KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:24:25 2014 Check: 00 .. Name: ENSP00000202556/1-1090 Len: 1631 Check: 3380 Weight: 1.00 Name: ENSBTAP00000004631/1-1089 Len: 1631 Check: 5238 Weight: 1.00 Name: bmy_05901T0/1-1210 Len: 1631 Check: 8621 Weight: 1.00 Name: BACU006308/1-1566 Len: 1631 Check: 9824 Weight: 1.00 Name: ENSTTRP00000006057/1-1075 Len: 1631 Check: 2507 Weight: 1.00 // 1 50 ENSP00000202556/1-1090 MMPMILTVFL SNNEQILTEV PITPETTCRD VVEFCKEPGE GSCHLAEVWR ENSBTAP00000004631/1-1089 ---MILTVFL SNNEQILTEV PITPETTCRD VVEFCKEPGE GSCHLAEVWR bmy_05901T0/1-1210 ---MIMQINI HSNLSL---- ---------- ---FC----- ---------- BACU006308/1-1566 ---MILTVFL SNNEQILTEV PITPETTCRD VVEFCKEPGE GSCHLAEVWR ENSTTRP00000006057/1-1075 MMPMILTVFL SNNEQILTEV PITPETTCRD VVEFCKEPGE GSCHLAEVWR 51 100 ENSP00000202556/1-1090 GNERPIPFDH MMYEHLQKWG PRREEVKFFL RHEDSPTENS EQGGRQTQEQ ENSBTAP00000004631/1-1089 GNERPIPFDY MMYEHLQKWG PRREEVKFFL RHEDSPTESS EQGGRQTQEQ bmy_05901T0/1-1210 ---------- ---------- --------FL Q--------- ---------- BACU006308/1-1566 GNERPIPFDY FMYEHLQKWG PRREEVKFFL RHEDSPTESS EQGGRQTQEQ ENSTTRP00000006057/1-1075 GNERPIPFDY MMYEHLQKWG PRREEVKFFL RHEDSPTESS EQGGHQTQEQ 101 150 ENSP00000202556/1-1090 RTQRNVINVP GEKRTENGVG NPRVELTLSE LQDMAARQQQ QIENQQQMLV ENSBTAP00000004631/1-1089 RTQRNVTNVP GEKRTENGVG NPRVELTLSE LQDMAARQQQ QIENQQQMLV bmy_05901T0/1-1210 ---------- --------IG NPRVELTLSE LQDMAARQQQ QIENQQQMLV BACU006308/1-1566 RTQRNVINVP GEKRTENGIG NPRVELTLSE LQDMAARQQQ QIENQQQMLV ENSTTRP00000006057/1-1075 RTQRNVINVP GEKRTENGIG NPRVELTLSE LQDMAARQQQ QIENQQQMLV 151 200 ENSP00000202556/1-1090 AKEQRLHFLK QQERRQQQSI SENEKLQKLK ERVEAQENKL KKIRAMRGQV ENSBTAP00000004631/1-1089 AKEQRLHFLK QQERRQQQSI SENEKLQKLK ERVEAQENKL KKIRAMRGQV bmy_05901T0/1-1210 AKEQRLHFLK QQERRQQQSI SENEKLQKLK ERVEAQENKL KKIRAMRGQV BACU006308/1-1566 AKEQRLHFLK QQERRQQQSI SENEKLQKLK ERVEAQENKL KKIRAMRGQV ENSTTRP00000006057/1-1075 AKEQRLHFLK QQERRQQQSI SENEKLQKLK ERVEAQENKL KKIRAMRGQV 201 250 ENSP00000202556/1-1090 DYSKIMNGNL SAEIERFSAM FQEKKQEVQT AILRVDQLSQ QLEDLKKGKL ENSBTAP00000004631/1-1089 DYSKIMNGNL SAEIERFSAM FQEKKQEVQT AILRVDQLSQ QLEDLKKGKL bmy_05901T0/1-1210 DYSKIMNGNL SAEIERFSAM FQEKKQEVQT AILRVDQLSQ QLEDLKKGKL