KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:24:21 2014 Check: 00 .. Name: BACU016818/1-411 Len: 1233 Check: 4142 Weight: 1.00 Name: ENSTTRP00000008143/1-1179 Len: 1233 Check: 328 Weight: 1.00 Name: bmy_18039T0/1-889 Len: 1233 Check: 1155 Weight: 1.00 Name: ENSP00000396103/1-1184 Len: 1233 Check: 9815 Weight: 1.00 Name: ENSBTAP00000004603/1-702 Len: 1233 Check: 3220 Weight: 1.00 // 1 50 BACU016818/1-411 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000008143/1-1179 MEVDTEERRH RTRSKGLRVP VEPAIQELFS CPTPGCDGSG HVSGKYARHR bmy_18039T0/1-889 ---------- ---------- ---------- ---------- --------MQ ENSP00000396103/1-1184 MEVDTEEKRH RTRSKGVRVP VEPAIQELFS CPTPGCDGSG HVSGKYARHR ENSBTAP00000004603/1-702 ---------- ---------- ---------- ---------- ---------- 51 100 BACU016818/1-411 SVYGCPLAKK RKTQDKQPQE PAPKRKPFAV KADSSSVDEC YDSDGTEDGD ENSTTRP00000008143/1-1179 SVYG-PVAKK RKTQDKQPQE PAPKRKPFAV KADSSSVDEC YDSDGTEDGD bmy_18039T0/1-889 SLQTPPVLLL GVRQPRRTQR LVTRRKSRAL L--SQMLTQC PLMPQISPTS ENSP00000396103/1-1184 SVYGCPLAKK RKTQDKQPQE PAPKRKPFAV KADSSSVDEC DDSDGTEDMD ENSBTAP00000004603/1-702 SVYGCPLAKK RKTQDKQPQE PAPKRKPFTV KADSSSVDEC YDSDGSEDAD 101 150 BACU016818/1-411 DKEEDE-EED DSDEDDEQRE DEDEDDE--- ---------- ---------- ENSTTRP00000008143/1-1179 EKDEAE-EED GSDEDDEPRD DDDDDDE--- ---------- ---------- bmy_18039T0/1-889 RQSPPH---- LLCGPGLPGD LPPGVQGSFT VRVFMRHRIL MVPVRVQAWL ENSP00000396103/1-1184 EKEEDE-GEE YSEDNDEPGD EDEEDEE--- ---------- ---------- ENSBTAP00000004603/1-702 EKEEDEDEED ESDEDEEQRE DEEEDED--- ---------- ---------- 151 200 BACU016818/1-411 GDREEEEEME EEDEEEDEDG EDVEE----D EDDEDDEEDE DEDEDENEGH ENSTTRP00000008143/1-1179 GGRDEDIEDE DEDGEDGEDD DDDD-----D EEDDEEDDDD EDDDEENEGH bmy_18039T0/1-889 GPPASPSQVV ALNVNSGNSS FAAGVLMAYR AVSAPRFLSA AAVLGPAEGH ENSP00000396103/1-1184 GDREEEEEIE EEDEDDDEDG EDVE-----D EEEEEEEEEE EEEEEENEDH ENSBTAP00000004603/1-702 GDREDEEEMD EEDEDEEDRE EE-------E EDEDEEDEEE DEDDEDNEDH 201 250 BACU016818/1-411 PLNCHSTRMM QDVEKDDNNN DEYDNYDELV A--------- ---------- ENSTTRP00000008143/1-1179 QLNCHSARIM QDAEKDDNNN DEYDNYDELV AKSLLNLGKI AEDAAYRART bmy_18039T0/1-889 QLNCHSTRIM QDAEKDDNNN DEYDNYDELV AKSLLNLGKI AEDAAYRART ENSP00000396103/1-1184 QMNCHNTRIM QDTEKDDNNN DEYDNYDELV AKSLLNLGKI AEDAAYRART ENSBTAP00000004603/1-702 QLGCHGARAL QDAEKDDNNN EEYDNYDELV AKSLLNLGKI AEDAAYRART 251 300 BACU016818/1-411 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000008143/1-1179 ESEMNSNTSH SLEDDSDKNE TPGRKGELSL DLDSDVVRET VDSLKLLAQG bmy_18039T0/1-889 