KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:24:23 2014 Check: 00 .. Name: BACU001606/1-349 Len: 495 Check: 1108 Weight: 1.00 Name: ENSP00000282388/1-494 Len: 495 Check: 5811 Weight: 1.00 Name: ENSBTAP00000004621/1-438 Len: 495 Check: 5777 Weight: 1.00 Name: bmy_00348T0/1-491 Len: 495 Check: 7781 Weight: 1.00 Name: ENSTTRP00000006015/1-494 Len: 495 Check: 6709 Weight: 1.00 // 1 50 BACU001606/1-349 ---------- ---------- ---------M LDKKAVGTPV AAAPSSGFTP ENSP00000282388/1-494 MSTTLLSAFY DVDFLCKTEK SLANLNLNNM LDKKAVGTPV AAAPSSGFAP ENSBTAP00000004621/1-438 MSTTLLSAFY DIDFLCKTEK SLANLNLNNM LDKKAVGTPV ATAPSSGFTP bmy_00348T0/1-491 MSTTLLSAFY DIDFLCKTEK SLANLNLNNM LDKKAVGTPV AAAPSSGFTP ENSTTRP00000006015/1-494 MSTTLLSAFY DIDFLCKTEK SLANLNLNNM LDKKAVGTPV AAAPSSGFTP 51 100 BACU001606/1-349 GFLRRHSASN LHALAHPAPS PGSCSPKFPG AANGSTCGSA AAGGPASYG- ENSP00000282388/1-494 GFLRRHSASN LHALAHPAPS PGSCSPKFPG AANGSSCGSA AAGGPTSYGT ENSBTAP00000004621/1-438 GFLRRHSASN LHALAHPAPS PGSCSPKFPG AAN----GSA AAGGSASYGT bmy_00348T0/1-491 GFLRRHSASN LHALAHPAPS PGSCSPKFPG AANGSSCGSA AAGGPASYGT ENSTTRP00000006015/1-494 GFLRRHSASN LHALAHPAPS PGSCSPKFPG AANGSSCGSA AAGGPASYGT 101 150 BACU001606/1-349 ---PXXXXXX XXXXKENKFR DRSFSENGER SQHLLHLQQQ QK-GGGGSQI ENSP00000282388/1-494 LKEPSGGGGT ALLNKENKFR DRSFSENGDR SQHLLHLQQQ QK-GGGGSQI ENSBTAP00000004621/1-438 LKEPSGGGGT ALLNKENKFR DRSFSENGER SQHLLHLQQQ QK-GGGGSQI bmy_00348T0/1-491 LKEPSGGGGT ALLNKENKFR DRSFSENGER SQHLLHLQQQ QK-GGGGSQI ENSTTRP00000006015/1-494 LKEPSGGGGT ALLNKENKFR DRSFSDNGER SQHLLHLQQQ QQKGGGGSQI 151 200 BACU001606/1-349 NSTRYKTELC RPFEESGTCK YGEKCQFAHG FHELRSLTRH PKYKTELCRT ENSP00000282388/1-494 NSTRYKTELC RPFEESGTCK YGEKCQFAHG FHELRSLTRH PKYKTELCRT ENSBTAP00000004621/1-438 NSTRYKTELC RPFEESGTCK YGEKCQFAHG FHELRSLTRH PKYKTELCRT bmy_00348T0/1-491 NSTRYKTELC RPFEESGTCK YGEKCQFAHG FHELRSLTRH PKYKTELCRT ENSTTRP00000006015/1-494 NSTRYKTELC RPFEESGTCK YGEKCQFAHG FHELRSLTRH PKYKTELCRT 201 250 BACU001606/1-349 FHTIGFCPYG PRCHFIHNAD ERRPAPSGGA SGDLRTFSAR DALHLGFPRE ENSP00000282388/1-494 FHTIGFCPYG PRCHFIHNAD ERRPAPSGGA SGDLRAFGTR DALHLGFPRE ENSBTAP00000004621/1-438 