BACU006308/1-1566 DYSKIMNGNL SAEIERFSAM FQEKKQEVQT AILRVDQLSQ QLEDLKKGKL ENSTTRP00000006057/1-1075 DYSKIMNGNL SAEIERFSAM FQEKKQEVQT AILRVDQLSQ QLEDLKKGKL 251 300 ENSP00000202556/1-1090 NGFQSYNGKL TGPAAVELKR LYQELQIRNQ LNQEQNSKLQ QQKELLNKRN ENSBTAP00000004631/1-1089 NGFQPYSGKL TGPAAVELKR LYQELQIRNQ LNQEQNSKLQ QQKELLNKRN bmy_05901T0/1-1210 NGFQSYNGKL TGPAAVELKR LYQELQIRNQ LNQEQNSKLQ QQKELLNKRN BACU006308/1-1566 NGFQSYNGKL TGPAAVELKR LYQELQIRNQ LNQEQNSKLQ QQKELLNKRN ENSTTRP00000006057/1-1075 NGFQSYNGKL TGPAAVELKR LYQELQIRNQ LNQEQNSKLQ QQKELLNKRN 301 350 ENSP00000202556/1-1090 MEVAMMDKRI SELRERLYGK KIQ------- -LNRVNGTSS PQSPLSTSGR ENSBTAP00000004631/1-1089 VEVAMMDKRI SELRERLYGK KTQACAKENI SLSRVNGTSS PQSPLSAPGR bmy_05901T0/1-1210 MEVAMMDKRI NDLRERLYGK KIQACEKENI SLSRVNGTSS PQSPLSTPGR BACU006308/1-1566 MEVAMMDKRI SELRERLYGK KIQACEKENI SLSRVNGTCS PQSPLSTPGR ENSTTRP00000006057/1-1075 MEVAVMDKRI NELRERLYGK KIQ------- -LSRVNGTSS PQSPLSTPGR 351 400 ENSP00000202556/1-1090 VAAVGPYIQV PSAGSFPVLG DPIKPQSLSI ASNAAHGRSK S--------- ENSBTAP00000004631/1-1089 VAAVGPYIQV PSTGSCPAPG DPAKPQSLTV ASSAAHGRSK S--------- bmy_05901T0/1-1210 VAAVGPYIQV PSTGSYPAPG DPIKPQSLTI ASSAAHGRSK SDGHGEPRVT BACU006308/1-1566 VAAVGPYIQV PSTGSCPAPG DPIKPQSLTI ASSAAHGRSK SDGHGKPRVT ENSTTRP00000006057/1-1075 VAAVGPYIQV PSTGSYPAPG DPIKPQSLTI ASSAAHGRSK S--------- 401 450 ENSP00000202556/1-1090 ---------- ---------- ------ANDG NWPTLKQNSS SSVKPVQVAG ENSBTAP00000004631/1-1089 ---------- ---------- ------ANDG NWPTLKQNSS SSVRPPQMAG bmy_05901T0/1-1210 GSWAVSDLDV GPDCGSSQRP TSPFANPNDG NWPTLKHNSS SLVKATQIAS BACU006308/1-1566 SSWTVSDLDV GPDCGSSQRP TSPFANPNDG NWPTLKHNSS SLVKVTQIAS ENSTTRP00000006057/1-1075 ---------- ---------- ------ANDG NWPTLKQNSS SLVKPTQIAS 451 500 ENSP00000202556/1-1090 ADWKDPSVEG SVKQGTVSSQ PVPFSALGPT EKPGIEIGKV PPPIPGVGKQ ENSBTAP00000004631/1-1089 VDWKDASAEG PLKQGAVSSQ PVSLSALSAP EKLGMEIGKV PPPLPGVSKP bmy_05901T0/1-1210 VEWKDSNVEG PLRQGPVSSQ PVPVLALGAP EKQGIEIGKV PPPIPGVGKQ BACU006308/1-1566 MEWKDSNVEG PLRQGPVSSQ PVPVPALGAP EKQGIEIGKV PPPIPGVGKQ ENSTTRP00000006057/1-1075 VDWKDPNVEG PLKQGAVSSQ PTPLSALGAP EKLGIEIGKV PPPIPGVGKQ 501 550 ENSP00000202556/1-1090 LPPSYGTYPS PTPLGPGSTS SLERRKEGSL PRPSAGLPSR QRPTLLPATG