ESEMNSNTSH SLEDDSDKNE TPGRKGELSL DLDSDVVRET VDSLKLLAQG ENSP00000396103/1-1184 ESEMNSNTSN SLEDDSDKNE NLGRKSELSL DLDSDVVRET VDSLKLLAQG ENSBTAP00000004603/1-702 ESEMNSSTSH SLEDDSDKTE VPGRKGELSL DLDSDVVRET VDSLKLLAQG 301 350 BACU016818/1-411 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000008143/1-1179 HGAVLGDHAG ERGYADALAP PESRSLNYTT LGKAANNGLA EKLVEESDEE bmy_18039T0/1-889 HGAVLGDHAG DRGYADVLAP PDGRSLTYGA LGKAANNGLA EKLVEESDEE ENSP00000396103/1-1184 HGVVLSENMN DRNYADSMSQ QDSRNMNYVM LGKPMNNGLM EKMVEESDEE ENSBTAP00000004603/1-702 HGAVLGDHAG DRAYADALAP PDGRTLSYGL LGKPANNGLA DKLVEESDEE 351 400 BACU016818/1-411 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000008143/1-1179 VCLSSLECLR NQCFDLARKL SEGSPQERPP QPGAGPRPHG RQDDDFPGRT bmy_18039T0/1-889 VCLSSLECLR NQCFDLARKL SESSPQERPP QPGAGPRPHG RQDDDFPGRT ENSP00000396103/1-1184 VCLSSLECLR NQCFDLARKL SETNPQERNP QQNMNIRQHV RPEEDFPGRT ENSBTAP00000004603/1-702 VCLSSLECLR NQCFDLARKL SEGSPQERPP PPGAGPRAHG RPEDDFPGRT 401 450 BACU016818/1-411 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000008143/1-1179 PDRSYSDMMN LMRLEEQLSP RPRTFSSCVK EDG-YRERED DATSVNSDRS bmy_18039T0/1-889 PDRSYSDMMN LMRLEEQLSP RPRTFSSCVK EDG-YRERED DATSVNSDRS ENSP00000396103/1-1184 PDRNYSDMLN LMRLEEQLSP RSRVFASCAK EDG-CHERDD DTTSVNSDRS ENSBTAP00000004603/1-702 PDRSYSDMMN LMRLEEQLSP RPRTFSSCAK EDGGYRERDD DAASVTSDRS 451 500 BACU016818/1-411 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000008143/1-1179 EEXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX bmy_18039T0/1-889 EEGFDMTKGN LTLLEKAIAL ETERAKAMRE KMAVEAGRRD SLRSYEDQSP ENSP00000396103/1-1184 EEVFDMTKGN LTLLEKAIAL ETERAKAMRE KMAMEAGRRD NMRSYEDQSP ENSBTAP00000004603/1-702 EEVFDMTKGN LTLLEKAIAL ETERAKAMRE KMALEAGRRD SLRSFEDQSP 501 550 BACU016818/1-411 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000008143/1-1179 XXXXXXXXXX XXXXXXXXXX XXXXXPSRAE KKESKCPTPG CDGTGHVTGL bmy_18039T0/1-889 RPLPGEERKP KAGDSHVKKP YYGKDPSRAE KKESKCPTPG CDGTGHVTGL ENSP00000396103/1-1184 RQLPGEDRKP KSSDSHVKKP YY--DPSRTE KKESKCPTPG CDGTGHVTGL ENSBTAP00000004603/1-702 RPLPGEERKP KSADSHVKKP YY--DPSRAE KKESKCPTPG CDGTGHVTGL 551 600 BACU016818/1-411 ---------- ---------- ---------- ---------- ---------N ENSTTRP00000008143/1-1179 YPHHRSLSGC PHKDRVPPEI LAMHENVLKC PTPGCTGRGH VNSNRNSHRS bmy_18039T0/1-889 YPHHRSLSGC PHKDRVPPEI LAMHENVLKC PTPGCTGRGH VNSNRNSHRS ENSP00000396103/1-1184 YPHHRSLSGC PHKDRVPPEI LAMHESVLKC PTPGCTGRGH VNSNRNSHRS ENSBTAP00000004603/1-702 YPHHRSLSGC PHKDRVPPEI LAMHENVLKC