FHTIGFCPYG PRCHFIHNAD ERRPAPSGGA SGDLRTFSAR DALHLGFPRE bmy_00348T0/1-491 FHTIGFCPYG PRCHFIHNAD ERRPAPSGGA SGDLRTFSAR DALHLGFPRE ENSTTRP00000006015/1-494 FHTIGFCPYG PRCHFIHNAD ERRPAPSGGA SGDLRTFSAR DALHLGFPRE 251 300 BACU001606/1-349 PRPKLHHSLS FSGFPSGHHQ PPGGLESPLL LDSPTSRTPP PPSCSSASSC ENSP00000282388/1-494 PRPKLHHSLS FSGFPSGHHQ PPGGLESPLL LDSPTSRTPP PPSCSSASSC ENSBTAP00000004621/1-438 PRPKLHHSLS FSGFPSGHHQ PPGGLESPLL LDSPTSRTPP PPSCSSA--- bmy_00348T0/1-491 PRPKLHHSLS FSGFPSGHHQ PPGGLESPLL LDSPTSRTPP PPSCSSASSC ENSTTRP00000006015/1-494 PRPKLHHSLS FSGFPSGHHQ PPGGLESPLL LDSPTSRTPP PPSCSSASSC 301 350 BACU001606/1-349 SSSASSCSSA X--------- ---------- ---------- ---------- ENSP00000282388/1-494 SSSASSCSSA SAASTPSGAP TCCASAAAAA AAALLYGTGG AEDLLAPGAP ENSBTAP00000004621/1-438 ---------- ---------- ---------- ------GTGG AEDLLAPGAP bmy_00348T0/1-491 SSSASSCSSA SAASTPSGAP TCCASAAAAA AAALLYGTGG AEDLLAPGAP ENSTTRP00000006015/1-494 SSSASSCSSA SAASTPSGAP TCCASAAAAA AAALLYGTGG AEDLLAPGAP 351 400 BACU001606/1-349 ---------- ---------- ---------- ---------- ---------- ENSP00000282388/1-494 CAACSSASCA NNAFAFGPEL SSLITPLAIQ THNFAAVAAA AYYRSQQQQQ ENSBTAP00000004621/1-438 CATCSSASCA NNAFAFGPEL SSLITPLAIQ THNFAAVAAA AYYRS--QQQ bmy_00348T0/1-491 CATCSSASCA NNAFAFGPEL SSLITPLAIQ THNFAAVAAA AYYRS---QQ ENSTTRP00000006015/1-494 CATCSSASCA NNAFAFGPEL SSLITPLAIQ THNFAAVAAA AYYRS-QQQQ 401 450 BACU001606/1-349 ---------- ---------- ---APPSPPF SFQLPRRLSE SPVFDAPPSP ENSP00000282388/1-494 QQGLAPPAQP PAPPSATLPA GAAAPPSPPF SFQLPRRLSD SPVFDAPPSP ENSBTAP00000004621/1-438 QQGLVPPAQP PAPPSAPLPA ---------- -FQLPRRLSE SPVFDAPPSP bmy_00348T0/1-491 QQGLVPPAQP PAPPSAPLPA SAAAPPSPPF SFQLPRRLSE SPVFDAPPSP ENSTTRP00000006015/1-494 QQGLVPPAQP PAPPSAPLPA SAAAPPSPPF SFQLPRRLSE SPVFDAPPSP 451 500 BACU001606/1-349 PDSLSDRDSY LSGSLSSGSL SGSESPSLDP GRRLPIFSRL SISDD ENSP00000282388/1-494 PDSLSDRDSY LSGSLSSGSL SGSESPSLDP GRRLPIFSRL SISDD ENSBTAP00000004621/1-438 PDSLSDRDSY LSGSLSSGSL SGSESPGLDP GRRLPIFSRL SISDD bmy_00348T0/1-491 PDSLSDRDSY LSGSLSSGSL SGSESPSLDP GRRLPIFSRL SISDD ENSTTRP00000006015/1-494 PDSLSDRDSY LSGSLSSGSL SGSESPSLDP GRRLPIFSRL SISDD