ENSBTAP00000004631/1-1089 LPPSYGTYPS PAPVGPGSTN SLERRKEGSL PRPSAGLPSR QKPAPLPPAG bmy_05901T0/1-1210 LPPSYGTYPS PAPVGPGSTN SLERRKEGSL PRTSAGLPSR QKPAPLPPAG BACU006308/1-1566 LPPSYGTYPS PAPVGPGSTN SLERRKEGSL PRPSAGLPSR QKPAPLPPAG ENSTTRP00000006057/1-1075 LPPSYGTYPS PAPAGPGSTN SLERRKEGSL PRPSAGLPSR QKPAPLPPAA 551 600 ENSP00000202556/1-1090 STPQPGSSQQ IQQRISVPPS PTYPPAGPPA FPAGDSKPEL PLTVAIRPFL ENSBTAP00000004631/1-1089 GPHQPGSSQQ IQQRISVPPS PTYPPAGLPA FPAGDGKPEL PLTVAIRPFL bmy_05901T0/1-1210 GPHQPGSSQQ IQQRISVPPS PTYPPAGLPA FPAGDGKPEL PLTVAIRPFL BACU006308/1-1566 GPHQPGSSQQ IQQRISVPPS PTYPPAGLPA FPTGDGKPEL PLTVAIRPFL ENSTTRP00000006057/1-1075 GPHQPGSSQQ IQQRISVPPS PTYPPAGLPA FPAGDGKPEL PLTVAIRPFL 601 650 ENSP00000202556/1-1090 ADKGSRPQSP RKGPQTVNSS SIYSMYLQQA TPPKNYQPAA HSALNKSVKA ENSBTAP00000004631/1-1089 ADKGSRPQSP RKGPQTVNSS SIYSMYLQQA TPPKNYQPAA HSTVNKSVKA bmy_05901T0/1-1210 ADKGSRPQSP RKGPQTVNSS SIYSMYLQQA APPKKYQPAA HSTLNKSVKA BACU006308/1-1566 ADKGSRPQSP RKGPQTVNSS SIYSMYLQQA TPPKKYQPAA HSTLNKSVKA ENSTTRP00000006057/1-1075 ADKGSRPQSP RKGPQTVNSS SIYSMYLQQA TPPKKYQPAA HSTLNKSVKA 651 700 ENSP00000202556/1-1090 VYGKPVLPSG STSPSPLPFL HGSLSTGTPQ PQPPSESTEK EPEQDGPAAP ENSBTAP00000004631/1-1089 VYGKPVLPSG STSPSPLPFL HGSLAPGATQ PPPPGESAEK EPEPESPAPP bmy_05901T0/1-1210 VYGKPVLPSG STSPSPLPFL HGSLATSASQ PLPPSEXAEK EPEQDSPAPA BACU006308/1-1566 VYGKPVLPSG STSPSPLPFL HGSLATSASQ PLPPSESAEK EPEQDSPAPA ENSTTRP00000006057/1-1075 VYGKPVLPSG STSPSPLPFL HGSLATSASH PLPPSESAEK EPEQDSPAAP 701 750 ENSP00000202556/1-1090 ADGSTVESLP RPLSPTKLTP IVHSPLRYQS DADLEALRRK LANAPRPLKK ENSBTAP00000004631/1-1089 GDGA-VESLP RPLSPTKLTP IVHSPLRYQS DADLEALRRK LANAPRPLKK bmy_05901T0/1-1210 GDGAAVESLP RPLSPTKLTP IVHSPLRYQS DADLEALRRK LANAPRPLKK BACU006308/1-1566 GDGAAVESLP RPLSPTKLTP IVHSPLRYQS DADLEALRRK LANAPRPLKK ENSTTRP00000006057/1-1075 GDGAAVESLP RPLSPTKLTP IVHSPLRYQS DADLEALRRK LANAPRPLKK 751 800 ENSP00000202556/1-1090 RSSITEPEGP GGPNIQKLLY QRFNTLAGGM EGTPFYQPSP SQDFMGTLAD ENSBTAP00000004631/1-1089 RSSITEPEGP GGPNIQKLLY QRFNTLAGGM EGAPFYQPSP SQDFLGSLAD bmy_05901T0/1-1210 RSSITEPEGP GGPNIQKLLY QRFNTLAGGM EGTPFYQPSP SQDFLGSLAD BACU006308/1-1566 RSSITEPEGP GGPNIQKLLY QRFNTLAGGM EGTPFYQPSP SQDFLGSLAD