PTPGCTGRGH VNSNRNSHRS 601 650 BACU016818/1-411 LSGCPIAAAE KLAKAQEKHQ SCDVSKSNQA SDRVLRPMCF VKQLEIPHYG ENSTTRP00000008143/1-1179 LSGCPIAAAE KLAKAQEKHQ SCDVSKSNQA SDRVLRPMCF VKQLEIPHYG bmy_18039T0/1-889 LSGCPIAAAE KLAKAQEKHQ SCDVSKSNQA SDRVLRPMCF VKQLEIPHYG ENSP00000396103/1-1184 LSGCPIAAAE KLAKAQEKHQ SCDVSKSSQA SDRVLRPMCF VKQLEIPQYG ENSBTAP00000004603/1-702 LSGCPIAAAE KLAKAQEKHQ GCDVSKSSQA SDRVLRPMCF VKQLEIPHYG 651 700 BACU016818/1-411 YRNSVPTTTP RSNLAKELEK YSKTSFEYNS YDSHTYGKRA IAPKVQTRDI ENSTTRP00000008143/1-1179 YRNSVPTITP RSNLAKELEK YSRS---FYS YDSHTYGRAX XXXXXXXXXX bmy_18039T0/1-889 YRNSVPTTTP RSNLAKELEK YSKTSFEYNS YDSHTYGKRA IAPKVQTRDI ENSP00000396103/1-1184 YRNNVPTTTP RSNLAKELEK YSKTSFEYNS YDNHTYGKRA IAPKVQTRDI ENSBTAP00000004603/1-702 YRNSVPTTTP RSNLAKELEK YSKTSFEYNT YDSHTYGKRA IAPKVQTRDI 701 750 BACU016818/1-411 SPKGY-DGQL LLEIPALPPL FSCSMLSHIH LCFQKLLP-- QPDLSDTGPP ENSTTRP00000008143/1-1179 XXXXX-XXKR Y--------- --CKDASPSS SAASTYAP-S SSNLSCGGGS bmy_18039T0/1-889 SPKGY-DAKR Y--------- --CKDASPSS SAASTYAP-- SSNLSCGGGS ENSP00000396103/1-1184 SPKGYDDAKR Y--------- --CKDPSPSS SSTSSYAPSS SSNLSCGGGS ENSBTAP00000004603/1-702 SPKGF-DAKR Y--------- --CKDASPSS STTSTYAPSS SSNLSCGGGS 751 800 BACU016818/1-411 ALSGLLPTSS ---------- ---ELLVQNE GHRCTLLRVS PEPHRPVPAG ENSTTRP00000008143/1-1179 SASSTCSKSS FDYTHDMEAA HMAATAILNL TTRC---REM PQNLSTKPQD bmy_18039T0/1-889 SASSTCSKSS FDYTHDMEAA HMAATAILNL STRC---REM PQNLSTKPQD ENSP00000396103/1-1184 SASSTCSKSS FDYTHDMEAA HMAATAILNL STRC---REM PQNLSTKPQD ENSBTAP00000004603/1-702 SASSTCSKSS FDYTHDVEAA HMAATAILNL STRC---REM PQNLSTKPQ- 801 850 BACU016818/1-411 QTGECREHSA SERVRDQPRI RTLIRHDKPR EQTA------ --FGVTEQDI ENSTTRP00000008143/1-1179 L---CAARNP DMEVDENGTL DLSMNKQRPR EGCCPILTPL EPMSPQQQAV bmy_18039T0/1-889 L---CAARNP DMEVDENGTL DLSMNKQRPR EGCCPILTPL EPMSPQQQAV ENSP00000396103/1-1184 L---CATRNP DMEVDENGTL DLSMNKQRPR DSCCPILTPL EPMSPQQQAV ENSBTAP00000004603/1-702 ---------- ---------- ---------- ---------- ---------- 851 900 BACU016818/1-411 LMKKQLLFPL GLCICISV-- ---------- ---------- ---------- ENSTTRP00000008143/1-1179 MNSRCFQLSE GDCWDLPVDY TKMKPRRIDE DEPKEITPED LDPFQEALEE bmy_18039T0/1-889 MNSRCFQLSE GDCWDLPVDY TKMKPRRIDE DEPKEITPED LDPFQEALEE ENSP00000396103/1-1184 MNNRCFQLGE GDCWDLPVDY TKMKPRRIDE DESKDITPED LDPFQEALEE ENSBTAP00000004603/1-702 ---------- ---------- ---------- ---------- ---------- 901 950 BACU016818/1-411 --YLRESTAV DPRKE----- ---------- ---------- ---------- ENSTTRP00000008143/1-1179 RRYPGEVTIP SPKPKYPQCK