- ---------- ---------- ---------- ---------- 201 250 ENSTTRP00000008232/1-565 ---------- ---------- ---------- ---------- ---------- ENSP00000418707/1-426 ---------- ---------- ---------- ---------- ---------- bmy_04035T0/1-434 ---------- ---------- ---------- ---------- ---------- BACU011835/1-857 IRSNQRDQDL ENLIEVNSNM SKSKNERQDG QVSGSTEALI SPSSRTTAYS ENSBTAP00000004569/1-335 ---------- ---------- ---------- ---------- ---------- 251 300 ENSTTRP00000008232/1-565 ---------- ---------- ---------- ---------- ---------- ENSP00000418707/1-426 ---------- ---------- ---------- ---------- ---------- bmy_04035T0/1-434 ---------- ---------- ---------- ---------- ---------- BACU011835/1-857 YEAWKALRSV IEMDMCTYCR KPLGTEAKMI LNELQICCHS TCFKCEICKQ ENSBTAP00000004569/1-335 ---------- ---------- ---------- ---------- ---------- 301 350 ENSTTRP00000008232/1-565 ---------- ---------- ---------- ---------- ---------- ENSP00000418707/1-426 ---------- ---------- ---------- ---------- ---------- bmy_04035T0/1-434 ---------- ---------- ---------- ---------- ---------- BACU011835/1-857 PLENLQAGDS IWICRQTIHC EHCYSQVVGN HVFDKVFSVN RHFLSETKQT ENSBTAP00000004569/1-335 ---------- ---------- ---------- ---------- ---------- 351 400 ENSTTRP00000008232/1-565 ---------- ---------- --GLGPAFPG TYCLPGPAPS LLCSLAQPPE ENSP00000418707/1-426 ---------- ---------- ---------- ---------- ---------- bmy_04035T0/1-434 ---------- ---------- ---------- ---------- ---------- BACU011835/1-857 NNIPEDKKLY VGSSKTFPSS EKSLSPLQWC RHVLDNPTPE MEAARRSLCF ENSBTAP00000004569/1-335 ---------- ---------- ---------- ---------- ---------- 401 450 ENSTTRP00000008232/1-565 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSP00000418707/1-426 ---------- ---------- ---------- ---------- ---------- bmy_04035T0/1-434 ---------- ---------- ---------- ---------- ---------- BACU011835/1-857 RLE------- ---------- ---------- ---------- ---------- ENSBTAP00000004569/1-335 ---------- ---------- ---------- ---------- ---------- 451 500 ENSTTRP00000008232/1-565 XXXXXXXXXX XXXXXLYVGS SKTFPSSEKS LSPLQWCRHV LDNPTPEMEA ENSP00000418707/1-426 ---------S LFIERLYIGS SKTFTSSEKS LTPLQWCRHV LDNPTPEMEA bmy_04035T0/1-434 ---------E ASRWRSLFPS NVSLAFPYSP VARLSPYSNG INTPSFS-KT BACU011835/1-857 ---------Q ASRWRSLFPS NVSLAFPYSP VARLSPYSNG INTPSFS-KT ENSBTAP00000004569/1-335 ---------- ---------- ---------- ---------- ---------- 501 550 ENSTTRP00000008232/1-565 ARRSLCFRLE QGYTSRGSPL SPQSSIDXXX XXXXXXXXXX XXXXXXXXXX ENSP00000418707/1-426 ARRSLCFRLE QGYTSRGSPL SPQSSIDSEL STSELEDDSI SMGYKLQDLT bmy_04035T0/1-434 SNKAILTPER TGYTSRGSPL SPQSSIDSEL STSELEDDSI SMGYKLQDLT BACU011835/1-857 SNKAILTPER TGYTSRGSPL SPQSSIDSEL STSELEDDSI SMGYKLQDLT ENSBTAP00000004569/1-335 ---------- --YTSRGSPL SPQSSIDSEL STSELEDDSI SMGYKLQDLT 551 600 ENSTTRP00000008232/1-565 XXXXXXXXXX XXL-QDYAST SASVSRPSSX XXXXXXXXXX XXXXXXXXXX