ENSTTRP00000006057/1-1075 RGSITEPEGP GGPNIQKLLY QRFNTLAGGM EGTPFYQPSP SRDFLGSLAD 801 850 ENSP00000202556/1-1090 VDNGNTNANG NLEELPPAQP TAPLPAEPAP SSDANDNELP SPEPEELICP ENSBTAP00000004631/1-1089 VDNGNTTANG NLGEAGPTPL PAPLPAEPAP ASDANDNRLP SPEPEGLLCP bmy_05901T0/1-1210 VDNGNTAANG NLGEAGPALP TAPLPAELAP ASDANDNRLP SPEPEGLICP BACU006308/1-1566 VDNGNTAANG NLGKAGPALP TAPLPAEPAP ASDANDNRLP SPEPEGLICP ENSTTRP00000006057/1-1075 VDNGNTAANG NLGEAGPTLP TAPLPAEPAP TSDANDNRLP SPEPEGPICP 851 900 ENSP00000202556/1-1090 QTTHQTAEPA EDNNNNVATV PTTEQIPSPV AEAPSPGEEQ VPPAPLPPAS ENSBTAP00000004631/1-1089 PNTHQTAEPA EDDNNNVATA PSTEQAPSPG AEAPSPGEEQ APPALPLSVA bmy_05901T0/1-1210 PNTRQTAEPA EDDNNNVATA LPAEPVPSPP GEEPLPA--L LPPAVPLPAA BACU006308/1-1566 PNTHQTAEPA EDDNNNGPPP PPAEPVPPSL GEERLPG--S LPPAAPLPAA ENSTTRP00000006057/1-1075 LNTHQTAEPA EDDNNNVAAA PPTEP----- ---PLPP--S LPPAAPPPAA 901 950 ENSP00000202556/1-1090 HPPATS---- ---------- ---------- ---------- ---------- ENSBTAP00000004631/1-1089 ST-------- ---------- ---------- ---------- ---------- bmy_05901T0/1-1210 PTRGSSRARG AVASHRRASL GARGVPEEGQ PYGDQKGRQQ GKGEPSRQSP BACU006308/1-1566 PT-------- ---------- ---------- ---------- ---------- ENSTTRP00000006057/1-1075 PT-------- ---------- ---------- ---------- ---------- 951 1000 ENSP00000202556/1-1090 ---------- TNKRTNLKKP NSERTGHGLR VRFNPLALLL DASLEGEFDL ENSBTAP00000004631/1-1089 ---------- -SKRTNLKKP NSERTGHGLR VRFNPLALLL DASLEGEFDL bmy_05901T0/1-1210 GGRAVLQEQR QSKRTNLKKP NSERTGHGLR VRFNPLALLL DASLEGEFDL BACU006308/1-1566 ---------- -SKRTNLKKP NSERTGHGLR VRFNPLALLL DASLEGEFDL ENSTTRP00000006057/1-1075 ---------- -SKRTNLKKP NSERTGHGLR VRFNPLALLL DASLEGEFDL 1001 1050 ENSP00000202556/1-1090 VQRIIYEVED PSKPNDEGIT PLHNAVCAGH HHIVKFLLDF GVNVNAADSD ENSBTAP00000004631/1-1089 VQRVIYEVED PSKPNDEGIT PLHNAVCAGH HHIVRFLLDF GVNVNAADSD bmy_05901T0/1-1210 VQRIIYEVED PSKPNDEGIT PLHNAVCAGH HQIVKFLLDF GVNVNAADSD BACU006308/1-1566 VQRIIYEVED PSKPNDEGIT PLHNAVCAGH HQIVKFLLDF GVNVNAADSD ENSTTRP00000006057/1-1075 VQRIIYEVED PSKPNDEGIT PLHNAVCAGH HQIVKFLLDF GVNVNAADSD 1051 1100 ENSP00000202556/1-1090 GWTPLHCAAS CNSVHLCKQL VESGAAIFAS TISDIETAAD KCEEMEEGYI ENSBTAP00000004631/1-1089 GWTPLHCAAS CNSVHLCKQL VESGAAIFAS TISDIETAAD KCEEMEEGYI