ESKKDLITLS GCPLADKSIR SMLATSSQEL bmy_18039T0/1-889 RRYPGEVTIP SPKPKYPQCK ESKKDLITLS GCPLADKSIR SMLATSSQEL ENSP00000396103/1-1184 RRYPGEVTIP SPKPKYPQCK ESKKDLITLS GCPLADKSIR SMLATSSQEL ENSBTAP00000004603/1-702 ---------- ---------- ---------- ---------- ---------- 951 1000 BACU016818/1-411 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000008143/1-1179 KCPTPGCDGS GHITGNYASH RSLSGCPRAK KSGIRIAQSK EDKEDQEPIR bmy_18039T0/1-889 N--------- ---------- ---------- ---------- ---------- ENSP00000396103/1-1184 KCPTPGCDGS GHITGNYASH RSLSGCPRAK KSGIRIAQSK EDKEDQEPIR ENSBTAP00000004603/1-702 ---------- ---------- ---------- ---------- ---------- 1001 1050 BACU016818/1-411 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000008143/1-1179 CPVPGCDGQG HITGKYASHR SASGCPLAAK RQKDGYLNGS QFSWKSVKTE bmy_18039T0/1-889 ---------- ---------- ---------- ---------- --NKKDVSFE ENSP00000396103/1-1184 CPVPGCDGQG HITGKYASHR SASGCPLAAK RQKDGYLNGS QFSWKSVKTE ENSBTAP00000004603/1-702 ---------- ---------- ---------- ---------- ---------- 1051 1100 BACU016818/1-411 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000008143/1-1179 GMSCPTPGCD GSGHVSGSFL THRSLSGCPR ATSAMKKAKL SGEQMLTIRQ bmy_18039T0/1-889 KKKCL----- ---------- ---------- ---------- ---------- ENSP00000396103/1-1184 GMSCPTPGCD GSGHVSGSFL THRSLSGCPR ATSAMKKAKL SGEQMLTIKQ ENSBTAP00000004603/1-702 ---------- ---------- ---------- ---------- ---------- 1101 1150 BACU016818/1-411 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000008143/1-1179 RASNXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXI TTMESSLKTI bmy_18039T0/1-889 ---------- ---------- ---------- ---------- ---------- ENSP00000396103/1-1184 RASNGIENDE EIKQLDEEIK ELNESNSQME ADMIKLRTQI TTMESNLKTI ENSBTAP00000004603/1-702 ---------- ---------- ---------- ---------- ---------- 1151 1200 BACU016818/1-411 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000008143/1-1179 EEENKVIEQQ NESLLHELAN -SQSLIHSLA NIQLPHMDPI NEQNFDAYVT bmy_18039T0/1-889 ---------- ---------- ---------- ---------- ---------- ENSP00000396103/1-1184 EEENKVIEQQ NESLLHELAN LSQSLIHSLA NIQLPHMDPI NEQNFDAYVT ENSBTAP00000004603/1-702 ---------- ---------- ---------- ---------- ---------- 1201 1250 BACU016818/1-411 ---------- ---------- ---------- --- ENSTTRP00000008143/1-1179 TLTDMYTNQD RYQSPENKAL LENIKQAVRG IQV bmy_18039T0/1-889 ---------- ---------- ---------- --- ENSP00000396103/1-1184 TLTEMYTNQD RYQSPENKAL LENIKQAVRG IQV ENSBTAP00000004603/1-702 ---------- ---------- ---------- ---