ENSP00000418707/1-426 DVQIMARLQE ESLRQDYAST SASVSRHSSS VSLSSGKKGT CSDQEYDQYS bmy_04035T0/1-434 DVQIMARLQE ESLRQDYAST SASVSRHSSS VSLNSGKKGT CSDQEYDRFS BACU011835/1-857 DVQIMARLQE ESLRQDYAST SASVSRHSSS VSLNSGKKGT CSDQEYDRFS ENSBTAP00000004569/1-335 DVQIMARLQE ESLRQDYAST SASVSRHSSS VSLNSGKKGT CSDQEYDRFS 601 650 ENSTTRP00000008232/1-565 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSP00000418707/1-426 LEDEEEFDHL PPPQPRLPRC SPFQRGIPHS QTFSSIRECR RSPSSQYFPS bmy_04035T0/1-434 LEDEEEFDHL PPPQPRLPRC SPFQRGIPHS QTFSSIRECR RSPGSQYFPS BACU011835/1-857 LEDEEEFDHL PPPQPRLPRC SPFQRGIPHS QTFSSIRECR RSPGSQYFPS ENSBTAP00000004569/1-335 LEDEEEFDHL PPPQPRLPRC SPFQRGIPHS QTFSSIRECR RSPSSQYFPS 651 700 ENSTTRP00000008232/1-565 XXXXXXXXXX XXXXXXXXXX XXXX-XXKLR RSMPNLARMP STTAVSSNGS ENSP00000418707/1-426 NNYQQQQYYS PQAQTPDQQP NRTN-GDKLR RSMPNLARMP STTAISSNIS bmy_04035T0/1-434 NNYQQQQYYS PQAQTPDQQP NRTS-GDKLR RSMPNLARMP STTAVSSNGS BACU011835/1-857 NNYQQQQYYS PQAQTPDQQP NRTN-GDKLR RSMPNLARMP STTAVSSNGS ENSBTAP00000004569/1-335 NNYQQQQYYS PQVQTPDQQP NRTNGGDKLR RSMPNLARMP STTTISSNGS 701 750 ENSTTRP00000008232/1-565 SPVTVRNSQS FDSSLHGAAN GISRIQSCIP SPGQLQHRIH SVGHFPVSVR ENSP00000418707/1-426 SPVTVRNSQS FDSSLHGAGN GISRIQSCIP SPGQLQHRVH SVGHFPVSIR bmy_04035T0/1-434 SPVTVRNSQS FDSSLHGAAN GLSRIQSCIP SPGQLQHRIH SVGHFPVSVR BACU011835/1-857 SPVTVRNSQS FDSSLHGAAN GISRIQSCIP SPGQLQHRIH SVGHFPVSVR ENSBTAP00000004569/1-335 SPVTVRNSQS FDSSLHGAAN GISRIQSCIP SPGQLQHRIH SVGHFPASVR 751 800 ENSTTRP00000008232/1-565 QPLKATAYVS PTVQGSSNMP LSNGLQLYSN TGIPAPNKAA ASGIVGRSAL ENSP00000418707/1-426 QPLKATAYVS PTVQGSSNMP LSNGLQLYSN TGIPTPNKAA ASGIMGRSAL bmy_04035T0/1-434 QPLKATAYVS PTVQGSSNMP LSNGLQLYSN TGIPAPNKAA ASGITGRSAL BACU011835/1-857 QPLKATAYVS PTVQGSSNMP LSNGLQLHSN TGIPAPSKAA ASGVTGRSAL ENSBTAP00000004569/1-335 QPLKATAYVS PTVQGSSNAP LSNSLQLYSN TGIPTPTKAA ASGIMGRSAL 801 850 ENSTTRP00000008232/1-565 PRPSLAINGS NLPRSKIAQP VRS------- ---------- ---------- ENSP00000418707/1-426 PRPSLAINGS NLPRSKIAQP VRS------- ---------- ---------- bmy_04035T0/1-434 PRPSLAINGS NLPRSKIAQP VRS------- ---------- ---------- BACU011835/1-857 PRPSLAINGS NLPRSKIAQP VRSIVSGPGP ICRHSDLIAA GCGSVIDLLV ENSBTAP00000004569/1-335 PRPSLAINGS NLPRSKIAQP VRS------- ---------- ---------- 851 900 ENSTTRP00000008232/1-565 ---------- ---------- ---------- ---------- ------FLQP ENSP00000418707/1-426 ---------- ---------- ---------- ---------- ------FLQP bmy_04035T0/1-434 ---------- ---------- ---------- ---------- ------FLQP BACU011835/1-857 HIQHAWQRAE TWAFHQMSTW KAQKYEAHLG RCQHVVTAAV AESRSNFLQP ENSBTAP00000004569/1-335 ---------- ---------- ---------- ---------- ------FLQP 901 950 ENSTTRP00000008232/1-565 PKPLSSLSTL RDGNWRDGCY ENSP00000418707/1-426 PKPLSSLSTL RDGNWRDGCY bmy_04035T0/1-434 PKPLSSLSTL RDGNWRDGCY BACU011835/1-857 PKPLSSLSTL RDGNWRDGCY ENSBTAP00000004569/1-335 PKPLSSLSTL RDGNWRDGCY