bmy_05901T0/1-1210 GWTPLHCAAS CNSVHLCKQL VESGAAIFAS TISDVETAAD KCEEAEEGYS BACU006308/1-1566 GWTPLHCAAS CNSVHLCKQL VESGAAIFAS TISDVETAAD KCEEAEEGYS ENSTTRP00000006057/1-1075 GWTPLHCAAS CNSVHLCKQL VESGAAIFAS TISDVETAAD KCEEAEEGYP 1101 1150 ENSP00000202556/1-1090 QCSQFLYGVQ EKLGVMNKGV AYALWDYEAQ NSDELSFHEG DALTILRRKD ENSBTAP00000004631/1-1089 QCSQFLYGVQ EKLGVMNKGV VYALWAYEAQ NSDELTFREG DALTILRRKD bmy_05901T0/1-1210 QCSQFLHGVQ EKLGVMNKGV VYALWAYEAQ NSDELSFHEG DALTVLRRKD BACU006308/1-1566 QCSQFLHGVQ EKLGVMNKGV VYALWAYEAQ NSDELSFHEG DALSVLRRKD ENSTTRP00000006057/1-1075 QCSQFLHGVQ EKLGVMNKGV VYALWAYEAQ NSDELSFHEG DALTILRRKD 1151 1200 ENSP00000202556/1-1090 ESETEWWWAR LGDREGYVPK NLLG------ ---------- ---------- ENSBTAP00000004631/1-1089 EVETDWWWAR LGDREGYVPR NLLG------ ---------- ---------- bmy_05901T0/1-1210 ESETDWWWAR LGDREGYVPK TLLGSCG--- ---------- ---------- BACU006308/1-1566 ESETDWWWAR LGDREGYVPK TLLGSLDTVG LPGTFRGLAD SVSVECPERK ENSTTRP00000006057/1-1075 ESETDWWWAR FGDREGYVPK TLLG------ ---------- ---------- 1201 1250 ENSP00000202556/1-1090 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000004631/1-1089 ---------- ---------- ---------- ---------- ---------- bmy_05901T0/1-1210 ---------- ---------- ----LETAFL QASWEPWG-- ---------G BACU006308/1-1566 RKGVSWELGS SPYEGDKPNF GLKELVCGLL RAAWPLDGVP VQEPRTRARS ENSTTRP00000006057/1-1075 ---------- ---------- ---------- ---------- ---------- 1251 1300 ENSP00000202556/1-1090 ---------- ---------- ---------- ---------- -LYPRI---- ENSBTAP00000004631/1-1089 ---------- ---------- ---------- ---------- -LYPRI---- bmy_05901T0/1-1210 ICSRR--GPW GGRSPPTGCS QRALLVGCTH G--------- -SNPDS---- BACU006308/1-1566 LCCTRLPGCS RGRQARQNSC PWAFVHLCGH PIEKMDLDEL DLNPRIIAAV ENSTTRP00000006057/1-1075 ---------- ---------- ---------- ---------- -LYPRI---- 1301 1350 ENSP00000202556/1-1090 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000004631/1-1089 ---------- ---------- ---------- ---------- ---------- bmy_05901T0/1-1210 ---------- ---------- ---------- ---------- ---------- BACU006308/1-1566 KKAKLRSVKE VLHLSGPDLQ RLTRLSLPDV QRLLRAASSH LRGSSVCTAL ENSTTRP00000006057/1-1075 ---------- ---------- ---------- ---------- ---------- 1351 1400 ENSP00000202556/1-1090 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000004631/1-1089 ---------- ---------- ---------- ---------- ---------- bmy_05901T0/1-1210 ---------- EHWPELPFGA P--HGLSSDE EPLKRCFCHF PGKLKLDMAL BACU006308/1-1566 QLLRQKEQFP EQHQRLSLGC PVLDGLLRGG LPLD-GITEL AGRSSAGKTQ ENSTTRP00000006057/1-1075 ---------- ---------- ---------- ---------- ---------- 1401 1450 ENSP00000202556/1-1090 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000004631/1-1089 ---------- ---------- ---------- ---------- ---------- bmy_05901T0/1-1210 LVLPLADSVH NVKPRQVLGE ALSPVCPQ-- ---------- ---------- BACU006308/1-1566 LALQLCLAVQ LPRRHGGLGA GAVFVCTEDA FPSRRLQQLI AQQQRLRTDV ENSTTRP00000006057/1-1075 ---------- ---------- ---------- ---------- ---------- 1451 1500 ENSP00000202556/1-1090 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000004631/1-1089 ---------- ---------- ---------- ---------- ---------- bmy_05901T0/1-1210 ---------- ---------- ---------- ---------- ---------- BACU006308/1-1566 PGDVVRKIQF GHQIFIEHAA DVDTLLECVH EKVPVLLSRG MARLVVIDSV ENSTTRP00000006057/1-1075 ---------- ---------- ---------- ---------- ---------- 1501 1550 ENSP00000202556/1-1090 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000004631/1-1089 ---------- ---------- ---------- ---------- ---------- bmy_05901T0/1-1210 ---------- ---------- ---------- ---------- ---------- BACU006308/1-1566 AAPFRCEFDQ AASALRARRL QALGAELRRL SCTFRSPVLC VNQVTEFAEE ENSTTRP00000006057/1-1075 ---------- ---------- ---------- ---------- ---------- 1551 1600 ENSP00000202556/1-1090 ---------- ---------- ---------- ---------- ---KPRQRTL ENSBTAP00000004631/1-1089 ---------- ---------- ---------- ---------- ---KPRQRTL bmy_05901T0/1-1210 ---------- ---------- ---------- -------LGE RPSPPRRPTF BACU006308/1-1566 RGAAAGPPGV GGERVSPALG ITWSNQLLVR LMADRQRPEE AASAPPRRTL ENSTTRP00000006057/1-1075 ---------- ---------- ---------- ---------- ---KPRQRTL 1601 1650 ENSP00000202556/1-1090 A--------- ---------- ---------- - ENSBTAP00000004631/1-1089 A--------- ---------- ---------- - bmy_05901T0/1-1210 ASYCKSE--- ---------- ---------- - BACU006308/1-1566 RVVSAPHLPP SSCSYTVTAE GVRGTPGTES C ENSTTRP00000006057/1-1075 A--------- ---------- ---------- -